Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq575 93.3 3e-14 seq949 84.2 1e-11 >seq575 Length=281738 Score = 93.3 bits (102), Expect = 3e-14 Identities = 162/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | || || | ||||| ||| || || ||| || || ||||| || || | Sbjct 24174 CACCACCGCGCAGGCGAAGCACCAGATGAAGGGTCGACTCCTTCTGAATGTTATAGTCAG 24115 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | ||||||||| | || |||| || || ||||| || ||||||||||||||||| ||| Sbjct 24114 ACAGTGTGCGTCCATCCTCCAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCCGGCG 24055 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | || || || || || ||| ||| |||| || | || || | || Sbjct 24054 GGATGCCCTCCTTATCCTGGATCTTCGCCTTC-ACATTCTCGATCGTATCCGAGGGCTCG 23996 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 || |||| || || || ||||| || | ||||| || ||||||||||| || Sbjct 23995 ACCTCAAGGGTAATAGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCGT 23943 >seq949 Length=1771395 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | |||| ||| ||||| || || || || ||||| || || Sbjct 446670 CCACCACGTAGACGAAGGACCAGATGGAGAGTCGATTCCTTCTGAATATTGTAGTCCGAC 446729 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || ||||| || || || ||||| |||| ||||||||||||| | || Sbjct 446730 AGCGTACGGCCATCTTCCAACTGCTTGCCAGCAAAGATCAGACGCTGCTGATCTGGTGGG 446789 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || || || ||| || | | ||||| || | ||| ||| || || || Sbjct 446790 ATTCCCTCCTTATCCTGAATCTT-GGCCTTAACATTCTCGATGGTATCGGATGGCTCAAC 446848 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | |||||||| || || |||| || || || ||||||||||| Sbjct 446849 CTCCAGGGTGATCGTCTTTCCAGTTAGAGTCTTGACGAAGATCTGCAT 446896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328698423536640