Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq628 118 2e-21 >seq628 Length=1452984 Score = 118 bits (130), Expect = 2e-21 Identities = 209/295 (71%), Gaps = 10/295 (3%) Strand=Plus/Plus Query 182995 CTCGAAAAGGCAGAAACACATGACCCTCTATGGAATGCATCACAAATACAGATGATGAGA 183054 || |||| ||| |||| || ||| ||| ||||| | | || | |||||| | | Sbjct 270509 CTGGAAACGGCCAAAACGCACGACGATCTTTGGAACTCGGCCCAGCTGCAGATGGTAAAG 270568 Query 183055 GAAGGAAAAATGCATAGTTTTTTACGAATGTACTGGGCTAAAAAGATACTTGAATGGACA 183114 || || |||||||| | ||| || | ||||||||||| ||||||||||| || |||||| Sbjct 270569 GAGGGTAAAATGCACGGCTTTCTAAGGATGTACTGGGCCAAAAAGATACTCGAGTGGACA 270628 Query 183115 AGAACTCCGGAAGATGC-TTTGAGTTATAG-TATCTATATGAACAATAAGTACGAACTAG 183172 | ||| || || || || |||| | | |||||| ||||| || |||| || | Sbjct 270629 AAAACGCCCGAGGAAGCGCTTGA--AACGGCCATCTATCTGAACGATCGGTACAGTCTGG 270686 Query 183173 ACGGTACG-GATCCTAACGGATACGTAGGTTGTATGTGGTCTATTTGCGG--ATTACACG 183229 | || ||| ||||| ||||| ||||| ||||| |||||||| | |||||| ||| |||| Sbjct 270687 ATGG-ACGCGATCCGAACGGTTACGTCGGTTGCATGTGGTCGA-TTGCGGGCATT-CACG 270743 Query 183230 ATAGAGCGTGGAAAGAAAGACCTATATTTGGAAAGATAAGATATATGAATTATGA 183284 || | ||||| || | || || || || || || || ||||| ||||| Sbjct 270744 ATCAGGGATGGAAGGAGCGTGAAATTTTCGGCAAAATTAGGTACATGAACTATGA 270798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903395480645120