Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28]
1,392 sequences; 225,223,604 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq872 257 2e-63
seq672 118 1e-21
seq575 95.1 1e-14
seq949 93.3 4e-14
>seq872
Length=887634
Score = 257 bits (284), Expect = 2e-63
Identities = 1196/1873 (64%), Gaps = 58/1873 (3%)
Strand=Plus/Minus
Query 7474 GAGCGCGATTACGATTACCGTTATTTTGCCGTAAAAACTTTAAAAAACGG--CTACTTGT 7531
|| ||||||| | ||| ||||| | | | ||||||||| | ||| ||||||||
Sbjct 222789 GATCGCGATTTTGGGTACAACTATTTCGGCTTCAAAACTTTAGAG--CGGTCCTACTTGT 222732
Query 7532 TGAAAATCAACGGCGAATGCGCGGAACGAATTCAACACATGCTGTTGCGCGTGGCGGTGG 7591
|||| ||||| ||| | || || ||| || || ||| || ||||||| ||| | |
Sbjct 222731 TGAAGATCAAGGGCAAGATCGTTGAGCGACCGCAGCATATGTTGATGCGCGTTGCGATCG 222672
Query 7592 GCATTCACGGCGAAGACATTGACGCCGCCTTGGAAACGTACCAAATGATGTCTTTGAAAC 7651
||||||| || |||||||| || || || | || || ||| | || | || |
Sbjct 222671 GCATTCATGGTGAAGACATCGATGCAGCAATCGAGACTTACAATCTGCTTTCGGAGCGCT 222612
Query 7652 AGTTTACGCACGCTTCGCCCACCATGTTTGCCGCGGGCAC-AAACGCGCCTCAATTGTCC 7710
| ||||| || || || || ||||||||||| |||| || |||| || || |||||
Sbjct 222611 ACTTTACCCATGCCTCACCGACCATGTTTGCGGCGGCTACGCAACG-TCCGCAGTTGTCG 222553
Query 7711 TCGTGTTTTTTGCTAACCATGCGCGAAGACAGCATCGACGGCATTTACAACACGCTGCGC 7770
|| ||||| ||||| |||||| || |||||||| || || || ||| | ||||||
Sbjct 222552 TCCTGTTTCTTGCTCACCATGTCGGACGACAGCATTGAAGGTATCTACGATACGCTGAAG 222493
Query 7771 GATTGCGCCAATATTTCCAAATACGGCGGCGGAATAGGTCTGAACGTAAACGACGTGCGC 7830
| || || ||||| |||| | |||||||| || |||||||| || | |||
Sbjct 222492 CAGTGTGCACTGATTTCAAAATCTGCTGGCGGAATTGGGCTGAACGTGCACTGTATTCGC 222433
Query 7831 GCCAACGGTAGCCGCATCGTGTCCACCAACGGAAAAGCCAGCGGTTTAGAGCCCATGTTG 7890
|| || |||| |||| | ||| || |||| | | ||| || | ||| ||| ||
Sbjct 222432 GCGAAAGGTACGTACATCTCGGGCACGAATGGAATTTCAAACGGGTTGGTGCCAATGCTG 222373
Query 7891 CGCGTGTTCAATAACGCGGTGCGACATGTAGACCAGGGGGG---AAAGCGCAAAGGCGCC 7947
||||||| ||| || ||| ||| | || || ||||| || |||||| || ||
Sbjct 222372 CGCGTGTACAACAATACGGCCCGATACGTGGATCAGGGTGGCAACAAGCGCCCGGGAGCT 222313
Query 7948 GCTGCCATCTATTTGGAGCCGTGGCACGCGGACATTTACGCAGTGCTAAATCTGCGTCGC 8007
||||||||| | || |||||||||| || | | || | || |||||
Sbjct 222312 TTTGCCATCTACCTCGAACCGTGGCACGGTGATGTGTTCGAGTTTCTGGATCTGAAGAAA 222253
Query 8008 AACATGGGTTGCGAAGACAGCAAAGCGCGCGATCTATTCTTCGGATTGTGGGTGCCCGAT 8067
|||| || || || || ||||| | || | || |||||| | || |||
Sbjct 222252 AACACCGGCAAAGAGGAGGTGCGTGCACGCGACATGTTTTACGCCTTGTGGATTCCGGAT 222193
