Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq872 387 2e-102 seq628 91.5 2e-13 >seq872 Length=887634 Score = 387 bits (428), Expect = 2e-102 Identities = 1207/1851 (65%), Gaps = 26/1851 (1%) Strand=Plus/Plus Query 68395 GCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAA 68454 || ||||| || || || |||||||| || || || || || | |||| |||||||| Sbjct 220970 GCCGGTTTGGTGCGCAGGTAGTACATGCCCGTCTTTAGTCCCATCTTCCACGCGTAGAAA 221029 Query 68455 TGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTT 68514 || || || || ||| ||| | || ||||| | || || || | ||||| Sbjct 221030 TGGATCGACGTCAGCTTGCCATAGTTCGGCTCGGCCACGTGTATGTTAAATGATTGTGAC 221089 Query 68515 TGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAG-GA-ATTT 68572 |||||||| || ||||| | ||| ||||||||||| || | |||| | || || | Sbjct 221090 TGATCGATAAACGCTCCCCGATCGGCCGCCATTTTGATGGA--TGTTTTCACCGAGATCT 221147 Query 68573 CCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA--GGCTCG-TATTTTGAATGG 68629 |||| | ||||| | | | ||| || | ||| | | || | |||||||| | Sbjct 221148 CCCATACCGTCTTGTACAGGTCGCGGATTTCCTTTGGTATTGATTCAATGTTTTGAATCG 221207 Query 68630 ATCCACCATCGGATATAATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTA 68689 |||| | ||| | || | ||||| || ||| || |||||| || | |||| Sbjct 221208 ATCCGTTGTTGGACAAGATGTTGTTCTTCATGTCAAGATCCCACAAACCCATCGCTGTTA 221267 Query 68690 AAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGT 68749 | || || ||||| | || || | || || || || |||| ||| | || ||| Sbjct 221268 GATCTTGCAGCAGATGATGGTTCACCACCTGGAACTCGCCCGATAGCACACGTCGGTTGT 221327 Query 68750 AAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATG 68809 ||| || || || || || | || ||||| || |||| ||||| || || || | Sbjct 221328 AAACGTTCGACGTGTACGGCTCGAAGGACTCATTGTTGCCCAATATTTGTGCCGTCGAAG 221387 Query 68810 CAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTT 68869 | || ||||| ||||||| || || || | || ||| || || || || || | Sbjct 221388 CTGTCGGCATCGGTGCCAGCAGTAGCGAGTTACGAATACCGTGCTTTGCAATCTTCTCCT 221447 Query 68870 TTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAA 68929 | | | | |||| | ||| ||||| | ||| | ||||| | ||||| ||||| | Sbjct 221448 TCAACTCTGTCCAGTTCCACAGATCCGTCGGTTCTTTGTTCCACATTTCGTACTGTAGGA 221507 Query 68930 TTCCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTT 68989 || || || | | || | ||| || || || || || ||| || |||| | || Sbjct 221508 CACCCTTGCTCACTGGACAACCTTCATACGTCTCGTATGGACCGTCCCGTGCAGCCAATT 221567 Query 68990 CACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTT 69049 | || ||||| || | ||| || || || || ||||| || || | | ||| || | || Sbjct 221568 CGCAGCTTGCTTCCAGTGCTCCATAGTAGATGGTTTCAAATATTTGTTGATTCAGCTTTT 221627 Query 69050 GTGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAA 69109 | || ||| || ||| ||||||| | | | ||| || ||||| |||| ||||| | Sbjct 221628 GGGCCTCTTCGCTTTCGTATGGATAGCGCATTAAAATGAACGCATCGGCCATGCCCTGCA 221687 Query 69110 CCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAAT 69169 | || |||||||| || || || | | | || |||| | || || || | ||||| | Sbjct 221688 CACCGATACCGATGGGCCTGTGGCGCATGTTGGAACGCTTCGCCTCCGGCACCGGATAGT 221747 Query 69170 AATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTT 69229 | || || || || ||||| || ||||| || ||||| || | || ||||| || | Sbjct 221748 AGTTTATGTCGATGATTTTGTTCAGATTGCGTGTTACTATCTTGGCGACATCCTTCAGCT 221807 Query 69230 TGAGAAAATCAAATCGTCC-ATC---TATAACAAACATATTCAGTGCTACAGATGCTAGA 69285 | | ||||| | ||||| ||| | | || ||||| |||||||| | || || ||| Sbjct 221808 TTACGAAATCGTA-CGTCCTATCGGATTTTACGAACATGTTCAGTGCGATCGAGGCCAGA 221866 Query 69286 TTACAAACTGCTACCTCAT---TAGAATTTGCATATTGTATTATCTCTGTACATAGATTA 69342 || ||||| || | |||| | || | || | | ||||| || || | ||| Sbjct 221867 TTGCAAACCGCAATTTCATCCTTCGAC---GAGTACTCCACAATCTCAGTGCACAAGTTA 221923 Query 69343 CTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAA 69402 ||| || || || || | || ||||| || || || ||| || || |||||||| Sbjct 221924 GAACACTTAATGGTGCCAATGTTCTGCTGGTTGCTTTTGCGGTTGCATGCATCCTTGTAC 221983 Query 69403 AGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTA 69462 || ||| |||| || ||||| | ||| ||||| || || | ||| | || Sbjct 221984 AGCATATACGGTACGCCCGTTTCCACCTGCGATTCAATGATCGCGAACCACAAATCCTGT 222043 Query 69463 GCATTTATTACGGTCTTGTAACGCTTCTCTTTTTCATATT--GTGTATATAGCCGTTCGA 69520 || || | | | |||| |||||| || || ||||| | ||| |||| Sbjct 222044 GCCTTCACCTGGCGAATAAAACGACCCTCTTTCTCGTAGCCAGTGTACAGTGCC--TCGA 222101 Query 69521 ATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACA 69580 | | || ||||| |||| ||| || ||||| || | || ||||| | ||||| Sbjct 222102 ACTTTTCACCCCAGCTATCAGACAAACCGGGACAATCGTGAGGGCACATTAGACTCCACA 222161 Query 69581 CATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGAT 69640 || | ||| || || | ||| || ||||| |||||||| | || ||| | | Sbjct 222162 TTTCGTTCGCCTCCACCCGCTCCATGAACAGATCCGGAATCCACAAGGCGTAAAACATGT 222221 Query 69641 CTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATAT 69700 | | | | || || || || || ||||| || ||||| |||||||| | | || Sbjct 222222 CGCGTGCACGCACCTCCTCTTTGCCGGTGTTTTTCTTCAGATCCAGAAACTCGAACACAT 222281 Query 69701 CAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGAT 69760 || ||||| ||||| || || || || | ||||||| || || || || ||||||| Sbjct 222282 CACCGTGCCACGGTTCGAGGTAGATGGCAAAAGCTCCCGGGCGCTTGTTGCCACCCTGAT 222341 Query 69761 CTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTAC 69820 | | ||||| ||| || || || || || | |||||| || | | || || || | | Sbjct 222342 CCACGTATCGGGCCGTATTGTTGTACACGCGCAGCATTGGCACCAACCCGTTTGAAATTC 222401 Query 69821 CATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT-AGACCTATT 69879 |||| || || || || || | ||| | ||||||||| | | | | || || ||| Sbjct 222402 CATTCGTGCCCGAGATGTACGTACCTTTCGCGCGAATAC-AGTGCACGTTCAGCCCAATT 222460 Query 69880 CCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATG 69939 || || || ||| || || || ||||| | |||| || || || ||||| || ||| Sbjct 222461 CCGCCAGCAGATTTTGAAATCAGTGCACACTGCTTCAGCGTATCGTAGATACCTTCAATG 222520 Query 69940 CTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCA 69999 || || || |||| | || | |||||| |||| || || || || |||| Sbjct 222521 CTGTCGTCCGACATGGTGAGCAAGAAACAGGACGACAACTGCGGACGTTGCGTAGCCGCC 222580 Query 70000 TTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCA 70059 ||| | || || || || || || || | || |||||||||||||| || || Sbjct 222581 GCAAACATGGTCGGTGAGGCATGGGTAAAGTAGCGCTCCGAAAGCAGATTGTAAGTCTCG 222640 Query 70060 ATAGCTGATTCTATATC-CCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTG 70118 || |||| || || || ||| |||||| || ||||| || ||||||||||||||||| Sbjct 222641 ATTGCTGCATCGATGTCTTCAC-CATGAATGCCGATCGCAACGCGCATCAACATATGCTG 222699 Query 70119 AGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAA 70178 ||||| || || | || || || ||||||| ||| || || | |||||| || Sbjct 222700 CGGTCGCTCAACGATCTTGCCCTTGATCTTCAACAAGTAGGACCGCTCTAAAGTTTTGAA 222759 Query 70179 CCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATTTAG 70229 || ||||||||||| ||| || | || ||||| ||| | ||||| || Sbjct 222760 GCCGAAATAGTTGTACCCAAAATCGCGATCATAAATTATAGCCGAATTCAG 222810 >seq628 Length=1452984 Score = 91.5 bits (100), Expect = 2e-13 Identities = 154/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 39926 TTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAA 39985 ||||| ||||| || ||||| ||||||||||| | ||||| || | |||||||| Sbjct 708572 TTTTCCATCGCTATTTGAAAGCCGTAAAAACAGCGAGCTTCCGTTACCTGTACCTCCTGG 708631 Query 39986 CAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAAT 40045 | || | ||| ||| ||||| ||||| || ||||| |||||||| || || | | Sbjct 708632 CTGAAACGTTCGACCAGGTTTTCGTTCACGATGCCATCGGATGCGGCAAAGAAGGCAAGT 708691 Query 40046 ACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTT 40105 || || ||||| | ||| ||| |||| || |||||| || || || || Sbjct 708692 ACGTGCGAGATAAAGTGGCGTTCGCTCGGTTTCAACGAATCCCAGTCTTTCATGTCCTTG 708751 Query 40106 GATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCT 40148 || | ||| || ||||| | ||||| ||||| || || |||| Sbjct 708752 GACAGATCCACCTCTTCCACGGTCCAGAACGAAGCTTCCGCCT 708794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686896847786880