Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28]
1,392 sequences; 225,223,604 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq872 387 2e-102
seq628 91.5 2e-13
>seq872
Length=887634
Score = 387 bits (428), Expect = 2e-102
Identities = 1207/1851 (65%), Gaps = 26/1851 (1%)
Strand=Plus/Plus
Query 68395 GCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAA 68454
|| ||||| || || || |||||||| || || || || || | |||| ||||||||
Sbjct 220970 GCCGGTTTGGTGCGCAGGTAGTACATGCCCGTCTTTAGTCCCATCTTCCACGCGTAGAAA 221029
Query 68455 TGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTT 68514
|| || || || ||| ||| | || ||||| | || || || | |||||
Sbjct 221030 TGGATCGACGTCAGCTTGCCATAGTTCGGCTCGGCCACGTGTATGTTAAATGATTGTGAC 221089
Query 68515 TGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAG-GA-ATTT 68572
|||||||| || ||||| | ||| ||||||||||| || | |||| | || || |
Sbjct 221090 TGATCGATAAACGCTCCCCGATCGGCCGCCATTTTGATGGA--TGTTTTCACCGAGATCT 221147
Query 68573 CCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA--GGCTCG-TATTTTGAATGG 68629
|||| | ||||| | | | ||| || | ||| | | || | |||||||| |
Sbjct 221148 CCCATACCGTCTTGTACAGGTCGCGGATTTCCTTTGGTATTGATTCAATGTTTTGAATCG 221207
Query 68630 ATCCACCATCGGATATAATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTA 68689
|||| | ||| | || | ||||| || ||| || |||||| || | ||||
Sbjct 221208 ATCCGTTGTTGGACAAGATGTTGTTCTTCATGTCAAGATCCCACAAACCCATCGCTGTTA 221267
Query 68690 AAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGT 68749
| || || ||||| | || || | || || || || |||| ||| | || |||
Sbjct 221268 GATCTTGCAGCAGATGATGGTTCACCACCTGGAACTCGCCCGATAGCACACGTCGGTTGT 221327
Query 68750 AAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATG 68809
||| || || || || || | || ||||| || |||| ||||| || || || |
Sbjct 221328 AAACGTTCGACGTGTACGGCTCGAAGGACTCATTGTTGCCCAATATTTGTGCCGTCGAAG 221387
Query 68810 CAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTT 68869
| || ||||| ||||||| || || || | || ||| || || || || || |
Sbjct 221388 CTGTCGGCATCGGTGCCAGCAGTAGCGAGTTACGAATACCGTGCTTTGCAATCTTCTCCT 221447
Query 68870 TTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAA 68929
| | | | |||| | ||| ||||| | ||| | ||||| | ||||| ||||| |
Sbjct 221448 TCAACTCTGTCCAGTTCCACAGATCCGTCGGTTCTTTGTTCCACATTTCGTACTGTAGGA 221507
Query 68930 TTCCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTT 68989
|| || || | | || | ||| || || || || || ||| || |||| | ||
Sbjct 221508 CACCCTTGCTCACTGGACAACCTTCATACGTCTCGTATGGACCGTCCCGTGCAGCCAATT 221567
Query 68990 CACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTT 69049
| || ||||| || | ||| || || || || ||||| || || | | ||| || | ||
Sbjct 221568 CGCAGCTTGCTTCCAGTGCTCCATAGTAGATGGTTTCAAATATTTGTTGATTCAGCTTTT 221627
Query 69050 GTGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAA 69109
| || ||| || ||| ||||||| | | | ||| || ||||| |||| ||||| |
Sbjct 221628 GGGCCTCTTCGCTTTCGTATGGATAGCGCATTAAAATGAACGCATCGGCCATGCCCTGCA 221687
Query 69110 CCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAAT 69169
| || |||||||| || || || | | | || |||| | || || || | ||||| |
Sbjct 221688 CACCGATACCGATGGGCCTGTGGCGCATGTTGGAACGCTTCGCCTCCGGCACCGGATAGT 221747
Query 69170 AATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTT 69229
| || || || || ||||| || ||||| || ||||| || | || ||||| || |
Sbjct 221748 AGTTTATGTCGATGATTTTGTTCAGATTGCGTGTTACTATCTTGGCGACATCCTTCAGCT 221807
Query 69230 TGAGAAAATCAAATCGTCC-ATC---TATAACAAACATATTCAGTGCTACAGATGCTAGA 69285
| | ||||| | ||||| ||| | | || ||||| |||||||| | || || |||
Sbjct 221808 TTACGAAATCGTA-CGTCCTATCGGATTTTACGAACATGTTCAGTGCGATCGAGGCCAGA 221866
Query 69286 TTACAAACTGCTACCTCAT---TAGAATTTGCATATTGTATTATCTCTGTACATAGATTA 69342
|| ||||| || | |||| | || | || | | ||||| || || | |||
Sbjct 221867 TTGCAAACCGCAATTTCATCCTTCGAC---GAGTACTCCACAATCTCAGTGCACAAGTTA 221923
Query 69343 CTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAA 69402
||| || || || || | || ||||| || || || ||| || || ||||||||
Sbjct 221924 GAACACTTAATGGTGCCAATGTTCTGCTGGTTGCTTTTGCGGTTGCATGCATCCTTGTAC 221983
Query 69403 AGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTA 69462
