Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq641 113 4e-20 seq497 102 6e-17 seq628 84.2 2e-11 >seq641 Length=155807 Score = 113 bits (124), Expect = 4e-20 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 19612 GGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACTG 19671 || |||||||| |||||||||||||| || || ||||| | ||||| ||| | || | Sbjct 44525 GGTGTACATGATACTGTTGTCAATCAGCTATTGGCAAAAATTGACGGAGTTGAACAGTTA 44584 Query 19672 AATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGCGCCTTATTA 19731 ||||| ||| |||| || || |||||||| || || | |||||| || ||||| Sbjct 44585 AATAACATTCTAGTCATCGGAATGACTAACCGAAGAGATATGATAGACGAAGCTCTATTA 44644 Query 19732 CGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGTGGACGTGTG 19791 || || |||||||||||| || | || ||||| | | | || ||||| || || ||| Sbjct 44645 CGGCCTGGTCGGTTGGAAGTACAAATGGAAATAAGCCTTCCTAATGAAGAAGGGCGCGTG 44704 Query 19792 GAAATTTTAAACATACATAC 19811 | ||||| ||| ||||| Sbjct 44705 CAGATTTTGTCCATCCATAC 44724 >seq497 Length=402095 Score = 102 bits (112), Expect = 6e-17 Identities = 233/344 (68%), Gaps = 10/344 (3%) Strand=Plus/Plus Query 40865 AGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACAC 40924 |||||| | ||||| |||||||| ||||||| ||| || ||||| |||||||| | || Sbjct 123924 AGGTGACTTAGGTCCAGTTTATGGCTTTCAGTGGCGTCACTTTGGTGCAAAATACAAAAC 123983 Query 40925 TATGT-ACTCTGATTATACCAATAAAGGAATGGATCAATTA-CAGTGCGTTATAGATACG 40982 ||| || ||||| || | ||||| || || || ||| || ||| | | Sbjct 123984 -ATGCCACGACGATTACACAGGACAGGGAATCGACCAGTTGGCAGAA-GTGATACACAAA 124041 Query 40983 ATTAAATCCGATCC---CGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGAC 41039 || ||| | |||| |||| | ||| || || || |||| ||||| || | || Sbjct 124042 ATAAAAAACAATCCTTACGATCGTCGA---ATCATCATGAGCGCTTGGAATCCTTCCGAT 124098 Query 41040 GTACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGT 41099 | | ||||| || || || ||||| | || ||||||| ||| ||||||| Sbjct 124099 ATTCCCAACATGGCCTTACCGCCGTGTCACTGCTTGGCACAGTTTTTTGTTGGCAATGGA 124158 Query 41100 GAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAAC 41159 || |||| || || ||||||| |||| | ||| | ||| | || || ||||||||| Sbjct 124159 GAGTTGTCTTGCCAGATGTATCAGCGATCGGCTGATGTAGGATTGGGTGTTCCGTTTAAC 124218 Query 41160 ATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 || || || || || |||| || ||||||| || || ||||| Sbjct 124219 ATTGCTAGCTACTCTTTGCTGACCCATATGATCGCCCATGTTAC 124262 >seq628 Length=1452984 Score = 84.2 bits (92), Expect = 2e-11 Identities = 121/167 (72%), Gaps = 4/167 (2%) Strand=Plus/Minus Query 44120 TTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAG-GATCG-T 44177 ||||| || || | ||||||||||| | ||| ||||| || ||||| ||| | | | | Sbjct 708346 TTTGGCGAGCGTGTCGTCGCGTTTGCTGCTGTCGAAGGTATCTTCTT--CAGCGGTAGCT 708289 Query 44178 TTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATG 44237 |||| ||||| || ||| | ||||| || || ||||||| || | || || || || | Sbjct 708288 TTGCCGCCATTTTCTGGCTGAAGAAGCGTGGACTGATGCCGGGACTTACCTTCTCGAACG 708229 Query 44238 AGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284 || | || ||||||||||| |||| || || ||||| ||| || Sbjct 708228 AGCTGATTTCGCGTGATGAAGGACTACACTGTGACTTTGCCTGCCTG 708182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397449257158960