Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq872 286 3e-72 seq672 107 2e-18 seq628 84.2 2e-11 >seq872 Length=887634 Score = 286 bits (316), Expect = 3e-72 Identities = 1140/1765 (65%), Gaps = 52/1765 (3%) Strand=Plus/Plus Query 146575 GCAGGTTTTGTGCGCAAATAATACATGCCCGTTTTGAGGCCACATCG-CCACGAGTGATT 146633 || ||||| ||||||| || ||||||||||| || || || |||| ||||| || Sbjct 220970 GCCGGTTTGGTGCGCAGGTAGTACATGCCCGTCTTTAGTCC-CATCTTCCACGCGTAGAA 221028 Query 146634 GTGAATCGAAGTCATGATGGCGTACGTCGGCTCCGCCACGAAAAGATTAAACGATTGGCT 146693 || ||||| |||| || | || ||||||| |||||| | ||||| ||||| Sbjct 221029 ATGGATCGACGTCAGCTTGCCATAGTTCGGCTCGGCCACGTGTATGTTAAATGATTGTGA 221088 Query 146694 TTGATCTATGAAAGCGTTGCGGTCGGCCGCCATCTCAATCATGCGTTTTGTCTTC---AT 146750 ||||| || || || || ||||||||||| | | ||| | || || | || Sbjct 221089 CTGATCGATAAACGCTCCCCGATCGGCCGCCATTT---TGATGGATGTTTTCACCGAGAT 221145 Query 146751 TTCCCAAGCGGTTTTGTACAGCCCCTTAACGCTATCTGGAATACCTTCAATGTTTTGAAT 146810 ||||| | || |||||||| | | | ||| || ||||||||||||||| Sbjct 221146 CTCCCATACCGTCTTGTACAGGTCGCGGATTTCCTTTGGTATTGATTCAATGTTTTGAAT 221205 Query 146811 AGAGCCCTTGTGCGCAAAAATAGTGTTTCGTATTTCGGG--CGTGTAAAGGTTTAGTTTA 146868 || || |||| | || || |||| || || | | ||| | | | Sbjct 221206 CGATCCGTTGTTGGACAAGATGTTGTTCTTCATGTCAAGATCCCACAAACCCATCGCTG- 221264 Query 146869 ATGAGGTCATCAATTAAATACTGATTGACCACTTGAAACTCGCCCGCCAGCACACGTCTG 146928 | || || | | | || || || ||||| || |||||||||| |||||||||| | Sbjct 221265 -TTAGATCTTGCAGCAGATGATGGTTCACCACCTGGAACTCGCCCGATAGCACACGTCGG 221323 Query 146929 AGATACACATTGCTAGTGAAAGGCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTG 146988 || || || ||| | ||||| || |||||||| ||||| |||||||| ||||| Sbjct 221324 TTGTAAACGTTCGACGTGTACGGCTCGAAGGACTCATTGTTGCCCAATATTTGTGCCGTC 221383 Query 146989 GTTGCGGTAGGCATGTACGCCACCAACAATGAATTTCGCAGACCGTAC---GCACGGATG 147045 | || || ||||| |||| || | || || || | ||||| | ||| || Sbjct 221384 GAAGCTGTCGGCATCGGTGCCAGCAGTAGCGAGTTACGAATACCGTGCTTTGCA---ATC 221440 Query 147046 TTGTCCTTCAAAGTTTGCCAGTCCCACATCGACGAGGGCGTCACGTTCCACATGTCGTAC 147105 || |||||||| | ||||| ||||| || || ||||||||| |||||| Sbjct 221441 TTCTCCTTCAACTCTGTCCAGTTCCACAGATCCGTCGGTTCTTTGTTCCACATTTCGTAC 221500 Query 147106 TGGAGCACTCCTCGACTGGCGGGACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGC 147165 || || || || || | |||| || | |||| ||| ||||| || ||| Sbjct 221501 TGTAGGACACCCTTGCTCACTGGACAACCTTCATACGTCTCGTATGGACCGTCCCG-TGC 221559 Query 147166 -GCCAATTCACAGCTTGCCTCGAGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTT 147224 |||||||| |||||||| || || ||||||||||| |||||||| ||||||| || Sbjct 221560 AGCCAATTCGCAGCTTGCTTCCAGTGCTCCATAGTAGATGGTTTCAAATATTTGTTGATT 221619 Query 147225 TAGGACGGTCGCTTCTTCGCTCTCGTAAGGCATA-CGCAGAAGCACAAAGGCATCGGCCA 147283 || || |||||||| ||||| || ||| |||| | | || |||||||||| Sbjct 221620 CAGCTTTTGGGCCTCTTCGCTTTCGTATGG-ATAGCGCATTAAAATGAACGCATCGGCCA 221678 Query 147284 AACCCTGGATACCGACGCCGATAGGTCGATGCTTTTCGTTGCTGCGCTTCGCGCTCGCTA 147343 ||||| | ||||| ||||| || | || |||| |||||||| || | Sbjct 221679 TGCCCTGCACACCGATACCGATGGGCCTGTGGCGCATGTTGGAACGCTTCGCCTCCGGCA 221738 Query 147344 TGGGATAGTGGTTGCGATCAATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTG 147403 ||||||| ||| || || || ||||| || || || ||| | || | | Sbjct 221739 CCGGATAGTAGTTTATGTCGATGATTTTGTTCAGATTGCGTGTTACTATCTTGGCGACAT 221798 Query 147404 TTTTGAGTTTCTCGAAATCATAAGTCCCGTCTTCGACACGTACGCATTGGTTCACGGCGA 147463 || || || ||||||| || |||| ||| |||| | ||||| |||| Sbjct 221799 CCTTCAGCTTTACGAAATCGTACGTCC---TATCGGATTTTACGAACATGTTCAGTGCGA 221855 Query 147464 TAGACGCCAGATTGCAGACGGCCGTCTC-TTCGGCGTCGCTGTACTGCACGATTTCGGCG 147522 | || ||||||||||| || || | || | | || || ||||| ||| || || | | Sbjct 221856 TCGAGGCCAGATTGCAAACCGCAATTTCATCCTTCGACG-AGTACTCCACAATCTCAGTG 221914 Query 147523 CACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCG 147582 |||| ||| || || ||| || | || ||||| |||||||| || ||||| || Sbjct 221915 CACAAGTTAGAACACTTAATGGTGCCAATGTTCTGCTGGTTGCTTTTGCGGTTGCATGCA 221974 Query 147583 TCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGAT---AAACCTA 147639 || ||| | ||||| |||||| |||| || || || |||| ||||| ||| |||| Sbjct 221975 TCCTTGTACAGCATATACGGTACGCCCGTTTCCACCTGCGATTCAATGATCGCGAACC-- 222032 Query 147640 TGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTAC 147699 || ||||| || |||| | | | | || ||||| || ||||| | |||| Sbjct 222033 -ACAAATCCTGTGCCTTCACCTGGCGAATAAAACGACCCTCTTTCTCGTAGCCAGTGTAC 222091 Query 147700 AACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATC 147759 | ||| |||| || || ||| ||| | | |||||||| | || || ||||| Sbjct 222092 AGTGCCTCGAACTTTTCACCCCAGCTATCAGACAAACCGGGACAATCGTGAGGGCACATT 222151 Query 147760 AGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCG 147819 || |||||| |||| ||| | || || ||| ||||||||||| | ||||| ||| Sbjct 222152 AGACTCCACATTTCGTTCGCCTCCACCCGCTCCATGAACAGATCCGGAATCCACAAGGCG 222211 Query 147820 TACATAAGATCGCGCGCTTTGCA-ATCCTCGGCGCCCATGTTGCGTTTCAAATTAAG-CA 147877 || | | ||||| || ||| ||||| ||| |||| |||| || || | Sbjct 222212 TAAAACATGTCGCGTGC-ACGCACCTCCTCTTTGCCGGTGTTTTTCTTCAGATCCAGAAA 222270 Query 147878 CGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGC---T 147934 | | | | | || ||||||| ||||| | ||||| ||| | || || ||| | Sbjct 222271 CTCGA-ACACATCACCGTGCCACGGTTCGAGGTAGATGGCAAAAGCTCCCGGGCGCTTGT 222329 Query 147935 TTCCGCCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGC 147994 | || ||||| || || | || || | ||||| ||||||||| ||| || ||| | Sbjct 222330 TGCCACCCTGATCCACGTATCGGGCCGTATTGTTGTACACGCGCAGCATTGGCACCAACC 222389 Query 147995 CGCTCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGT 148054 || | | | | || || ||| ||| | | || || || | |||||||| Sbjct 222390 CGTTTGAAATTCCATTCGTGCCCGAGATGTACGTACCTTTCGCGCGAATACAGTGCACGT 222449 Query 148055 TAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCA-ATCGC-CCAATGTCGTGTA 148112 | | ||||| ||||| | | ||||| || ||| ||| | || || || ||| Sbjct 222450 TCAGCCCAATTCCGCCAGCAGATTTTGAAAT--CAGTGCACACTGCTTCAGCGTATCGTA 222507 Query 148113 GATGCCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAAT 148172 ||| || || |||||||||| | | ||||| ||||| || ||| |||||| Sbjct 222508 GATACCTTCAATGCTGTCGTCCGACATGGTGAGCAAGAAACAGGACGACAACTGCGGACG 222567 Query 148173 CCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCAT 148232 |||| |||||| || | ||| || || || ||||| | ||| | Sbjct 222568 TTGCGTAGCCGCCGCAAACATGGTCGGTGAGGCATGGGTAAA----GTAGCGCTCCGAAA 222623 Query 148233 GC-GA---TACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGC 148288 || || || ||||| || || | |||||||| || || |||||||| | ||| |||| Sbjct 222624 GCAGATTGTAAGTCTCGATTGCTGCATCGATGTCTTCACCATGAATGCCGATCGCAACGC 222683 Query 148289 GCATGAGCATGTGCTGTGGTCGTTC 148313 |||| | ||| ||||| ||||| || Sbjct 222684 GCATCAACATATGCTGCGGTCGCTC 222708 >seq672 Length=1102954 Score = 107 bits (118), Expect = 2e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| |||| ||| | | | || || || |||||||||||||| || || || | Sbjct 391589 CGCAGCACCAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCCGACAGAGTGCGGCCA 391648 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || || ||||| ||||||| |||| |||||||| |||||||| || || ||||| ||| Sbjct 391649 TCCTCCAGCTGCTTACCGGCGAAGATGAGACGCTGCTGATCTGGGGGAATTCCTTCCTTA 391708 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||| ||| |||| | ||| | || || | ||||| || || | || | Sbjct 391709 TCCTGAATCTTTGCCTTCACATTTTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTGATG 391768 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGA 132125 || || || || || ||||| | |||||||||||||| Sbjct 391769 GTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCATGA 391805 >seq628 Length=1452984 Score = 84.2 bits (92), Expect = 2e-11 Identities = 154/226 (68%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 46759 TGCCATGCGTTCGCAAAAAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGAGACCGCCA 46818 |||| ||||| || |||||| | ||||| |||| |||||| ||| ||| || | Sbjct 708408 TGCCGTGCGTGAAGAAGAAGGCCGATTGGGCACTGAACTGGATCTCAAGCAAGAAGGCAA 708349 Query 46819 CGCTGGCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGTT 46878 | | |||||| | || || || || |||||||| | || || || || | Sbjct 708348 ACTTTGGCGAGCGTGTCGTCGCGTTTGCTGCTGTCGAAGGTATCTTCTTCAGCGGTAGCT 708289 Query 46879 TTGCCGCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACG 46938 ||||||||||||| | | || | || | |||||||| || || ||| |||| Sbjct 708288 TTGCCGCCATTTTCTGGCTGAAGAAGCGTGGACTGATGCCGGGACTTACCTTCTCGAACG 708229 Query 46939 AGTTGATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTGTCT 46984 || |||| ||||| || |||||||||||| |||||||| || || Sbjct 708228 AGCTGATTTCGCGTGATGAAGGACTACACTGTGACTTTGCCTGCCT 708183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476602906965120