Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq672 100 3e-16 seq628 95.1 1e-14 >seq672 Length=1102954 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 137197 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 137256 |||| || | ||||| |||||||| || || |||||||| || || |||| Sbjct 391589 CGCAGCACCAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCCGACAGAGTGCGGCCA 391648 Query 137257 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 137316 || || || || ||||| || |||| ||||| |||||||| || || || ||||| || Sbjct 391649 TCCTCCAGCTGCTTACCGGCGAAGATGAGACGCTGCTGATCTGGGGGAATTCCTTCCTTA 391708 Query 137317 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACC 137376 || ||| ||| || | | ||| | |||||| | || || || |||| || | Sbjct 391709 TCCTGAATCTTTGCCTTCACATTTTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTGATG 391768 Query 137377 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||||||||||| | |||||| ||||| || ||||| Sbjct 391769 GTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCAT 391803 >seq628 Length=1452984 Score = 95.1 bits (104), Expect = 1e-14 Identities = 158/223 (71%), Gaps = 4/223 (2%) Strand=Plus/Minus Query 50217 CCGTGTGTGCGTAAAAAGGACGATTGGGCATTGAAATGGACTaaaaacaaaaaa-CTTAC 50275 ||||| ||| || |||| |||||||||| |||| |||| || ||| || | || Sbjct 708406 CCGTGCGTGAAGAAGAAGGCCGATTGGGCACTGAACTGGATCTCAAGCAAGAAGGCAAAC 708347 Query 50276 TTTGGCCGAACGTTTAGTGGCGTTTGCCATAGTTGAAGGTGTGtttttttCCGGTAGCTT 50335 |||||| || ||| | || |||||||| || |||||| | || || ||||||||| Sbjct 708346 TTTGGC-GAGCGTGTCGTCGCGTTTGCTGCTGTCGAAGGTATCTTCTTCAGCGGTAGCTT 708288 Query 50336 TGCAGCCATATTTTACATTAA-AACCTTAGGCATAATGCCCGGCCTCACGTTTAGCAACG 50394 ||| ||||| || | | || || | | || | ||||| || || || || |||| Sbjct 708287 TGCCGCCATTTTCTGGCTGAAGAAGCGT-GGACTGATGCCGGGACTTACCTTCTCGAACG 708229 Query 50395 AGTTGATTTCGCGCGACGAAGGAATGCACACAGACTTTGCGTG 50437 || |||||||||| || |||||| | ||| |||||||| || Sbjct 708228 AGCTGATTTCGCGTGATGAAGGACTACACTGTGACTTTGCCTG 708186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488535499334400