|| ||| |||| || ||||| | ||| ||||| || || | ||| | ||
Sbjct 221984 AGCATATACGGTACGCCCGTTTCCACCTGCGATTCAATGATCGCGAACCACAAATCCTGT 222043
Query 69463 GCATTTATTACGGTCTTGTAACGCTTCTCTTTTTCATATT--GTGTATATAGCCGTTCGA 69520
|| || | | | |||| |||||| || || ||||| | ||| ||||
Sbjct 222044 GCCTTCACCTGGCGAATAAAACGACCCTCTTTCTCGTAGCCAGTGTACAGTGCC--TCGA 222101
Query 69521 ATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACA 69580
| | || ||||| |||| ||| || ||||| || | || ||||| | |||||
Sbjct 222102 ACTTTTCACCCCAGCTATCAGACAAACCGGGACAATCGTGAGGGCACATTAGACTCCACA 222161
Query 69581 CATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGAT 69640
|| | ||| || || | ||| || ||||| |||||||| | || ||| | |
Sbjct 222162 TTTCGTTCGCCTCCACCCGCTCCATGAACAGATCCGGAATCCACAAGGCGTAAAACATGT 222221
Query 69641 CTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATAT 69700
| | | | || || || || || ||||| || ||||| |||||||| | | ||
Sbjct 222222 CGCGTGCACGCACCTCCTCTTTGCCGGTGTTTTTCTTCAGATCCAGAAACTCGAACACAT 222281
Query 69701 CAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGAT 69760
|| ||||| ||||| || || || || | ||||||| || || || || |||||||
Sbjct 222282 CACCGTGCCACGGTTCGAGGTAGATGGCAAAAGCTCCCGGGCGCTTGTTGCCACCCTGAT 222341
Query 69761 CTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTAC 69820
| | ||||| ||| || || || || || | |||||| || | | || || || | |
Sbjct 222342 CCACGTATCGGGCCGTATTGTTGTACACGCGCAGCATTGGCACCAACCCGTTTGAAATTC 222401
Query 69821 CATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT-AGACCTATT 69879
|||| || || || || || | ||| | ||||||||| | | | | || || |||
Sbjct 222402 CATTCGTGCCCGAGATGTACGTACCTTTCGCGCGAATAC-AGTGCACGTTCAGCCCAATT 222460
Query 69880 CCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATG 69939
|| || || ||| || || || ||||| | |||| || || || ||||| || |||
Sbjct 222461 CCGCCAGCAGATTTTGAAATCAGTGCACACTGCTTCAGCGTATCGTAGATACCTTCAATG 222520
Query 69940 CTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCA 69999
|| || || |||| | || | |||||| |||| || || || || ||||
Sbjct 222521 CTGTCGTCCGACATGGTGAGCAAGAAACAGGACGACAACTGCGGACGTTGCGTAGCCGCC 222580
Query 70000 TTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCA 70059
||| | || || || || || || || | || |||||||||||||| || ||
Sbjct 222581 GCAAACATGGTCGGTGAGGCATGGGTAAAGTAGCGCTCCGAAAGCAGATTGTAAGTCTCG 222640
Query 70060 ATAGCTGATTCTATATC-CCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTG 70118
|| |||| || || || ||| |||||| || ||||| || |||||||||||||||||
Sbjct 222641 ATTGCTGCATCGATGTCTTCAC-CATGAATGCCGATCGCAACGCGCATCAACATATGCTG 222699
Query 70119 AGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAA 70178
||||| || || | || || || ||||||| ||| || || | |||||| ||
Sbjct 222700 CGGTCGCTCAACGATCTTGCCCTTGATCTTCAACAAGTAGGACCGCTCTAAAGTTTTGAA 222759
Query 70179 CCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATTTAG 70229
|| ||||||||||| ||| || | || ||||| ||| | ||||| ||
Sbjct 222760 GCCGAAATAGTTGTACCCAAAATCGCGATCATAAATTATAGCCGAATTCAG 222810
>seq628
Length=1452984
Score = 91.5 bits (100), Expect = 2e-13
Identities = 154/223 (69%), Gaps = 0/223 (0%)
Strand=Plus/Plus
Query 39926 TTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAA 39985
||||| ||||| || ||||| ||||||||||| | ||||| || | ||||||||
Sbjct 708572 TTTTCCATCGCTATTTGAAAGCCGTAAAAACAGCGAGCTTCCGTTACCTGTACCTCCTGG 708631
Query 39986 CAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAAT 40045
| || | ||| ||| ||||| ||||| || ||||| |||||||| || || | |
Sbjct 708632 CTGAAACGTTCGACCAGGTTTTCGTTCACGATGCCATCGGATGCGGCAAAGAAGGCAAGT 708691
Query 40046 ACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTT 40105
|| || ||||| | ||| ||| |||| || |||||| || || || ||
Sbjct 708692 ACGTGCGAGATAAAGTGGCGTTCGCTCGGTTTCAACGAATCCCAGTCTTTCATGTCCTTG 708751
Query 40106 GATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCT 40148
|| | ||| || ||||| | ||||| ||||| || || ||||
Sbjct 708752 GACAGATCCACCTCTTCCACGGTCCAGAACGAAGCTTCCGCCT 708794
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686896847786880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |