Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq872 257 2e-63 seq672 118 1e-21 seq575 95.1 1e-14 seq949 93.3 4e-14 >seq872 Length=887634 Score = 257 bits (284), Expect = 2e-63 Identities = 1196/1873 (64%), Gaps = 58/1873 (3%) Strand=Plus/Minus Query 7474 GAGCGCGATTACGATTACCGTTATTTTGCCGTAAAAACTTTAAAAAACGG--CTACTTGT 7531 || ||||||| | ||| ||||| | | | ||||||||| | ||| |||||||| Sbjct 222789 GATCGCGATTTTGGGTACAACTATTTCGGCTTCAAAACTTTAGAG--CGGTCCTACTTGT 222732 Query 7532 TGAAAATCAACGGCGAATGCGCGGAACGAATTCAACACATGCTGTTGCGCGTGGCGGTGG 7591 |||| ||||| ||| | || || ||| || || ||| || ||||||| ||| | | Sbjct 222731 TGAAGATCAAGGGCAAGATCGTTGAGCGACCGCAGCATATGTTGATGCGCGTTGCGATCG 222672 Query 7592 GCATTCACGGCGAAGACATTGACGCCGCCTTGGAAACGTACCAAATGATGTCTTTGAAAC 7651 ||||||| || |||||||| || || || | || || ||| | || | || | Sbjct 222671 GCATTCATGGTGAAGACATCGATGCAGCAATCGAGACTTACAATCTGCTTTCGGAGCGCT 222612 Query 7652 AGTTTACGCACGCTTCGCCCACCATGTTTGCCGCGGGCAC-AAACGCGCCTCAATTGTCC 7710 | ||||| || || || || ||||||||||| |||| || |||| || || ||||| Sbjct 222611 ACTTTACCCATGCCTCACCGACCATGTTTGCGGCGGCTACGCAACG-TCCGCAGTTGTCG 222553 Query 7711 TCGTGTTTTTTGCTAACCATGCGCGAAGACAGCATCGACGGCATTTACAACACGCTGCGC 7770 || ||||| ||||| |||||| || |||||||| || || || ||| | |||||| Sbjct 222552 TCCTGTTTCTTGCTCACCATGTCGGACGACAGCATTGAAGGTATCTACGATACGCTGAAG 222493 Query 7771 GATTGCGCCAATATTTCCAAATACGGCGGCGGAATAGGTCTGAACGTAAACGACGTGCGC 7830 | || || ||||| |||| | |||||||| || |||||||| || | ||| Sbjct 222492 CAGTGTGCACTGATTTCAAAATCTGCTGGCGGAATTGGGCTGAACGTGCACTGTATTCGC 222433 Query 7831 GCCAACGGTAGCCGCATCGTGTCCACCAACGGAAAAGCCAGCGGTTTAGAGCCCATGTTG 7890 || || |||| |||| | ||| || |||| | | ||| || | ||| ||| || Sbjct 222432 GCGAAAGGTACGTACATCTCGGGCACGAATGGAATTTCAAACGGGTTGGTGCCAATGCTG 222373 Query 7891 CGCGTGTTCAATAACGCGGTGCGACATGTAGACCAGGGGGG---AAAGCGCAAAGGCGCC 7947 ||||||| ||| || ||| ||| | || || ||||| || |||||| || || Sbjct 222372 CGCGTGTACAACAATACGGCCCGATACGTGGATCAGGGTGGCAACAAGCGCCCGGGAGCT 222313 Query 7948 GCTGCCATCTATTTGGAGCCGTGGCACGCGGACATTTACGCAGTGCTAAATCTGCGTCGC 8007 ||||||||| | || |||||||||| || | | || | || ||||| Sbjct 222312 TTTGCCATCTACCTCGAACCGTGGCACGGTGATGTGTTCGAGTTTCTGGATCTGAAGAAA 222253 Query 8008 AACATGGGTTGCGAAGACAGCAAAGCGCGCGATCTATTCTTCGGATTGTGGGTGCCCGAT 8067 |||| || || || || ||||| | || | || |||||| | || ||| Sbjct 222252 AACACCGGCAAAGAGGAGGTGCGTGCACGCGACATGTTTTACGCCTTGTGGATTCCGGAT 222193 Query 8068 CTGTTTATGAGGCGCGTTCATTTCGACGCACAATGGTCGCTCATGTGCCC---CGATCGT 8124 ||||| ||| ||| || | ||| | ||| || |||||||| |||| || Sbjct 222192 CTGTTCATGGAGCGGGTGGAGGCGAACGAAATGTGGAGTCTAATGTGCCCTCACGATTGT 222133 Query 8125 TGCCCTTTATTAAAAAACGTTTACGGTTCAAAATTTGAACAATTGTACAAACAATACGAA 8184 | ||| | | | | | ||| ||| || || | |||||| ||||| Sbjct 222132 CCCGGTTTGTCTGATAGC---TGGGGTGAAAAGTTCGAGGCACTGTACACTGGCTACGAG 222076 Query 8185 CACGACGGCGCGTACGTGCGGCAAGTGAAAGCGCGCGACCTGCACCGCGCCATTATCGAA 8244 | || || | | || || ||||| || | || || ||| || || ||| Sbjct 222075 AAAGAGGGTCGTTTTATTCGCCAGGTGAAGGCACAGGATTTGTGGTTCGCGATCATTGAA 222016 Query 8245 TGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGCAACGCCAAAAGC 8304 | || ||||| || | ||||| ||||||||||| || || |||||| ||||||| Sbjct 222015 TCGCAGGTGGAAACGGGCGTACCGTATATGCTGTACAAGGATGCATGCAACCGCAAAAGC 