Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28]
1,392 sequences; 225,223,604 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq1214 136 6e-26
seq628 93.3 6e-13
>seq1214
Length=3694
Score = 136 bits (150), Expect = 6e-26
Identities = 170/230 (74%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970
|||||||||||||| ||||| |||||||| || ||| |||| || ||| |
Sbjct 2652 ATCTACAAGGTGCTGAAGCAAGTGCACCCGGACAC---TGG--CATC-TCGTCGAAGGCT 2705
Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030
||| ||||||||| ||||| ||||| || |||| ||||| | | |||||
Sbjct 2706 ATGAGCATCATGAACAGCTTTGTGAACGATATTTTCGAACGCATTGCTGCGGAGGCATCC 2765
Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090
|||||||||| || |||||||||| |||||| ||||||| ||||||||||| ||
Sbjct 2766 CGCCTGGCGCACTACAACAAGCGCTCGACGATCACATCGCGCGAAATCCAGACCGCTGTC 2825
Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140
|| ||| || ||| ||| || ||||||| ||||||||| ||||| || ||
Sbjct 2826 CGTCTGCTCCTGCCCGGTGAGCTGGCCAAGCACGCCGTGTCCGAAGGTAC 2875
>seq628
Length=1452984
Score = 93.3 bits (102), Expect = 6e-13
Identities = 182/265 (69%), Gaps = 3/265 (1%)
Strand=Plus/Minus
Query 1455796 AGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACT 1455855
|||| || || || || ||||||| || ||||| || || | |||| | |||
Sbjct 708794 AGGCGGAAGCTTCGTTCTGGACCGTGGAAGAGGTGGATCTGTCCAAGGACATGAAAGACT 708735
Query 1455856 GGGTGTCGCTGAGCGACGA-CGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGC 1455914
||| ||| ||| ||| ||| ||||| || ||| |||||| || ||||| ||| ||
Sbjct 708734 GGGATTCGTTGAAAC-CGAGCGAACGCCACTTTATCTCGCACGTACTTGCCTTCTTT-GC 708677
Query 1455915 CGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATT 1455974
||| ||||||||||||| ||| ||||||| || || || | | ||||| || |
Sbjct 708676 CGCATCCGATGGCATCGTGAACGAAAACCTGGTCGAACGTTTCAGCCAGGAGGTACAGGT 708617
Query 1455975 GCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAAC 1456034
| || || || | |||||||| || || || || || ||||| | ||| || |
Sbjct 708616 AACGGAAGCTCGCTGTTTTTACGGCTTTCAAATAGCGATGGAAAATGTGCACAGCGAGAT 708557
Query 1456035 CTACTCGCTCCTGATCGACACCTAC 1456059
||||| || || |||||||| |||
Sbjct 708556 GTACTCACTGCTAATCGACACGTAC 708532
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177676939041504
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |