Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq872 365 4e-96 seq672 116 4e-21 seq628 116 4e-21 >seq872 Length=887634 Score = 365 bits (404), Expect = 4e-96 Identities = 1198/1838 (65%), Gaps = 48/1838 (3%) Strand=Plus/Plus Query 147942 GCGGGTTGAGTGCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAGTCG 148001 || |||| |||||||| ||||||||||||||||| || ||||| ||| |||||| Sbjct 220970 GCCGGTTTGGTGCGCAGGTAGTACATGCCCGTCTTTAGTCCCATCTTCCACGCGTAGAAA 221029 Query 148002 TGCACCGACGACATGAGCGTG---TACGTCGGGTGCGGCACAAACAGATTAAACGACTGG 148058 || | ||||| || || || || |||| | | ||| | ||||| || || Sbjct 221030 TGGATCGACGTCA---GCTTGCCATAGTTCGGCTCGGCCACGTGTATGTTAAATGATTGT 221086 Query 148059 CTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTATCTTCATC 148118 ||| || || ||||| || || || || ||||||| ||| | || | | ||| Sbjct 221087 GACTGATCGATAAACGCTCCCCGATCGGCCGCCATTTTGATGGATGTTTTCACCGAGATC 221146 Query 148119 TCCCAGGCCGTCTTGTACAGC-CGCTTGATATGATCGGGAATGCCGTCGATGCGCTGCAC 148177 ||||| ||||||||||||| ||| ||| | | || || || ||| || | Sbjct 221147 TCCCATACCGTCTTGTACAGGTCGCG-GATTTCCTTTGGTATTGATTCAATGTTTTGAAT 221205 Query 148178 CGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCG---TCCGTGTATAGGTTGAGCTC 148234 ||| ||| || | || || | || ||| || ||| | | | | | Sbjct 221206 CGATCCGTTGTTGGACAAGATGTTGTTCTTCATGTCAAGATCCC---ACAAACCCATCGC 221262 Query 148235 GATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCG 148294 | || || | | ||||| || ||||||||||| |||||||| | ||||| || || Sbjct 221263 TGTTAGATCTTGCAGCAGATGATGGTTCACCACCTGGAACTCGCCCGATAGCACACGTCG 221322 Query 148295 CAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGT 148354 || ||||| ||| |||| || || ||||| ||||||||||| || || || || Sbjct 221323 GTTGTAAACGTTCGACGTGTACGGCTCGAAGGACTCATTGTTGCCCAATATTTGTGCCGT 221382 Query 148355 CGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTT 148414 || || || ||||| || | ||| |||||||| || | |||| | ||| || || Sbjct 221383 CGAAGCTGTCGGCATCGGTGCCAGCAGTAGCGAGTTACGAATACCGTGCTTTGCAATCTT 221442 Query 148415 GCGCTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTG 148474 ||||| | | ||||| ||| || || |||| ||||||||| |||||||| Sbjct 221443 CTCCTTCAACTCTGTCCAGTTCCACAGATCCGTCGGTTCTTTGTTCCACATTTCGTACTG 221502 Query 148475 CAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGC 148534 || | || ||| | || | || || |||| ||| || |||| | || || Sbjct 221503 TAGGACACCCTTGCTCACTGGACAACCTTCATACGTCTCGTATGGACCGTCCCGTGCAGC 221562 Query 148535 CAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAG 148594 || ||||||||| || || || || || ||||| || || || ||||| || || Sbjct 221563 CAATTCGCAGCTTGCTTCCAGTGCTCCATAGTAGATGGTTTCAAATATTTGTTGATTCAG 221622 Query 148595 CAGCGCCGCCGACTCGCTTTCGTACGGCATA-CGCAGCCGCACAAACGCGTCGGCAAGGC 148653 | ||| ||||||||||| || ||| |||| | ||||| ||||| | || Sbjct 221623 CTTTTGGGCCTCTTCGCTTTCGTATGG-ATAGCGCATTAAAATGAACGCATCGGCCATGC 221681 Query 148654 CCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCG-AGC 148712 |||| || || | || ||||||| ||| |||||||| | ||| ||| | | | Sbjct 221682 CCTGCACACCGATACCGATGGGCCTGTGGCGCATGTTGGAACGCTTCGC-CTCCGGCACC 221740 Query 148713 GGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTT--TGTAATTC 148770 ||||||| ||| ||||||||| |||| |||||||| || | ||| | || | Sbjct 221741 GGATAGTAGTTTATGTCGATGATTTTGTTCAGATTGCGTGTTACTATCTTGGCGACATCC 221800 Query 148771 TGCGCAGCAATTCAAAATCGTACTTGTCATC------TACGATGCATCGGTTCACGGCGA 148824 | |||| | | ||||||||| | ||| ||||| ||| ||||| |||| Sbjct 221801 T--TCAGCTTTACGAAATCGTACGTCCTATCGGATTTTACGA-ACAT--GTTCAGTGCGA 221855 Query 148825 TAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGC 148884 | ||||| |||||||| || || | |||||| | |||||| || ||||| | || Sbjct 221856 TCGAGGCCAGATTGCAAACCGCAATTTCATCCTTCGACGAGTACTCCACAATCTCAGTGC 221915 Query 148885 ACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGT 148944 ||| || || || || ||| | ||||| || ||||| |||| |||||| || | Sbjct 221916 ACAAGTTAGAACACTTAATGGTGCCAATGTTCTGCTGGTTGCTTTTGCGGTTGCATGCAT 221975 Query 148945 CCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTAT---GAACCGAT 149001 ||||||||||||| |||||| |||| ||||||||||||| ||| | || ||||| Sbjct 221976 CCTTGTACAGCATATACGGTACGCCCGTTTCCACCTGCGATTCAATGATCGCGAACC--- 222032 Query 149002 GCAGGTCCTGCGCGCGCACTTGCTGCTCGTAGCGACCCTCCTGCTCGTATAAAGTATACA 149061 || ||||| || ||| || | | |||||||| | |||||| ||| |||| Sbjct 222033 ACAAATCCTGTGCCTTCACCTGGCGAATAAAACGACCCTCTTTCTCGTAGCCAGTGTACA 222092 Query 149062 GCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGA 149121 | ||||||| || || ||| ||| | |||||| || | ||| |||||||| | Sbjct 222093 GTGCCTCGAACTTTTCACCCCAGCTATCAGACAAACCGGGACAATCGTGAGGGCACATTA 222152 Query 149122 GCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGT 149181 | ||||| ||| ||| | ||| |||| ||| |||||||| || | ||| | |||| Sbjct 222153 GACTCCACATTTCGTTCGCCTCCACCCGCTCCATGAACAGATCCGGAATCCACAAGGCGT 222212 Query 149182 ACATGAGGTCGCGCGCCTTGCA-GTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACG 149240 | | | |||||| | | ||| || || ||| |||| ||| | || | Sbjct 222213 AAAACATGTCGCGTG-CACGCACCTCCTCTTTGCCGGTGTTTTTCTTCAGATCCAGAAAC 222271 Query 149241 CTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGC---TTG 149297 ||| | || |||||||||| || | ||| | || | || ||| |||| ||| Sbjct 222272 TCGAACACATCACCGTGCCACGGTTCGAGGTAGATGGCAAAAGCTCCCGGGCGCTTGTTG 222331 Query 149298 CCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCA 149357 || ||||| || |||| || || | ||||| |||| || | ||| || | | || Sbjct 222332 CCACCCTGATCCACGTATCGGGCCGTATTGTTGTACACGCGCAGCATTGGCACCAACCCG 222391 Query 149358 CTGGCAGTGCCGTTAGTAGAGCTA-ATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTT 149416 | | | | || || || | | | ||| | || ||| || | ||||||||| Sbjct 222392 TTTGAAATTCCATTCGT-GCCCGAGATGTACGTACCTTTCGCGCGAATACAGTGCACGTT 222450 Query 149417 GACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGAT 149476 | || || ||||| | | ||||| || || || | ||||| |||||| Sbjct 222451 CAGCCCAATTCCGCCAGCAGATTTTGAAATCAGTGCACACTGCTTCAGCGTATCGTAGAT 222510 Query 149477 GCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACG 149536 || || ||||||||| | |||||| |||| || || || ||| |||||| | Sbjct 222511 ACCTTCAATGCTGTCGTCCGACATGGTGAGCAAGAAACAGGACGACAACTGCGGACGTTG 222570 Query 149537 CGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCATCATCTC 149596 ||| | ||||| |||||||| || ||| || ||||| || || | || | Sbjct 222571 CGTAGCCGCCGCAAACATGGTCGGTGAGGCATGGGTAAAGTAGCGCTCCGAAAGCAGATT 222630 Query 149597 GTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAG 149656 ||| | ||||| | || ||||| || ||||| ||||| || || |||||||||| Sbjct 222631 GTAAGTCTCGATTGCTGCATCGATGTCTTCACCATGAATGCCGATCGCAACGCGCATCAA 222690 Query 149657 CATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAG--CCGTTTTCT 149714 |||||||||||||||||| | | ||| || || | ||||||| ||| ||| Sbjct 222691 CATATGCTGCGGTCGCTCAACGATCTTGCCCTTGATCTTCAACAAGTAGGACCG--CTCT 222748 Query 149715 AGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCG 149752 | || ||| |||| || || ||||| |||| ||||| Sbjct 222749 AAAGTTTTGAAGCCGAAATAGTTGTACCCAAAATCGCG 222786 >seq672 Length=1102954 Score = 116 bits (128), Expect = 4e-21 Identities = 151/206 (73%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| || || ||||| || ||||| || || ||| | | | ||||| |||| Sbjct 391600 ATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCCGACAGAGTGCGGCCA-TCCTCCAGCT 391658 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 |||| || ||| | ||||| |||||||| || || || || |||||||| || |||| Sbjct 391659 GCTTACCGGCGAAGATGAGACGCTGCTGATCTGGGGGAATTCCTTCCTTATCCTGAATCT 391718 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 || ||| | | || | |||||| | ||||| || || | |||| ||| ||||||| Sbjct 391719 TTGCCTTCACATTTTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTGATGGTCTTGCCGG 391778 Query 133636 TCAGAGTTTTTACGAAAATCTGCATG 133661 | || ||||| ||||||||||||||| Sbjct 391779 TGAGTGTTTTCACGAAAATCTGCATG 391804 >seq628 Length=1452984 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 120639 CAGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGT 120698 |||||| |||||||| ||| || || || || ||||| ||||||||||| || || Sbjct 708182 CAGGCAGGCAAAGTCACAGTGTAGTCCTTCATCACGCGAAATCAGCTCGTTCGAGAAGGT 708241 Query 120699 CAGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAA 120758 || || ||||| | || | |||| | |||| |||||||||||||| || || Sbjct 708242 AAGTCCCGGCATCAGTCCACGCTTCTTCAGCCAGAAAATGGCGGCAAAGCTACCGCTGAA 708301 Query 120759 GAACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCT 120818 ||| | || || || ||||| ||||| | |||||| | || | ||| ||||||| Sbjct 708302 GAAGATACCTTCGACAGCAGCAAACGCGACGACACGCTCGCCAAAGTTTGCCTTCTTGCT 708361 Query 120819 GTCGATCCACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCA 120865 |||||| |||| ||||| |||||||| || ||||||||||| Sbjct 708362 TGAGATCCAGTTCAGTGCCCAATCGGCCTTCTTCTTCACGCACGGCA 708408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483412388478080