Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28]
1,392 sequences; 225,223,604 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq872 286 3e-72
seq672 107 2e-18
seq628 84.2 2e-11
>seq872
Length=887634
Score = 286 bits (316), Expect = 3e-72
Identities = 1140/1765 (65%), Gaps = 52/1765 (3%)
Strand=Plus/Plus
Query 146575 GCAGGTTTTGTGCGCAAATAATACATGCCCGTTTTGAGGCCACATCG-CCACGAGTGATT 146633
|| ||||| ||||||| || ||||||||||| || || || |||| ||||| ||
Sbjct 220970 GCCGGTTTGGTGCGCAGGTAGTACATGCCCGTCTTTAGTCC-CATCTTCCACGCGTAGAA 221028
Query 146634 GTGAATCGAAGTCATGATGGCGTACGTCGGCTCCGCCACGAAAAGATTAAACGATTGGCT 146693
|| ||||| |||| || | || ||||||| |||||| | ||||| |||||
Sbjct 221029 ATGGATCGACGTCAGCTTGCCATAGTTCGGCTCGGCCACGTGTATGTTAAATGATTGTGA 221088
Query 146694 TTGATCTATGAAAGCGTTGCGGTCGGCCGCCATCTCAATCATGCGTTTTGTCTTC---AT 146750
||||| || || || || ||||||||||| | | ||| | || || | ||
Sbjct 221089 CTGATCGATAAACGCTCCCCGATCGGCCGCCATTT---TGATGGATGTTTTCACCGAGAT 221145
Query 146751 TTCCCAAGCGGTTTTGTACAGCCCCTTAACGCTATCTGGAATACCTTCAATGTTTTGAAT 146810
||||| | || |||||||| | | | ||| || |||||||||||||||
Sbjct 221146 CTCCCATACCGTCTTGTACAGGTCGCGGATTTCCTTTGGTATTGATTCAATGTTTTGAAT 221205
Query 146811 AGAGCCCTTGTGCGCAAAAATAGTGTTTCGTATTTCGGG--CGTGTAAAGGTTTAGTTTA 146868
|| || |||| | || || |||| || || | | ||| | | |
Sbjct 221206 CGATCCGTTGTTGGACAAGATGTTGTTCTTCATGTCAAGATCCCACAAACCCATCGCTG- 221264
Query 146869 ATGAGGTCATCAATTAAATACTGATTGACCACTTGAAACTCGCCCGCCAGCACACGTCTG 146928
| || || | | | || || || ||||| || |||||||||| |||||||||| |
Sbjct 221265 -TTAGATCTTGCAGCAGATGATGGTTCACCACCTGGAACTCGCCCGATAGCACACGTCGG 221323
Query 146929 AGATACACATTGCTAGTGAAAGGCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTG 146988
|| || || ||| | ||||| || |||||||| ||||| |||||||| |||||
Sbjct 221324 TTGTAAACGTTCGACGTGTACGGCTCGAAGGACTCATTGTTGCCCAATATTTGTGCCGTC 221383
Query 146989 GTTGCGGTAGGCATGTACGCCACCAACAATGAATTTCGCAGACCGTAC---GCACGGATG 147045
| || || ||||| |||| || | || || || | ||||| | ||| ||
Sbjct 221384 GAAGCTGTCGGCATCGGTGCCAGCAGTAGCGAGTTACGAATACCGTGCTTTGCA---ATC 221440
Query 147046 TTGTCCTTCAAAGTTTGCCAGTCCCACATCGACGAGGGCGTCACGTTCCACATGTCGTAC 147105
|| |||||||| | ||||| ||||| || || ||||||||| ||||||
Sbjct 221441 TTCTCCTTCAACTCTGTCCAGTTCCACAGATCCGTCGGTTCTTTGTTCCACATTTCGTAC 221500
Query 147106 TGGAGCACTCCTCGACTGGCGGGACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGC 147165
|| || || || || | |||| || | |||| ||| ||||| || |||
Sbjct 221501 TGTAGGACACCCTTGCTCACTGGACAACCTTCATACGTCTCGTATGGACCGTCCCG-TGC 221559
Query 147166 -GCCAATTCACAGCTTGCCTCGAGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTT 147224
|||||||| |||||||| || || ||||||||||| |||||||| ||||||| ||
Sbjct 221560 AGCCAATTCGCAGCTTGCTTCCAGTGCTCCATAGTAGATGGTTTCAAATATTTGTTGATT 221619
Query 147225 TAGGACGGTCGCTTCTTCGCTCTCGTAAGGCATA-CGCAGAAGCACAAAGGCATCGGCCA 147283
|| || |||||||| ||||| || ||| |||| | | || ||||||||||
Sbjct 221620 CAGCTTTTGGGCCTCTTCGCTTTCGTATGG-ATAGCGCATTAAAATGAACGCATCGGCCA 221678
Query 147284 AACCCTGGATACCGACGCCGATAGGTCGATGCTTTTCGTTGCTGCGCTTCGCGCTCGCTA 147343
||||| | ||||| ||||| || | || |||| |||||||| || |
Sbjct 221679 TGCCCTGCACACCGATACCGATGGGCCTGTGGCGCATGTTGGAACGCTTCGCCTCCGGCA 221738
Query 147344 TGGGATAGTGGTTGCGATCAATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTG 147403
||||||| ||| || || || ||||| || || || ||| | || | |
Sbjct 221739 CCGGATAGTAGTTTATGTCGATGATTTTGTTCAGATTGCGTGTTACTATCTTGGCGACAT 221798
Query 147404 TTTTGAGTTTCTCGAAATCATAAGTCCCGTCTTCGACACGTACGCATTGGTTCACGGCGA 147463
|| || || ||||||| || |||| ||| |||| | ||||| ||||
Sbjct 221799 CCTTCAGCTTTACGAAATCGTACGTCC---TATCGGATTTTACGAACATGTTCAGTGCGA 221855
Query 147464 TAGACGCCAGATTGCAGACGGCCGTCTC-TTCGGCGTCGCTGTACTGCACGATTTCGGCG 147522
| || ||||||||||| || || | || | | || || ||||| ||| || || | |
Sbjct 221856 TCGAGGCCAGATTGCAAACCGCAATTTCATCCTTCGACG-AGTACTCCACAATCTCAGTG 221914
Query 147523 CACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCG 147582
|||| ||| || || ||| || | || ||||| |||||||| || ||||| ||
Sbjct 221915 CACAAGTTAGAACACTTAATGGTGCCAATGTTCTGCTGGTTGCTTTTGCGGTTGCATGCA 221974
Query 147583 TCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGAT---AAACCTA 147639
|| ||| | ||||| |||||| |||| || || || |||| ||||| ||| ||||
Sbjct 221975 TCCTTGTACAGCATATACGGTACGCCCGTTTCCACCTGCGATTCAATGATCGCGAACC-- 222032
Query 147640 TGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTAC 147699
|| ||||| || |||| | | | | || ||||| || ||||| | ||||
Sbjct 222033 -ACAAATCCTGTGCCTTCACCTGGCGAATAAAACGACCCTCTTTCTCGTAGCCAGTGTAC 222091
Query 147700 AACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATC 147759
| ||| |||| || || ||| ||| | | |||||||| | || || |||||
Sbjct 222092 AGTGCCTCGAACTTTTCACCCCAGCTATCAGACAAACCGGGACAATCGTGAGGGCACATT 222151
Query 147760 AGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCG 147819
|| |||||| |||| ||| | || || ||| ||||||||||| | ||||| |||
Sbjct 222152 AGACTCCACATTTCGTTCGCCTCCACCCGCTCCATGAACAGATCCGGAATCCACAAGGCG 222211
Query 147820 TACATAAGATCGCGCGCTTTGCA-ATCCTCGGCGCCCATGTTGCGTTTCAAATTAAG-CA 147877
|| | | ||||| || ||| ||||| ||| |||| |||| || || |
Sbjct 222212 TAAAACATGTCGCGTGC-ACGCACCTCCTCTTTGCCGGTGTTTTTCTTCAGATCCAGAAA 222270
Query 147878 CGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGC---T 147934
| | | | | || ||||||| ||||| | ||||| ||| | || || ||| |
Sbjct 222271 CTCGA-ACACATCACCGTGCCACGGTTCGAGGTAGATGGCAAAAGCTCCCGGGCGCTTGT 222329
Query 147935 TTCCGCCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGC 147994
| || ||||| || || | || || | ||||| ||||||||| ||| || ||| |
Sbjct 222330 TGCCACCCTGATCCACGTATCGGGCCGTATTGTTGTACACGCGCAGCATTGGCACCAACC 222389
Query 147995 CGCTCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGT 148054
|| | | | | || || ||| ||| | | || || || | ||||||||
Sbjct 222390 CGTTTGAAATTCCATTCGTGCCCGAGATGTACGTACCTTTCGCGCGAATACAGTGCACGT 222449
Query 148055 TAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCA-ATCGC-CCAATGTCGTGTA 148112
| | ||||| ||||| | | ||||| || ||| ||| | || || || |||
Sbjct 222450 TCAGCCCAATTCCGCCAGCAGATTTTGAAAT--CAGTGCACACTGCTTCAGCGTATCGTA 222507
Query 148113 GATGCCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAAT 148172
||| || || |||||||||| | | ||||| ||||| || ||| ||||||
Sbjct 222508 GATACCTTCAATGCTGTCGTCCGACATGGTGAGCAAGAAACAGGACGACAACTGCGGACG 222567
Query 148173 CCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCAT 148232
|||| |||||| || | ||| || || || ||||| | ||| |
Sbjct 222568 TTGCGTAGCCGCCGCAAACATGGTCGGTGAGGCATGGGTAAA----GTAGCGCTCCGAAA 222623
Query 148233 GC-GA---TACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGC 148288
|| || || ||||| || || | |||||||| || || |||||||| | ||| ||||
Sbjct 222624 GCAGATTGTAAGTCTCGATTGCTGCATCGATGTCTTCACCATGAATGCCGATCGCAACGC 222683
Query 148289 GCATGAGCATGTGCTGTGGTCGTTC 148313
|||| | ||| ||||| ||||| ||
Sbjct 222684 GCATCAACATATGCTGCGGTCGCTC 222708
>seq672
Length=1102954
Score = 107 bits (118), Expect = 2e-18
Identities = 154/217 (71%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968
|||| |||| ||| | | | || || || |||||||||||||| || || || |
Sbjct 391589 CGCAGCACCAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCCGACAGAGTGCGGCCA 391648
Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028
|| || ||||| ||||||| |||| |||||||| |||||||| || || ||||| |||
Sbjct 391649 TCCTCCAGCTGCTTACCGGCGAAGATGAGACGCTGCTGATCTGGGGGAATTCCTTCCTTA 391708
Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088
|| ||| ||| |||| | ||| | || || | ||||| || || | || |
Sbjct 391709 TCCTGAATCTTTGCCTTCACATTTTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTGATG 391768
Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGA 132125
|| || || || || ||||| | ||||||||||||||
Sbjct 391769 GTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCATGA 391805
>seq628
Length=1452984
Score = 84.2 bits (92), Expect = 2e-11
Identities = 154/226 (68%), Gaps = 0/226 (0%)
Strand=Plus/Minus
Query 46759 TGCCATGCGTTCGCAAAAAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGAGACCGCCA 46818
|||| ||||| || |||||| | ||||| |||| |||||| ||| ||| || |
Sbjct 708408 TGCCGTGCGTGAAGAAGAAGGCCGATTGGGCACTGAACTGGATCTCAAGCAAGAAGGCAA 708349
Query 46819 CGCTGGCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGTT 46878
| | |||||| | || || || || |||||||| | || || || || |
Sbjct 708348 ACTTTGGCGAGCGTGTCGTCGCGTTTGCTGCTGTCGAAGGTATCTTCTTCAGCGGTAGCT 708289
Query 46879 TTGCCGCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACG 46938
||||||||||||| | | || | || | |||||||| || || ||| ||||
Sbjct 708288 TTGCCGCCATTTTCTGGCTGAAGAAGCGTGGACTGATGCCGGGACTTACCTTCTCGAACG 708229
Query 46939 AGTTGATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTGTCT 46984
|| |||| ||||| || |||||||||||| |||||||| || ||
Sbjct 708228 AGCTGATTTCGCGTGATGAAGGACTACACTGTGACTTTGCCTGCCT 708183
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476602906965120
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