Query 8068 CTGTTTATGAGGCGCGTTCATTTCGACGCACAATGGTCGCTCATGTGCCC---CGATCGT 8124
||||| ||| ||| || | ||| | ||| || |||||||| |||| ||
Sbjct 222192 CTGTTCATGGAGCGGGTGGAGGCGAACGAAATGTGGAGTCTAATGTGCCCTCACGATTGT 222133
Query 8125 TGCCCTTTATTAAAAAACGTTTACGGTTCAAAATTTGAACAATTGTACAAACAATACGAA 8184
| ||| | | | | | ||| ||| || || | |||||| |||||
Sbjct 222132 CCCGGTTTGTCTGATAGC---TGGGGTGAAAAGTTCGAGGCACTGTACACTGGCTACGAG 222076
Query 8185 CACGACGGCGCGTACGTGCGGCAAGTGAAAGCGCGCGACCTGCACCGCGCCATTATCGAA 8244
| || || | | || || ||||| || | || || ||| || || |||
Sbjct 222075 AAAGAGGGTCGTTTTATTCGCCAGGTGAAGGCACAGGATTTGTGGTTCGCGATCATTGAA 222016
Query 8245 TGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGCAACGCCAAAAGC 8304
| || ||||| || | ||||| ||||||||||| || || |||||| |||||||
Sbjct 222015 TCGCAGGTGGAAACGGGCGTACCGTATATGCTGTACAAGGATGCATGCAACCGCAAAAGC 221956
Query 8305 AATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAAATTGTACAGTAC 8364
|| || ||| | ||||||||| || || ||||| |||| ||||| |||||
Sbjct 221955 AACCAGCAGAACATTGGCACCATTAAGTGTTCTAACTTGTGCACTGAGATTGTGGAGTAC 221896
Query 8365 AGCGCGCCCGACGAAGTGGCCGTTTGCAATCTAGCGTCGGTGTGTTTAAACGCGTTCGT- 8423
|| || ||| | || ||||||||||| || ||| | | ||| ||||||
Sbjct 221895 TCGTCGAAGGATGAAATTGCGGTTTGCAATCTGGCCTCGATCGCACTGAACATGTTCGTA 221836
Query 8424 TGATCGACGCTCAAACACTTACGACTTTGAACAATTGAAAAA---CGCCGTGCAAGTGAC 8480
||| || | | || ||||| || | | | |||| | |||| | ||| ||
Sbjct 221835 AAATC--CGAT--AGGACGTACGATTTCGTAAAGCTGAAGGATGTCGCCAAGATAGTAAC 221780
Query 8481 GGTACGCAATTTAGATCGCATCATTGATGTCAATTTTTATCCCTTGGAAGAAGCG-CGCG 8539
||||||| | | ||||| || | || | ||||| || || ||| |||
Sbjct 221779 ---ACGCAATCTGAACAAAATCATCGACATAAACTACTATCCGGTGCCGGAGGCGAAGCG 221723
Query 8540 TATCGAACATGCGCCACAGACCCGTTGGCGTGGGCGTGCAAGGTCTGGCCGACGCGTTTG 8599
| || |||||||||||||| ||| | || | || ||||| || ||||||| |||||
Sbjct 221722 T-TCCAACATGCGCCACAGGCCCATCGGTATCGGTGTGCAGGGCATGGCCGATGCGTT-- 221666
Query 8600 CCATGT---TGCGCCTCCCCTACGAAAGCCAAGAAGCGCGCATGCTCAACATAAAAATAG 8656
||| | ||||| || ||||||||| |||| || | | ||| || | |||||
Sbjct 221665 -CATTTTAATGCGCTATCCATACGAAAGCGAAGAGGCCCAAAAGCTGAATCAACAAATAT 221607
Query 8657 CGGAAACGGTGTATTACGGCGCATTAGAAGCCAGCTGTCAACT---TGCCCGAGAATTGG 8713
||||| | || || || ||| | ||||| ||||| || | ||| || || |
Sbjct 221606 TTGAAACCATCTACTATGGAGCACTGGAAGCAAGCTGCGAATTGGCTGCACGGGA---CG 221550
Query 8714 GCACGTACGAATCGTACGCGGGCAGCCCTGCCAGCCGCGGAATATTGCAATACGACATGT 8773
| | ||||| |||| | || | || | ||| || | | || ||||| ||||
Sbjct 221549 GTCCATACGAGACGTATGAAGGTTGTCCAGTGAGCAAGGGTGTCCTACAGTACGAAATGT 221490
