Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28]
1,392 sequences; 225,223,604 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq949 141 2e-28
seq672 140 6e-28
seq628 129 1e-24
>seq949
Length=1771395
Score = 141 bits (156), Expect = 2e-28
Identities = 165/223 (74%), Gaps = 0/223 (0%)
Strand=Plus/Plus
Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654
||| || || | || ||||| ||||| ||||| ||||| || || || || | | ||
Sbjct 446681 ACGAAGGACCAGATGGAGAGTCGATTCCTTCTGAATATTGTAGTCCGACAGCGTACGGCC 446740
Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714
||||| | || || ||||||||||| || | || |||||||| || ||||| |||||
Sbjct 446741 ATCTTCCAACTGCTTGCCAGCAAAGATCAGACGCTGCTGATCTGGTGGGATTCCCTCCTT 446800
Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774
||| |||||||| || || ||||| || || ||||| || || || |||| || ||
Sbjct 446801 ATCCTGAATCTTGGCCTTAACATTCTCGATGGTATCGGATGGCTCAACCTCCAGGGTGAT 446860
Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTATA 82817
|||||| || || | ||||| || || ||||||||| |||||
Sbjct 446861 CGTCTTTCCAGTTAGAGTCTTGACGAAGATCTGCATTTTTATA 446903
>seq672
Length=1102954
Score = 140 bits (154), Expect = 6e-28
Identities = 173/237 (73%), Gaps = 0/237 (0%)
Strand=Plus/Plus
Query 82578 CACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAA 82637
||| |||| || | | ||||| || | || || |||||||| ||||| || || ||
Sbjct 391571 CACTTACCACCACGAAGTCGCAGCACCAGATGAAGGGTAGATTCCTTCTGAATGTTGTAG 391630
Query 82638 TCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCT 82697
|| || ||| | | || || || || || || || || ||||| || | || ||||||
Sbjct 391631 TCCGACAGAGTGCGGCCATCCTCCAGCTGCTTACCGGCGAAGATGAGACGCTGCTGATCT 391690
Query 82698 GGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT 82757
|| || |||||||||||||| ||||||||||| || |||||||| ||||| || |||
Sbjct 391691 GGGGGAATTCCTTCCTTATCCTGAATCTTTGCCTTCACATTTTCGATCGTGTCCGAAGGC 391750
Query 82758 TCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814
|| || || | || || |||||||| || | || || || || |||||||| |||
Sbjct 391751 TCGACCTCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCATGATT 391807
>seq628
Length=1452984
Score = 129 bits (142), Expect = 1e-24
Identities = 223/314 (71%), Gaps = 10/314 (3%)
Strand=Plus/Plus
Query 198312 CTCGAAAAGGCGGAAACACATGACCCTCTATGGAATGCATCGCAAATACAGATGATAAGA 198371
|| |||| ||| |||| || ||| ||| ||||| | | || | |||||| |||
Sbjct 270509 CTGGAAACGGCCAAAACGCACGACGATCTTTGGAACTCGGCCCAGCTGCAGATGGTAAAG 270568
Query 198372 GAAGGAAAAATGCATAGTTTTTTAAGAATGTACTGGGCTAAAAAGATACTTGAATGGACA 198431
|| || |||||||| | ||| |||| ||||||||||| ||||||||||| || ||||||
Sbjct 270569 GAGGGTAAAATGCACGGCTTTCTAAGGATGTACTGGGCCAAAAAGATACTCGAGTGGACA 270628
Query 198432 AGAACACCGGAAGACGC-TTTGAGTTATAG-TATCTATCTAAACAATAAGTACGAACTAG 198489
| ||| || || || || |||| | | |||||||| ||| || |||| || |
Sbjct 270629 AAAACGCCCGAGGAAGCGCTTGA--AACGGCCATCTATCTGAACGATCGGTACAGTCTGG 270686
Query 198490 ACGGCACG-GATCCTAACGGATACGTAGGTTGTATGTGGTCTATTTGCGG--ATTACATG 198546
| || ||| ||||| ||||| ||||| ||||| |||||||| | |||||| ||| || |
Sbjct 270687 ATGG-ACGCGATCCGAACGGTTACGTCGGTTGCATGTGGTCGA-TTGCGGGCATT-CACG 270743
Query 198547 ATCGAGCGTGGAAAGAAAGACCTATATTTGGGAAGATAAGATATATGAATTATGAGGGTT 198606
||| | ||||| || | || || || || || || || ||||| ||||| || |
Sbjct 270744 ATCAGGGATGGAAGGAGCGTGAAATTTTCGGCAAAATTAGGTACATGAACTATGAAGGAT 270803
Query 198607 CTAAGAAAAAATTT 198620
||| ||||||
Sbjct 270804 GCAAGCGTAAATTT 270817
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981809689111888
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |