Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq872 141 8e-29 >seq872 Length=887634 Score = 141 bits (156), Expect = 8e-29 Identities = 501/776 (65%), Gaps = 19/776 (2%) Strand=Plus/Plus Query 136638 CACGGTGAATTGGATTGTATTCGCGGCAGGTTTAGTTCTCAGATAGTACATGCCCGTCTT 136697 ||| || |||||||| | ||| |||| ||||| || | ||| ||||||||||||||||| Sbjct 220945 CACCGTAAATTGGATGGCATTTACGGCCGGTTTGGTGCGCAGGTAGTACATGCCCGTCTT 221004 Query 136698 TAAACCCTTCTCCCAGGAATAATTATGTATAGATGACAAAATTTTATAGCTCGGATCGGC 136757 || ||| ||| ||| | || ||| || || | || | |||| |||| ||||| Sbjct 221005 TAGTCCCATCTTCCACGCGTAGAAATGGATCGACGTCAGCTTGCCATAGTTCGGCTCGGC 221064 Query 136758 CACGAAAAGATTTAGCGATTGGCTCTGATCGATGTAAGGTCCGCGGTCTGCGGCCATGTT 136817 |||| | || | ||||| ||||||||| | | ||| || || || ||||| || Sbjct 221065 CACGTGTATGTTAAATGATTGTGACTGATCGATAAACGCTCCCCGATCGGCCGCCATTTT 221124 Query 136818 CAATAGTACTTTTTGCTTA-ATTTCCCAAGCGGTTTTAAAGAGCTCCTTGACATTGGGCG 136876 | | | |||| | | || ||||| | || || | || || || | | Sbjct 221125 GA-TGGATGTTTTCACCGAGATCTCCCATACCGTCTTGTACAGGTCGCGGATTTCCTTTG 221183 Query 136877 GAATTTCATCGATATTCTGTACAGATCCGTTGTTTTT---GATGATTTTCATCATG---A 136930 | ||| || || || || | ||||||||||| |||| | ||| ||||| | Sbjct 221184 GTATTGATTCAATGTTTTGAATCGATCCGTTGTTGGACAAGATGTTGTTCTTCATGTCAA 221243 Query 136931 GATCAGTCGAGTATACGTTGCTCTCTATGAGTTTATCGACGAGATGCTGATTTACTACTT 136990 |||| | | | || || | || | | | ||||| || || || || | Sbjct 221244 GATCCCACAAACCCA------TCGCTGTTAGATCTTGCAGCAGATGATGGTTCACCACCT 221297 Query 136991 GATATTCGCCCGATAGCACTCTGCGTACGTACAGATTACTAGTGAACGGCTCGAACGATT 137050 | | |||||||||||||| | || ||| | || ||| |||||||||| || | Sbjct 221298 GGAACTCGCCCGATAGCACACGTCGGTTGTAAACGTTCGACGTGTACGGCTCGAAGGACT 221357 Query 137051 CGTTGTTACCCAAAATCTGTGCAGTCGTCGCTGTCGGCATGTAAGCGATCAACAATGAAT 137110 | ||||| ||||| || ||||| |||| ||||||||||| || | || | || | Sbjct 221358 CATTGTTGCCCAATATTTGTGCCGTCGAAGCTGTCGGCATCGGTGCCAGCAGTAGCGAGT 221417 Query 137111 TCCGTAAACCGTGTACGGCCAATTGTTGCTTGAGCTCTTTCCAGTTCCACAGATTGTTCG 137170 | || | |||||| || | | | ||| | |||| ||||||||||||||| ||| Sbjct 221418 TACGAATACCGTGCTTTGCAATCTTCTCCTTCAACTCTGTCCAGTTCCACAGATCCGTCG 221477 Query 137171 ATTGGGTTATATTCCACAAATCAAACTGCAAAAGTCCGCGACTTGCAGGACTTTCTGCAT 137230 || | | ||||||| || |||| | | || || | |||| || ||| Sbjct 221478 GTT---CTTTGTTCCACATTTCGTACTGTAGGACACCCTTGCTCACTGGACAACCTTCAT 221534 Query 137231 AAGAATCATATGTTCCGTGCAGTTTCGCCAGTTCAATACTCTGGACTAGTGCGCCATAGT 137290 | | || |||| |||| | || |||| ||| || | ||||| ||||||| Sbjct 221535 ACGTCTCGTATGGACCGTCCCGTGCAGCCAATTCGCAGCTTGCTTCCAGTGCTCCATAGT 221594 Query 137291 AAATAGTTTCGGAGATTTTTCTATTCAATTCTCTAGCTTCTTGGCTGTCGTAGGGCATAT 137350 | || ||||| | |||| | ||||| | | || |||| ||| ||||| || ||| Sbjct 221595 AGATGGTTTCAAATATTTGTTGATTCAGCTTTTGGGCCTCTTCGCTTTCGTATGG-ATAG 221653 Query 137351 C-CAATATAGCGAAAGCATCTGCAAGTCCTTGAATACCGATACCGATAGGTCTGTG 137405 | || || | ||| ||||| || | || || | |||||||||||| || ||||| Sbjct 221654 CGCATTAAAATGAACGCATCGGCCATGCCCTGCACACCGATACCGATGGGCCTGTG 221709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445086655357440