Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq949 141 2e-28 seq672 140 6e-28 seq628 129 1e-24 >seq949 Length=1771395 Score = 141 bits (156), Expect = 2e-28 Identities = 165/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || | || ||||| ||||| ||||| ||||| || || || || | | || Sbjct 446681 ACGAAGGACCAGATGGAGAGTCGATTCCTTCTGAATATTGTAGTCCGACAGCGTACGGCC 446740 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| | || || ||||||||||| || | || |||||||| || ||||| ||||| Sbjct 446741 ATCTTCCAACTGCTTGCCAGCAAAGATCAGACGCTGCTGATCTGGTGGGATTCCCTCCTT 446800 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||| |||||||| || || ||||| || || ||||| || || || |||| || || Sbjct 446801 ATCCTGAATCTTGGCCTTAACATTCTCGATGGTATCGGATGGCTCAACCTCCAGGGTGAT 446860 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTATA 82817 |||||| || || | ||||| || || ||||||||| ||||| Sbjct 446861 CGTCTTTCCAGTTAGAGTCTTGACGAAGATCTGCATTTTTATA 446903 >seq672 Length=1102954 Score = 140 bits (154), Expect = 6e-28 Identities = 173/237 (73%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 82578 CACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAA 82637 ||| |||| || | | ||||| || | || || |||||||| ||||| || || || Sbjct 391571 CACTTACCACCACGAAGTCGCAGCACCAGATGAAGGGTAGATTCCTTCTGAATGTTGTAG 391630 Query 82638 TCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCT 82697 || || ||| | | || || || || || || || || ||||| || | || |||||| Sbjct 391631 TCCGACAGAGTGCGGCCATCCTCCAGCTGCTTACCGGCGAAGATGAGACGCTGCTGATCT 391690 Query 82698 GGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT 82757 || || |||||||||||||| ||||||||||| || |||||||| ||||| || ||| Sbjct 391691 GGGGGAATTCCTTCCTTATCCTGAATCTTTGCCTTCACATTTTCGATCGTGTCCGAAGGC 391750 Query 82758 TCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814 || || || | || || |||||||| || | || || || || |||||||| ||| Sbjct 391751 TCGACCTCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCATGATT 391807 >seq628 Length=1452984 Score = 129 bits (142), Expect = 1e-24 Identities = 223/314 (71%), Gaps = 10/314 (3%) Strand=Plus/Plus Query 198312 CTCGAAAAGGCGGAAACACATGACCCTCTATGGAATGCATCGCAAATACAGATGATAAGA 198371 || |||| ||| |||| || ||| ||| ||||| | | || | |||||| ||| Sbjct 270509 CTGGAAACGGCCAAAACGCACGACGATCTTTGGAACTCGGCCCAGCTGCAGATGGTAAAG 270568 Query 198372 GAAGGAAAAATGCATAGTTTTTTAAGAATGTACTGGGCTAAAAAGATACTTGAATGGACA 198431 || || |||||||| | ||| |||| ||||||||||| ||||||||||| || |||||| Sbjct 270569 GAGGGTAAAATGCACGGCTTTCTAAGGATGTACTGGGCCAAAAAGATACTCGAGTGGACA 270628 Query 198432 AGAACACCGGAAGACGC-TTTGAGTTATAG-TATCTATCTAAACAATAAGTACGAACTAG 198489 | ||| || || || || |||| | | |||||||| ||| || |||| || | Sbjct 270629 AAAACGCCCGAGGAAGCGCTTGA--AACGGCCATCTATCTGAACGATCGGTACAGTCTGG 270686 Query 198490 ACGGCACG-GATCCTAACGGATACGTAGGTTGTATGTGGTCTATTTGCGG--ATTACATG 198546 | || ||| ||||| ||||| ||||| ||||| |||||||| | |||||| ||| || | Sbjct 270687 ATGG-ACGCGATCCGAACGGTTACGTCGGTTGCATGTGGTCGA-TTGCGGGCATT-CACG 270743 Query 198547 ATCGAGCGTGGAAAGAAAGACCTATATTTGGGAAGATAAGATATATGAATTATGAGGGTT 198606 ||| | ||||| || | || || || || || || || ||||| ||||| || | Sbjct 270744 ATCAGGGATGGAAGGAGCGTGAAATTTTCGGCAAAATTAGGTACATGAACTATGAAGGAT 270803 Query 198607 CTAAGAAAAAATTT 198620 ||| |||||| Sbjct 270804 GCAAGCGTAAATTT 270817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981809689111888