221956 Query 8305 AATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAAATTGTACAGTAC 8364 || || ||| | ||||||||| || || ||||| |||| ||||| ||||| Sbjct 221955 AACCAGCAGAACATTGGCACCATTAAGTGTTCTAACTTGTGCACTGAGATTGTGGAGTAC 221896 Query 8365 AGCGCGCCCGACGAAGTGGCCGTTTGCAATCTAGCGTCGGTGTGTTTAAACGCGTTCGT- 8423 || || ||| | || ||||||||||| || ||| | | ||| |||||| Sbjct 221895 TCGTCGAAGGATGAAATTGCGGTTTGCAATCTGGCCTCGATCGCACTGAACATGTTCGTA 221836 Query 8424 TGATCGACGCTCAAACACTTACGACTTTGAACAATTGAAAAA---CGCCGTGCAAGTGAC 8480 ||| || | | || ||||| || | | | |||| | |||| | ||| || Sbjct 221835 AAATC--CGAT--AGGACGTACGATTTCGTAAAGCTGAAGGATGTCGCCAAGATAGTAAC 221780 Query 8481 GGTACGCAATTTAGATCGCATCATTGATGTCAATTTTTATCCCTTGGAAGAAGCG-CGCG 8539 ||||||| | | ||||| || | || | ||||| || || ||| ||| Sbjct 221779 ---ACGCAATCTGAACAAAATCATCGACATAAACTACTATCCGGTGCCGGAGGCGAAGCG 221723 Query 8540 TATCGAACATGCGCCACAGACCCGTTGGCGTGGGCGTGCAAGGTCTGGCCGACGCGTTTG 8599 | || |||||||||||||| ||| | || | || ||||| || ||||||| ||||| Sbjct 221722 T-TCCAACATGCGCCACAGGCCCATCGGTATCGGTGTGCAGGGCATGGCCGATGCGTT-- 221666 Query 8600 CCATGT---TGCGCCTCCCCTACGAAAGCCAAGAAGCGCGCATGCTCAACATAAAAATAG 8656 ||| | ||||| || ||||||||| |||| || | | ||| || | ||||| Sbjct 221665 -CATTTTAATGCGCTATCCATACGAAAGCGAAGAGGCCCAAAAGCTGAATCAACAAATAT 221607 Query 8657 CGGAAACGGTGTATTACGGCGCATTAGAAGCCAGCTGTCAACT---TGCCCGAGAATTGG 8713 ||||| | || || || ||| | ||||| ||||| || | ||| || || | Sbjct 221606 TTGAAACCATCTACTATGGAGCACTGGAAGCAAGCTGCGAATTGGCTGCACGGGA---CG 221550 Query 8714 GCACGTACGAATCGTACGCGGGCAGCCCTGCCAGCCGCGGAATATTGCAATACGACATGT 8773 | | ||||| |||| | || | || | ||| || | | || ||||| |||| Sbjct 221549 GTCCATACGAGACGTATGAAGGTTGTCCAGTGAGCAAGGGTGTCCTACAGTACGAAATGT 221490 Query 8774 GGAATGTCACGCCCACCTCTTTGTGGAATTGGAGCGATTTGAAACGCAAAATTGCTCAAT 8833 |||| || || | ||||||| |||| || ||||| || ||||| | Sbjct 221489 GGAACAAAGAACCGACGGATCTGTGGAACTGGACAGAGTTGAAGGAGAAGATTGCAAAGC 221430 Query 8834 TCGGTTTGCGCAATTCGCTGTTGGTGGCTTACATGCCCACCGCCACGACTGCTCAAATAA 8893 |||| | || || ||||| || |||| ||||| || || |||| || |||||| Sbjct 221429 ACGGTATTCGTAACTCGCTACTGCTGGCACCGATGCCGACAGCTTCGACGGCACAAATAT 221370 Query 8894 TGGGAAACAACGAATCCTTTGAGCCGTTCACCAACAACGTGTACGTGAGACGAGTGTTGG 8953 |||| ||||| || ||||| ||||||| ||| ||||| ||| |||| ||| | Sbjct 221369 TGGGCAACAATGAGTCCTTCGAGCCGTACACGTCGAACGTTTACAACCGACGTGTGCTAT 221310 Query 8954 CCGGCGATTTTTTAATGCTGAATCGTCATTTGATGCGCGACTTGATCGAAGCGGGCGTTT 9013 | ||||| || || |||| | |||| || ||| || | | | ||| | | Sbjct 221309 CGGGCGAGTTCCAGGTGGTGAACCATCATCTGCTGCAAGATCTAACAGCGATGGGTTTGT 221250 Query 9014 ACGA---CGACAAAATGCGCGATGCCATCGTGGAAGCCAACGGCAGCG-TTCAGAACATT 9069 || |||| | | | | |||| || |||||| | || |||| |||||| Sbjct 221249 GGGATCTTGACATGAAGAACAA---CATCTTGTCCAACAACGG-ATCGATTCAAAACATT 221194 Query 9070 GACGCGGTGCCTCAACACATTAAAGAGCTGTATAAAACCGTTTGGGAAATGAAG--CAAA 9127 || | | || | | || || ||||| || || || ||||| || | ||| Sbjct 221193 GAATCAATACCAAAGGAAATCCGCGACCTGTACAAGACGGTATGGGAGATCTCGGTGAAA 221134 Query 9128 GCACGCTGATCGGCATGGCTGCGGATAGAGGCGCTTTTATTGATCAGAGTCAATCTTTTA 9187 || | ||| ||||| || ||| | || || ||||| |||||| ||||| |||| Sbjct 221133 ACATCC--ATCAAAATGGCGGCCGATCGGGGAGCGTTTATCGATCAGTCACAATCATTTA 221076 Query 9188 