Query 8774 GGAATGTCACGCCCACCTCTTTGTGGAATTGGAGCGATTTGAAACGCAAAATTGCTCAAT 8833
|||| || || | ||||||| |||| || ||||| || ||||| |
Sbjct 221489 GGAACAAAGAACCGACGGATCTGTGGAACTGGACAGAGTTGAAGGAGAAGATTGCAAAGC 221430
Query 8834 TCGGTTTGCGCAATTCGCTGTTGGTGGCTTACATGCCCACCGCCACGACTGCTCAAATAA 8893
|||| | || || ||||| || |||| ||||| || || |||| || ||||||
Sbjct 221429 ACGGTATTCGTAACTCGCTACTGCTGGCACCGATGCCGACAGCTTCGACGGCACAAATAT 221370
Query 8894 TGGGAAACAACGAATCCTTTGAGCCGTTCACCAACAACGTGTACGTGAGACGAGTGTTGG 8953
|||| ||||| || ||||| ||||||| ||| ||||| ||| |||| ||| |
Sbjct 221369 TGGGCAACAATGAGTCCTTCGAGCCGTACACGTCGAACGTTTACAACCGACGTGTGCTAT 221310
Query 8954 CCGGCGATTTTTTAATGCTGAATCGTCATTTGATGCGCGACTTGATCGAAGCGGGCGTTT 9013
| ||||| || || |||| | |||| || ||| || | | | ||| | |
Sbjct 221309 CGGGCGAGTTCCAGGTGGTGAACCATCATCTGCTGCAAGATCTAACAGCGATGGGTTTGT 221250
Query 9014 ACGA---CGACAAAATGCGCGATGCCATCGTGGAAGCCAACGGCAGCG-TTCAGAACATT 9069
|| |||| | | | | |||| || |||||| | || |||| ||||||
Sbjct 221249 GGGATCTTGACATGAAGAACAA---CATCTTGTCCAACAACGG-ATCGATTCAAAACATT 221194
Query 9070 GACGCGGTGCCTCAACACATTAAAGAGCTGTATAAAACCGTTTGGGAAATGAAG--CAAA 9127
|| | | || | | || || ||||| || || || ||||| || | |||
Sbjct 221193 GAATCAATACCAAAGGAAATCCGCGACCTGTACAAGACGGTATGGGAGATCTCGGTGAAA 221134
Query 9128 GCACGCTGATCGGCATGGCTGCGGATAGAGGCGCTTTTATTGATCAGAGTCAATCTTTTA 9187
|| | ||| ||||| || ||| | || || ||||| |||||| ||||| ||||
Sbjct 221133 ACATCC--ATCAAAATGGCGGCCGATCGGGGAGCGTTTATCGATCAGTCACAATCATTTA 221076
Query 9188 ACGTGTTCGTAGCCGCACC-AACTTACGC--TTTGATGTCCAGCATTCATTATTTAACTT 9244
|| | ||| |||| || |||| || ||| ||| || |||| | | |
Sbjct 221075 ACATACACGTGGCCGAGCCGAACTATGGCAAGCTGACGTC---GATCCATTTCTACGCGT 221019
Query 9245 GGAAAATGGGTTTAAAAACAGGCATGTACTATTTGCGCACAAAACCCGCCGCTGAACCTA 9304
|||| ||||| |||| || ||||||||||| ||||||| ||||| |||| | | |
Sbjct 221018 GGAAGATGGGACTAAAGACGGGCATGTACTACCTGCGCACCAAACCGGCCGTAAATGCCA 220959
Query 9305 TCAAATTTACAGT 9317
|| ||||||| ||
Sbjct 220958 TCCAATTTACGGT 220946
>seq672
Length=1102954
Score = 118 bits (130), Expect = 1e-21
Identities = 167/233 (72%), Gaps = 4/233 (2%)
Strand=Plus/Plus
Query 134483 CTTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC 134542
||| || || | ||||||| ||| || || || || |||||||| ||||||||||||||
Sbjct 391573 CTTACCACCACGAAGTCGCAGCACCAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTC 391632
Query 134543 GCCAACGGTGTGAGAG--TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCG 134600
| || | ||| | || || ||||| || || || || || | ||||||||||||
