Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28]
1,392 sequences; 225,223,604 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq641 113 4e-20
seq497 102 6e-17
seq628 84.2 2e-11
>seq641
Length=155807
Score = 113 bits (124), Expect = 4e-20
Identities = 145/200 (73%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 19612 GGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACTG 19671
|| |||||||| |||||||||||||| || || ||||| | ||||| ||| | || |
Sbjct 44525 GGTGTACATGATACTGTTGTCAATCAGCTATTGGCAAAAATTGACGGAGTTGAACAGTTA 44584
Query 19672 AATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGCGCCTTATTA 19731
||||| ||| |||| || || |||||||| || || | |||||| || |||||
Sbjct 44585 AATAACATTCTAGTCATCGGAATGACTAACCGAAGAGATATGATAGACGAAGCTCTATTA 44644
Query 19732 CGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGTGGACGTGTG 19791
|| || |||||||||||| || | || ||||| | | | || ||||| || || |||
Sbjct 44645 CGGCCTGGTCGGTTGGAAGTACAAATGGAAATAAGCCTTCCTAATGAAGAAGGGCGCGTG 44704
Query 19792 GAAATTTTAAACATACATAC 19811
| ||||| ||| |||||
Sbjct 44705 CAGATTTTGTCCATCCATAC 44724
>seq497
Length=402095
Score = 102 bits (112), Expect = 6e-17
Identities = 233/344 (68%), Gaps = 10/344 (3%)
Strand=Plus/Plus
Query 40865 AGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACAC 40924
|||||| | ||||| |||||||| ||||||| ||| || ||||| |||||||| | ||
Sbjct 123924 AGGTGACTTAGGTCCAGTTTATGGCTTTCAGTGGCGTCACTTTGGTGCAAAATACAAAAC 123983
Query 40925 TATGT-ACTCTGATTATACCAATAAAGGAATGGATCAATTA-CAGTGCGTTATAGATACG 40982
||| || ||||| || | ||||| || || || ||| || ||| | |
Sbjct 123984 -ATGCCACGACGATTACACAGGACAGGGAATCGACCAGTTGGCAGAA-GTGATACACAAA 124041
Query 40983 ATTAAATCCGATCC---CGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGAC 41039
|| ||| | |||| |||| | ||| || || || |||| ||||| || | ||
Sbjct 124042 ATAAAAAACAATCCTTACGATCGTCGA---ATCATCATGAGCGCTTGGAATCCTTCCGAT 124098
Query 41040 GTACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGT 41099
| | ||||| || || || ||||| | || ||||||| ||| |||||||
Sbjct 124099 ATTCCCAACATGGCCTTACCGCCGTGTCACTGCTTGGCACAGTTTTTTGTTGGCAATGGA 124158
Query 41100 GAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAAC 41159
|| |||| || || ||||||| |||| | ||| | ||| | || || |||||||||
Sbjct 124159 GAGTTGTCTTGCCAGATGTATCAGCGATCGGCTGATGTAGGATTGGGTGTTCCGTTTAAC 124218
Query 41160 ATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203
|| || || || || |||| || ||||||| || || |||||
Sbjct 124219 ATTGCTAGCTACTCTTTGCTGACCCATATGATCGCCCATGTTAC 124262
>seq628
Length=1452984
Score = 84.2 bits (92), Expect = 2e-11
Identities = 121/167 (72%), Gaps = 4/167 (2%)
Strand=Plus/Minus
Query 44120 TTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAG-GATCG-T 44177
||||| || || | ||||||||||| | ||| ||||| || ||||| ||| | | | |
Sbjct 708346 TTTGGCGAGCGTGTCGTCGCGTTTGCTGCTGTCGAAGGTATCTTCTT--CAGCGGTAGCT 708289
Query 44178 TTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATG 44237
|||| ||||| || ||| | ||||| || || ||||||| || | || || || || |
Sbjct 708288 TTGCCGCCATTTTCTGGCTGAAGAAGCGTGGACTGATGCCGGGACTTACCTTCTCGAACG 708229
Query 44238 AGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284
|| | || ||||||||||| |||| || || ||||| ||| ||
Sbjct 708228 AGCTGATTTCGCGTGATGAAGGACTACACTGTGACTTTGCCTGCCTG 708182
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397449257158960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |