Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28]
1,392 sequences; 225,223,604 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq872 365 4e-96
seq672 116 4e-21
seq628 116 4e-21
>seq872
Length=887634
Score = 365 bits (404), Expect = 4e-96
Identities = 1198/1838 (65%), Gaps = 48/1838 (3%)
Strand=Plus/Plus
Query 147942 GCGGGTTGAGTGCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAGTCG 148001
|| |||| |||||||| ||||||||||||||||| || ||||| ||| ||||||
Sbjct 220970 GCCGGTTTGGTGCGCAGGTAGTACATGCCCGTCTTTAGTCCCATCTTCCACGCGTAGAAA 221029
Query 148002 TGCACCGACGACATGAGCGTG---TACGTCGGGTGCGGCACAAACAGATTAAACGACTGG 148058
|| | ||||| || || || || |||| | | ||| | ||||| || ||
Sbjct 221030 TGGATCGACGTCA---GCTTGCCATAGTTCGGCTCGGCCACGTGTATGTTAAATGATTGT 221086
Query 148059 CTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTATCTTCATC 148118
||| || || ||||| || || || || ||||||| ||| | || | | |||
Sbjct 221087 GACTGATCGATAAACGCTCCCCGATCGGCCGCCATTTTGATGGATGTTTTCACCGAGATC 221146
Query 148119 TCCCAGGCCGTCTTGTACAGC-CGCTTGATATGATCGGGAATGCCGTCGATGCGCTGCAC 148177
||||| ||||||||||||| ||| ||| | | || || || ||| || |
Sbjct 221147 TCCCATACCGTCTTGTACAGGTCGCG-GATTTCCTTTGGTATTGATTCAATGTTTTGAAT 221205
Query 148178 CGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCG---TCCGTGTATAGGTTGAGCTC 148234
||| ||| || | || || | || ||| || ||| | | | | |
Sbjct 221206 CGATCCGTTGTTGGACAAGATGTTGTTCTTCATGTCAAGATCCC---ACAAACCCATCGC 221262
Query 148235 GATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCG 148294
| || || | | ||||| || ||||||||||| |||||||| | ||||| || ||
Sbjct 221263 TGTTAGATCTTGCAGCAGATGATGGTTCACCACCTGGAACTCGCCCGATAGCACACGTCG 221322
Query 148295 CAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGT 148354
|| ||||| ||| |||| || || ||||| ||||||||||| || || || ||
Sbjct 221323 GTTGTAAACGTTCGACGTGTACGGCTCGAAGGACTCATTGTTGCCCAATATTTGTGCCGT 221382
Query 148355 CGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTT 148414
|| || || ||||| || | ||| |||||||| || | |||| | ||| || ||
Sbjct 221383 CGAAGCTGTCGGCATCGGTGCCAGCAGTAGCGAGTTACGAATACCGTGCTTTGCAATCTT 221442
Query 148415 GCGCTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTG 148474
||||| | | ||||| ||| || || |||| ||||||||| ||||||||
Sbjct 221443 CTCCTTCAACTCTGTCCAGTTCCACAGATCCGTCGGTTCTTTGTTCCACATTTCGTACTG 221502
Query 148475 CAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGC 148534
|| | || ||| | || | || || |||| ||| || |||| | || ||
Sbjct 221503 TAGGACACCCTTGCTCACTGGACAACCTTCATACGTCTCGTATGGACCGTCCCGTGCAGC 221562
Query 148535 CAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAG 148594
|| ||||||||| || || || || || ||||| || || || ||||| || ||
Sbjct 221563 CAATTCGCAGCTTGCTTCCAGTGCTCCATAGTAGATGGTTTCAAATATTTGTTGATTCAG 221622
Query 148595 CAGCGCCGCCGACTCGCTTTCGTACGGCATA-CGCAGCCGCACAAACGCGTCGGCAAGGC 148653
| ||| ||||||||||| || ||| |||| | ||||| ||||| | ||
Sbjct 221623 CTTTTGGGCCTCTTCGCTTTCGTATGG-ATAGCGCATTAAAATGAACGCATCGGCCATGC 221681
Query 148654 CCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCG-AGC 148712
|||| || || | || ||||||| ||| |||||||| | ||| ||| | | |
Sbjct 221682 CCTGCACACCGATACCGATGGGCCTGTGGCGCATGTTGGAACGCTTCGC-CTCCGGCACC 221740
Query 148713 GGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTT--TGTAATTC 148770
||||||| ||| ||||||||| |||| |||||||| || | ||| | || |
Sbjct 221741 GGATAGTAGTTTATGTCGATGATTTTGTTCAGATTGCGTGTTACTATCTTGGCGACATCC 221800
Query 148771 TGCGCAGCAATTCAAAATCGTACTTGTCATC------TACGATGCATCGGTTCACGGCGA 148824
| |||| | | ||||||||| | ||| ||||| ||| ||||| ||||
Sbjct 221801 T--TCAGCTTTACGAAATCGTACGTCCTATCGGATTTTACGA-ACAT--GTTCAGTGCGA 221855
Query 148825 TAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGC 148884
| ||||| |||||||| || || | |||||| | |||||| || ||||| | ||
Sbjct 221856 TCGAGGCCAGATTGCAAACCGCAATTTCATCCTTCGACGAGTACTCCACAATCTCAGTGC 221915
Query 148885 ACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGT 148944
||| || || || || ||| | ||||| || ||||| |||| |||||| || |
Sbjct 221916 ACAAGTTAGAACACTTAATGGTGCCAATGTTCTGCTGGTTGCTTTTGCGGTTGCATGCAT 221975
Query 148945 CCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTAT---GAACCGAT 149001
||||||||||||| |||||| |||| ||||||||||||| ||| | || |||||
Sbjct 221976 CCTTGTACAGCATATACGGTACGCCCGTTTCCACCTGCGATTCAATGATCGCGAACC--- 222032
Query 149002 GCAGGTCCTGCGCGCGCACTTGCTGCTCGTAGCGACCCTCCTGCTCGTATAAAGTATACA 149061
|| ||||| || ||| || | | |||||||| | |||||| ||| ||||
Sbjct 222033 ACAAATCCTGTGCCTTCACCTGGCGAATAAAACGACCCTCTTTCTCGTAGCCAGTGTACA 222092
Query 149062 GCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGA 149121
| ||||||| || || ||| ||| | |||||| || | ||| |||||||| |
Sbjct 222093 GTGCCTCGAACTTTTCACCCCAGCTATCAGACAAACCGGGACAATCGTGAGGGCACATTA 222152
Query 149122 GCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGT 149181
| ||||| ||| ||| | ||| |||| ||| |||||||| || | ||| | ||||
Sbjct 222153 GACTCCACATTTCGTTCGCCTCCACCCGCTCCATGAACAGATCCGGAATCCACAAGGCGT 222212
Query 149182 ACATGAGGTCGCGCGCCTTGCA-GTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACG 149240
| | | |||||| | | ||| || || ||| |||| ||| | || |
Sbjct 222213 AAAACATGTCGCGTG-CACGCACCTCCTCTTTGCCGGTGTTTTTCTTCAGATCCAGAAAC 222271
Query 149241 CTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGC---TTG 149297
||| | || |||||||||| || | ||| | || | || ||| |||| |||
Sbjct 222272 TCGAACACATCACCGTGCCACGGTTCGAGGTAGATGGCAAAAGCTCCCGGGCGCTTGTTG 222331
Query 149298 CCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCA 149357
|| ||||| || |||| || || | ||||| |||| || | ||| || | | ||
Sbjct 222332 CCACCCTGATCCACGTATCGGGCCGTATTGTTGTACACGCGCAGCATTGGCACCAACCCG 222391
Query 149358 CTGGCAGTGCCGTTAGTAGAGCTA-ATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTT 149416
| | | | || || || | | | ||| | || ||| || | |||||||||
Sbjct 222392 TTTGAAATTCCATTCGT-GCCCGAGATGTACGTACCTTTCGCGCGAATACAGTGCACGTT 222450
Query 149417 GACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGAT 149476
| || || ||||| | | ||||| || || || | ||||| ||||||
Sbjct 222451 CAGCCCAATTCCGCCAGCAGATTTTGAAATCAGTGCACACTGCTTCAGCGTATCGTAGAT 222510