Sbjct 391633 --CGACAGAGTGCGGCCATCCTCCAGCTGCTTACCGGCGAAGATGAGACGCTGCTGATCT 391690
Query 134601 GGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGAT 134660
|| || || ||||| || || ||||| ||| || || || | ||||| || |
Sbjct 391691 GGGGGAATTCCTTCCTTATCCTGAATCTTTGCCTTCACATTTTCGATCGTGTCCGAAGGC 391750
Query 134661 TCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| || || || || ||||| || ||||| | ||||| |||||||| |||||
Sbjct 391751 TCGACCTCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCAT 391803
>seq575
Length=281738
Score = 95.1 bits (104), Expect = 1e-14
Identities = 154/220 (70%), Gaps = 4/220 (2%)
Strand=Plus/Minus
Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555
|| || | ||| || || || || || ||||| |||||||| ||||| || |||||
Sbjct 24163 AGGCGAAGCACCAGATGAAGGGTCGACTCCTTCTGAATGTTATAGTCAG--ACAGTGTGC 24106
Query 134556 GAG--TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTT 134613
| || || ||||| || || || || ||||||||||||||||| ||||| ||||| |
Sbjct 24105 GTCCATCCTCCAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCCGGCGGGATGCCCT 24046
Query 134614 CTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAG 134673
| || || || || || || || || | || || || | || || || || |
Sbjct 24045 CCTTATCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGG 23986
Query 134674 TAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|||| || ||||| || | ||||| ||||| || |||||
Sbjct 23985 TAATAGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 23946
>seq949
Length=1771395
Score = 93.3 bits (102), Expect = 4e-14
Identities = 150/213 (70%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTC 134563
|| || || || || |||||||| ||||| |||||||| | || || | | || ||
Sbjct 446688 ACCAGATGGAGAGTCGATTCCTTCTGAATATTGTAGTCCGACAGCGTACGGCCA-TCTTC 446746
Query 134564 GAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTG 134623
| ||| ||||| ||||| |||| |||||||||||| || || || || || || || ||
Sbjct 446747 CAACTGCTTGCCAGCAAAGATCAGACGCTGCTGATCTGGTGGGATTCCCTCCTTATCCTG 446806
Query 134624 AATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTT 134683
||| || || || || | || ||||| | || || || || || || || ||
Sbjct 446807 AATCTTGGCCTTAACATTCTCGATGGTATCGGATGGCTCAACCTCCAGGGTGATCGTCTT 446866
Query 134684 ACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716
|| |||| ||| || ||||| || ||||||||
Sbjct 446867 TCCAGTTAGAGTCTTGACGAAGATCTGCATTTT 446899
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505389606067840
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