Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1214 136 6e-26 seq628 93.3 6e-13 >seq1214 Length=3694 Score = 136 bits (150), Expect = 6e-26 Identities = 170/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||||| ||||| |||||||| || ||| |||| || ||| | Sbjct 2652 ATCTACAAGGTGCTGAAGCAAGTGCACCCGGACAC---TGG--CATC-TCGTCGAAGGCT 2705 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||| ||||| ||||| || |||| ||||| | | ||||| Sbjct 2706 ATGAGCATCATGAACAGCTTTGTGAACGATATTTTCGAACGCATTGCTGCGGAGGCATCC 2765 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 |||||||||| || |||||||||| |||||| ||||||| ||||||||||| || Sbjct 2766 CGCCTGGCGCACTACAACAAGCGCTCGACGATCACATCGCGCGAAATCCAGACCGCTGTC 2825 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || ||| || ||| ||| || ||||||| ||||||||| ||||| || || Sbjct 2826 CGTCTGCTCCTGCCCGGTGAGCTGGCCAAGCACGCCGTGTCCGAAGGTAC 2875 >seq628 Length=1452984 Score = 93.3 bits (102), Expect = 6e-13 Identities = 182/265 (69%), Gaps = 3/265 (1%) Strand=Plus/Minus Query 1455796 AGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACT 1455855 |||| || || || || ||||||| || ||||| || || | |||| | ||| Sbjct 708794 AGGCGGAAGCTTCGTTCTGGACCGTGGAAGAGGTGGATCTGTCCAAGGACATGAAAGACT 708735 Query 1455856 GGGTGTCGCTGAGCGACGA-CGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGC 1455914 ||| ||| ||| ||| ||| ||||| || ||| |||||| || ||||| ||| || Sbjct 708734 GGGATTCGTTGAAAC-CGAGCGAACGCCACTTTATCTCGCACGTACTTGCCTTCTTT-GC 708677 Query 1455915 CGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATT 1455974 ||| ||||||||||||| ||| ||||||| || || || | | ||||| || | Sbjct 708676 CGCATCCGATGGCATCGTGAACGAAAACCTGGTCGAACGTTTCAGCCAGGAGGTACAGGT 708617 Query 1455975 GCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAAC 1456034 | || || || | |||||||| || || || || || ||||| | ||| || | Sbjct 708616 AACGGAAGCTCGCTGTTTTTACGGCTTTCAAATAGCGATGGAAAATGTGCACAGCGAGAT 708557 Query 1456035 CTACTCGCTCCTGATCGACACCTAC 1456059 ||||| || || |||||||| ||| Sbjct 708556 GTACTCACTGCTAATCGACACGTAC 708532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177676939041504