Query 149477 GCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACG 149536
|| || ||||||||| | |||||| |||| || || || ||| |||||| |
Sbjct 222511 ACCTTCAATGCTGTCGTCCGACATGGTGAGCAAGAAACAGGACGACAACTGCGGACGTTG 222570
Query 149537 CGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCATCATCTC 149596
||| | ||||| |||||||| || ||| || ||||| || || | || |
Sbjct 222571 CGTAGCCGCCGCAAACATGGTCGGTGAGGCATGGGTAAAGTAGCGCTCCGAAAGCAGATT 222630
Query 149597 GTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAG 149656
||| | ||||| | || ||||| || ||||| ||||| || || ||||||||||
Sbjct 222631 GTAAGTCTCGATTGCTGCATCGATGTCTTCACCATGAATGCCGATCGCAACGCGCATCAA 222690
Query 149657 CATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAG--CCGTTTTCT 149714
|||||||||||||||||| | | ||| || || | ||||||| ||| |||
Sbjct 222691 CATATGCTGCGGTCGCTCAACGATCTTGCCCTTGATCTTCAACAAGTAGGACCG--CTCT 222748
Query 149715 AGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCG 149752
| || ||| |||| || || ||||| |||| |||||
Sbjct 222749 AAAGTTTTGAAGCCGAAATAGTTGTACCCAAAATCGCG 222786
>seq672
Length=1102954
Score = 116 bits (128), Expect = 4e-21
Identities = 151/206 (73%), Gaps = 2/206 (1%)
Strand=Plus/Plus
Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515
||| | ||| || || ||||| || ||||| || || ||| | | | ||||| ||||
Sbjct 391600 ATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCCGACAGAGTGCGGCCA-TCCTCCAGCT 391658
Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575
|||| || ||| | ||||| |||||||| || || || || |||||||| || ||||
Sbjct 391659 GCTTACCGGCGAAGATGAGACGCTGCTGATCTGGGGGAATTCCTTCCTTATCCTGAATCT 391718
Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635
|| ||| | | || | |||||| | ||||| || || | |||| ||| |||||||
Sbjct 391719 TTGCCTTCACATTTTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTGATGGTCTTGCCGG 391778
Query 133636 TCAGAGTTTTTACGAAAATCTGCATG 133661
| || ||||| |||||||||||||||
Sbjct 391779 TGAGTGTTTTCACGAAAATCTGCATG 391804
>seq628
Length=1452984
Score = 116 bits (128), Expect = 4e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 120639 CAGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGT 120698
|||||| |||||||| ||| || || || || ||||| ||||||||||| || ||
Sbjct 708182 CAGGCAGGCAAAGTCACAGTGTAGTCCTTCATCACGCGAAATCAGCTCGTTCGAGAAGGT 708241
Query 120699 CAGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAA 120758
|| || ||||| | || | |||| | |||| |||||||||||||| || ||
Sbjct 708242 AAGTCCCGGCATCAGTCCACGCTTCTTCAGCCAGAAAATGGCGGCAAAGCTACCGCTGAA 708301
Query 120759 GAACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCT 120818
||| | || || || ||||| ||||| | |||||| | || | ||| |||||||
Sbjct 708302 GAAGATACCTTCGACAGCAGCAAACGCGACGACACGCTCGCCAAAGTTTGCCTTCTTGCT 708361
Query 120819 GTCGATCCACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCA 120865
|||||| |||| ||||| |||||||| || |||||||||||
Sbjct 708362 TGAGATCCAGTTCAGTGCCCAATCGGCCTTCTTCTTCACGCACGGCA 708408
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483412388478080
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