ACGTGTTCGTAGCCGCACC-AACTTACGC--TTTGATGTCCAGCATTCATTATTTAACTT 9244 || | ||| |||| || |||| || ||| ||| || |||| | | | Sbjct 221075 ACATACACGTGGCCGAGCCGAACTATGGCAAGCTGACGTC---GATCCATTTCTACGCGT 221019 Query 9245 GGAAAATGGGTTTAAAAACAGGCATGTACTATTTGCGCACAAAACCCGCCGCTGAACCTA 9304 |||| ||||| |||| || ||||||||||| ||||||| ||||| |||| | | | Sbjct 221018 GGAAGATGGGACTAAAGACGGGCATGTACTACCTGCGCACCAAACCGGCCGTAAATGCCA 220959 Query 9305 TCAAATTTACAGT 9317 || ||||||| || Sbjct 220958 TCCAATTTACGGT 220946 >seq672 Length=1102954 Score = 118 bits (130), Expect = 1e-21 Identities = 167/233 (72%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 134483 CTTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC 134542 ||| || || | ||||||| ||| || || || || |||||||| |||||||||||||| Sbjct 391573 CTTACCACCACGAAGTCGCAGCACCAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTC 391632 Query 134543 GCCAACGGTGTGAGAG--TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCG 134600 | || | ||| | || || ||||| || || || || || | |||||||||||| Sbjct 391633 --CGACAGAGTGCGGCCATCCTCCAGCTGCTTACCGGCGAAGATGAGACGCTGCTGATCT 391690 Query 134601 GGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGAT 134660 || || || ||||| || || ||||| ||| || || || | ||||| || | Sbjct 391691 GGGGGAATTCCTTCCTTATCCTGAATCTTTGCCTTCACATTTTCGATCGTGTCCGAAGGC 391750 Query 134661 TCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || ||||| || ||||| | ||||| |||||||| ||||| Sbjct 391751 TCGACCTCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCAT 391803 >seq575 Length=281738 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| || || || || || ||||| |||||||| ||||| || ||||| Sbjct 24163 AGGCGAAGCACCAGATGAAGGGTCGACTCCTTCTGAATGTTATAGTCAG--ACAGTGTGC 24106 Query 134556 GAG--TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTT 134613 | || || ||||| || || || || ||||||||||||||||| ||||| ||||| | Sbjct 24105 GTCCATCCTCCAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCCGGCGGGATGCCCT 24046 Query 134614 CTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAG 134673 | || || || || || || || || | || || || | || || || || | Sbjct 24045 CCTTATCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGG 23986 Query 134674 TAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||| || ||||| || | ||||| ||||| || ||||| Sbjct 23985 TAATAGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 23946 >seq949 Length=1771395 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTC 134563 || || || || || |||||||| ||||| |||||||| | || || | | || || Sbjct 446688 ACCAGATGGAGAGTCGATTCCTTCTGAATATTGTAGTCCGACAGCGTACGGCCA-TCTTC 446746 Query 134564 GAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTG 134623 | ||| ||||| ||||| |||| |||||||||||| || || || || || || || || Sbjct 446747 CAACTGCTTGCCAGCAAAGATCAGACGCTGCTGATCTGGTGGGATTCCCTCCTTATCCTG 446806 Query 134624 AATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTT 134683 ||| || || || || | || ||||| | || || || || || || || || Sbjct 446807 AATCTTGGCCTTAACATTCTCGATGGTATCGGATGGCTCAACCTCCAGGGTGATCGTCTT 446866 Query 134684 ACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || |||| ||| || ||||| || |||||||| Sbjct 446867 TCCAGTTAGAGTCTTGACGAAGATCTGCATTTT 446899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505389606067840