Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq335 114 1e-19 seq506 100 2e-15 seq451 95.1 9e-14 >seq335 Length=1493947 Score = 114 bits (126), Expect = 1e-19 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 282670 ACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTT 282729 |||||| | || || ||||| || || || ||||| || || | ||| | || | || Sbjct 63514 ACCAATCAGACGCTTGGCATCGAAGATCGTGTTGGTCGGGTTCATGGCAACCTGGTTCTT 63573 Query 282730 GGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCG 282789 ||| ||||| ||||||||| | || || || || || | ||||| ||||| || || || Sbjct 63574 GGCAGCATCGCCAATCAGACGCTCCGTGTCAGTGAAGGCCACATACGATGGCGTGGTTCG 63633 Query 282790 ATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACT 282849 ||||| || ||||| || || ||||| |||||||| | || | || || ||||| || Sbjct 63634 GTTACCCTGGTCATTGGCGATGATTTCTACTTTACCGTGCTGGAAAACTCCGACACAGCT 63693 Query 282850 AAAAGTTGTTCCTAAATCAATACCAA 282875 | || || || | ||||||||||| Sbjct 63694 GTAGGTCGTGCCCAGATCAATACCAA 63719 >seq506 Length=1292245 Score = 100 bits (110), Expect = 2e-15 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 637135 TCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACATTTAAGATCAACTATTATTGGT 637194 || || || ||| | || |||||||||||| |||| |||||| | || || || |||||| Sbjct 1076242 TCGTCGCCCAATGTGGCGAAAGAAATGCATGTTGGCCATTTACGTTCGACCATAATTGGT 1076301 Query 637195 GAATCTATTTGTAGGGTATTAGAAATGTGTGGACACGATGTTTATCGTATTAATCATGTG 637254 || || |||||| | | | ||| | ||| || ||||| | || || || || | Sbjct 1076302 GATTCGATTTGTCGTTTCCTGGAATTTGTTGGCCATGATGTATTGCGCATAAACCACATC 1076361 Query 637255 GGTGATTGGGGAACTCAATTCGGTATGTTAATTGC 637289 ||||| |||||||| || ||||| ||||||||||| Sbjct 1076362 GGTGACTGGGGAACGCAGTTCGGCATGTTAATTGC 1076396 >seq451 Length=710502 Score = 95.1 bits (104), Expect = 9e-14 Identities = 297/458 (65%), Gaps = 4/458 (1%) Strand=Plus/Minus Query 282018 AATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTG 282077 |||| || || ||||||| ||||||| ||||| | | || ||||| | || |||| Sbjct 407741 AATCGATACCCTCGAACAGGGAATCAATCTCAATGCTTGCCTGGGTCGATGCGGACAGTG 407682 Query 282078 CACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCA 282137 ||| || || || || || || || | | | || || || ||| ||| | Sbjct 407681 TACGCTTTGCTCGCTCGCAAGCCGTACGCAACCGGCGCAACGCAC--GCTTGTTGCTCGT 407624 Query 282138 AATCTGTTTTATAT--TTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATC 282195 ||| | || | | || | ||| || ||||| ||| | | || | ||||| || Sbjct 407623 AATGTCCTTCTTGTGCTTGCGCTTAAACTCTTCGACAAAGTGGGACACCATGCGATTGTC 407564 Query 282196 AAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATC 282255 ||| || || || |||| | ||||| || | ||| | | |||| |||| ||||| Sbjct 407563 AAAGTCCTCCCCACCCAGGTGAGTATCGCCAGCCGTTGACTTAACTTCAAAAATGCCATC 407504 Query 282256 TTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATT 282315 |||| | | | | ||||| || |||||||| | ||| || || |||||||| Sbjct 407503 CTCAATGGTAAGGATCGATACATCGAACGTACCACCACCAAGATCGAAGATCAGTACATT 407444 Query 282316 CATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATT 282375 || | || || || || || ||||||| || || || || ||||| || Sbjct 407443 ACGCTCGCCGGAACCCTTCTTGTCCAGCCCGTACGCAATGGCCGCTGCCGTCGGTTCGTT 407384 Query 282376 AATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTG 282435 ||| || | || ||||| | ||| || || || |||||||||||||| || | ||| Sbjct 407383 AATGATGCGCAGCACATTCAAACCGGCGATCGCACCAGCATCTTTAGTGGCCTGACGTTG 407324 Query 282436 TGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 282473 |||||||| || || || || || || || || |||| Sbjct 407323 CGAATCGTTGAAGTACGCTGGGACCGTGATGACTGCAT 407286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740562058682592