Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28]
1,392 sequences; 225,223,604 total letters
Query= NC_023681.1
Length=152710
Score E
Sequences producing significant alignments: (Bits) Value
seq672 100 3e-16
seq628 95.1 1e-14
>seq672
Length=1102954
Score = 100 bits (110), Expect = 3e-16
Identities = 151/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 137197 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 137256
|||| || | ||||| |||||||| || || |||||||| || || ||||
Sbjct 391589 CGCAGCACCAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCCGACAGAGTGCGGCCA 391648
Query 137257 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 137316
|| || || || ||||| || |||| ||||| |||||||| || || || ||||| ||
Sbjct 391649 TCCTCCAGCTGCTTACCGGCGAAGATGAGACGCTGCTGATCTGGGGGAATTCCTTCCTTA 391708
Query 137317 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACC 137376
|| ||| ||| || | | ||| | |||||| | || || || |||| || |
Sbjct 391709 TCCTGAATCTTTGCCTTCACATTTTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTGATG 391768
Query 137377 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411
||||||||||| | |||||| ||||| || |||||
Sbjct 391769 GTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCAT 391803
>seq628
Length=1452984
Score = 95.1 bits (104), Expect = 1e-14
Identities = 158/223 (71%), Gaps = 4/223 (2%)
Strand=Plus/Minus
Query 50217 CCGTGTGTGCGTAAAAAGGACGATTGGGCATTGAAATGGACTaaaaacaaaaaa-CTTAC 50275
||||| ||| || |||| |||||||||| |||| |||| || ||| || | ||
Sbjct 708406 CCGTGCGTGAAGAAGAAGGCCGATTGGGCACTGAACTGGATCTCAAGCAAGAAGGCAAAC 708347
Query 50276 TTTGGCCGAACGTTTAGTGGCGTTTGCCATAGTTGAAGGTGTGtttttttCCGGTAGCTT 50335
|||||| || ||| | || |||||||| || |||||| | || || |||||||||
Sbjct 708346 TTTGGC-GAGCGTGTCGTCGCGTTTGCTGCTGTCGAAGGTATCTTCTTCAGCGGTAGCTT 708288
Query 50336 TGCAGCCATATTTTACATTAA-AACCTTAGGCATAATGCCCGGCCTCACGTTTAGCAACG 50394
||| ||||| || | | || || | | || | ||||| || || || || ||||
Sbjct 708287 TGCCGCCATTTTCTGGCTGAAGAAGCGT-GGACTGATGCCGGGACTTACCTTCTCGAACG 708229
Query 50395 AGTTGATTTCGCGCGACGAAGGAATGCACACAGACTTTGCGTG 50437
|| |||||||||| || |||||| | ||| |||||||| ||
Sbjct 708228 AGCTGATTTCGCGTGATGAAGGACTACACTGTGACTTTGCCTG 708186
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 488535499334400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |