Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq672 109 5e-19 seq575 104 2e-17 seq628 87.8 2e-12 seq949 86.0 6e-12 >seq672 Length=1102954 Score = 109 bits (120), Expect = 5e-19 Identities = 173/246 (70%), Gaps = 4/246 (2%) Strand=Plus/Plus Query 35507 TTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCG 35566 || |||||||| | | || ||||| ||| | ||| ||||| ||||||||||| || Sbjct 391574 TTACCACCACGAAGTCGCAGCACCAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCC 391633 Query 35567 GCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAA 35626 | || || || | || |||||||||||||| || || || | |||||||| || | Sbjct 391634 GACAGAGTGCGGCCATCCTCCAGCTGCTTACCGGCGAAGATGAGACGCTGCTGATCTGGG 391693 Query 35627 GGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCC 35686 |||| | ||||| ||| |||||| ||||| | || | | |||||| | || Sbjct 391694 GGAATTCCTTCCTTATCCTGAATCTTTGCCTTCACATTTTCGATCGTGTCCGAAGGCTCG 391753 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGC---ATTCTG-TG 35742 ||||| | ||||| || || || || | |||||||| || |||||| |||||| || Sbjct 391754 ACCTCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCATGATTCTGATG 391813 Query 35743 CGCACA 35748 ||||| Sbjct 391814 AGCACA 391819 >seq575 Length=281738 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||| ||| | || |||||| |||||||| || || | || || || | || || Sbjct 24155 CACCAGATGAAGGGTCGACTCCTTCTGAATGTTATAGTCAGACAGTGTGCGTCCATCCTC 24096 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 |||||||||||| || || ||||| |||||||| |||| || | || |||||| ||| Sbjct 24095 CAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCCGGCGGGATGCCCTCCTTATCCTG 24036 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 |||||| ||||| | | | | ||| || | || ||||| | || || || || Sbjct 24035 GATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATAGTCTT 23976 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||||| | ||||| || || |||||||| Sbjct 23975 ACCCGTGAGGGTTTTGACGAAGATCTGCAT 23946 >seq628 Length=1452984 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 44163 GAAGGTAAAATGCACCAATACATGCGTATGTATTGGTGCAAGAAGATATTGGAGTGGTCG 44222 || |||||||||||| | | | ||||| ||| ||| |||||| | |||||| | Sbjct 270569 GAGGGTAAAATGCACGGCTTTCTAAGGATGTACTGGGCCAAAAAGATACTCGAGTGGACA 270628 Query 44223 GAAGATGCGCAAACC-GCGCTCGTTCATGCCATCTATCTGAACGACAAGTACAGTTTGGA 44281 || | || | | ||||| | ||||||||||||||||| ||||||| |||| Sbjct 270629 AAA-ACGCCCGAGGAAGCGCTTGAAACGGCCATCTATCTGAACGATCGGTACAGTCTGGA 270687 Query 44282 CGGTCGCGACCCCAACGGGTACGTAGGATGTATGTGGTCCATTTGCGGTGTCCACGA-CA 44340 || ||||| || ||||| ||||| || || |||||||| ||| || | ||||| || Sbjct 270688 TGGACGCGATCCGAACGGTTACGTCGGTTGCATGTGGTCGATTGCGGGCATTCACGATCA 270747 Query 44341 GGGCGTGGCGAGAGCTACCCATCTACGGCAAAGTGCGCTACATGAACTA 44389 ||| ||| |||| || | ||||||| | | ||||||||||| Sbjct 270748 GGG-ATGGAAGGAGCGTGAAATTTTCGGCAAAATTAGGTACATGAACTA 270795 >seq949 Length=1771395 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 35506 ATTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATC 35565 || ||||||||||| | | |||| ||| | || ||||| ||||| ||||| || Sbjct 446666 ATATCCACCACGTAGACGAAGGACCAGATGGAGAGTCGATTCCTTCTGAATATTGTAGTC 446725 Query 35566 GGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGA 35625 | || || || | || |||| |||||| || ||||| |||| |||||||| || | Sbjct 446726 CGACAGCGTACGGCCATCTTCCAACTGCTTGCCAGCAAAGATCAGACGCTGCTGATCTGG 446785 Query 35626 AGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTC 35685 || | | |||||| ||| ||||| ||| | | | | | || ||| | || Sbjct 446786 TGGGATTCCCTCCTTATCCTGAATCTTGGCCTTAACATTCTCGATGGTATCGGATGGCTC 446845 Query 35686 CACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATT 35737 ||||||| |||||||| || || || | ||| || || || ||||||||| Sbjct 446846 AACCTCCAGGGTGATCGTCTTTCCAGTTAGAGTCTTGACGAAGATCTGCATT 446897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450785756191360