Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq872 264 1e-65 seq575 98.7 8e-16 seq672 95.1 1e-14 >seq872 Length=887634 Score = 264 bits (292), Expect = 1e-65 Identities = 1059/1645 (64%), Gaps = 43/1645 (3%) Strand=Plus/Plus Query 130406 TTTTCGACGGTGAATTGAATGGCATTGGTGGCCGGCTTGGTGCGCAAATAATACATGCCT 130465 || || || || ||||| |||||||| |||||| |||||||||| || |||||||| Sbjct 220940 TTGTCCACCGTAAATTGGATGGCATTTACGGCCGGTTTGGTGCGCAGGTAGTACATGCCC 220999 Query 130466 GTTTTGAGTCCAATTTTGTGTCCATAATTGTGGATGCTGCACATTGTTTGG--TAATTGG 130523 || || ||||| || || | || ||||| || | ||| || || | Sbjct 221000 GTCTTTAGTCCCATCTTCCACGCGTAGAAATGGATCGACGTCA--GCTTGCCATAGTTCG 221057 Query 130524 GTTGCGCCACGAATATGTTGAGCGATTGCGATTGATCAATAAAAGCGCCCCTGTCTGCAG 130583 | | |||||| |||||| | ||||| || ||||| ||||| || |||| || || | Sbjct 221058 GCTCGGCCACGTGTATGTTAAATGATTGTGACTGATCGATAAACGCTCCCCGATCGGCCG 221117 Query 130584 CCATGTCGA-GCATGGTTTTATTTTTCATCTCCCAAGCGGTCTTGTATAGATCCCTAATG 130642 |||| | || | ||| ||| | |||||||| | |||||||| || || | || Sbjct 221118 CCATTTTGATGGATGTTTTCACCGAG-ATCTCCCATACCGTCTTGTACAGGTCGCGGATT 221176 Query 130643 TGTTTGGGTATGCGCGCAATCGATTGAA-CGCTACCGTTGTTGGCTATAATTTCGTTGCG 130701 | || ||||| |||| ||||| || | |||||||||| | || | ||| Sbjct 221177 TCCTTTGGTATTGATTCAATGTTTTGAATCGAT-CCGTTGTTGGACAAGATGTTGTTCTT 221235 Query 130702 CATACTTTTATCGTACAATCCAA--GCTGTACAAGATCTTTTACCAAATGATTATTAATG 130759 ||| ||| |||| || | ||||| ||||||| | || ||||| || | Sbjct 221236 CATGTCAAGATCCCACAAACCCATCGCTGTT--AGATCTTGCAGCAGATGATGGTTCACC 221293 Query 130760 ATTTGAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAAG 130819 | || || || || | || || |||| ||||| ||| |||| |||| || ||| Sbjct 221294 ACCTGGAACTCGCCCGATAGCACACGTCGGTTGTAAACGTTCGACGTGTACGGCTCGAAG 221353 Query 130820 GATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAGA 130879 || || |||||||| ||||||||||| || | || || ||||| ||||| | ||| Sbjct 221354 GACTCATTGTTGCCCAATATTTGTGCCGTCGAAGCTGTCGGCATCGGTGCCAGCAGTAGC 221413 Query 130880 GAATTACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGAGAG 130939 || ||||||| ||||||| | | || || |||||| || ||| | ||| ||| Sbjct 221414 GAGTTACGAATACCGTGCTTTGCAATCTTCTCCTTCAACTCTGTCCAGTTCCACAGATCC 221473 Query 130940 GTAGGTTTGACATTGTTCCACATATCAAATTGTAGTATGCCTTTACTGGCGGGACTGGAT 130999 || |||| | ||||||||||| || | ||||| | || || || | |||| | Sbjct 221474 GTCGGTT---CTTTGTTCCACATTTCGTACTGTAGGACACCCTTGCTCACTGGACAACCT 221530 Query 131000 TCGAACGATTCGTAGATTCCTTCGACACGAGCCAGGTCGTTGCTAGCTTCCAAAGCTCCG 131059 || ||| ||||| || || ||||| ||| ||| ||||||| ||||| Sbjct 221531 TCATACGTCTCGTATGGACCGTCCCGTGCAGCCAATTCGCAGCTTGCTTCCAGTGCTCCA 221590 Query 131060 TAATAAATGGTTTCGGCAATTTGTTTATTTAATTGTTTCGCTTGGTTGCTCTCGTAAGGA 131119 || || |||||||| ||||||| ||| | | || || | | ||| ||||| ||| Sbjct 221591 TAGTAGATGGTTTCAAATATTTGTTGATTCAGCTTTTGGGCCTCTTCGCTTTCGTATGGA 221650 Query 131120 AATTTCATTAAAATAAAAGCGTCTGCGAGACCCTGTATCCCAACGCCCACCGGTCTATGT 131179 | ||||||||| || || || || | ||||| | || | || | || || || Sbjct 221651 TAGCGCATTAAAATGAACGCATCGGCCATGCCCTGCACACCGATACCGATGGGCCTGTGG 221710 Query 131180 TTTAAATTACATTTACGC-GAACATTCGG--TGGGATAAAGGTTAATGTCAATTATTTTG 131236 | || | |||| | | ||| ||||| ||| ||||| || |||||| Sbjct 221711 CGCATGTTGGA---ACGCTTCGCCTCCGGCACCGGATAGTAGTTTATGTCGATGATTTTG 221767 Query 131237 TTTAAATTGCGCACTACAATTTGTGTGACGCTTTTCAATTTGTCGAAATCAAACGTGCCA 131296 || | |||||| ||| || | | ||| |||| || ||||||| |||| | Sbjct 221768 TTCAGATTGCGTGTTACTATCTTGGCGACATCCTTCAGCTTTACGAAATCGTACGTCC-- 221825 Query 131297 GTTTCGAGGTTTACAAATTGATTTACACATATTGACGCCAGATTACAAACTGCCGTTTCG 131356 | ||| ||||| || || | || || |||||||| ||||| || |||| Sbjct 221826 -TATCGGATTTTACGAACATGTTCAGTGCGATCGAGGCCAGATTGCAAACCGCAATTTCA 221884 Query 131357 TCATAATCG--CAATACTGAACAATTTCGGCGCACAAATTACTGCTCTTTATGGTGCCCA 131414 || | ||| | |||| ||||| || | |||||| ||| | ||| |||||||| | Sbjct 221885 TCCT--TCGACGAGTACTCCACAATCTCAGTGCACAAGTTAGAACACTTAATGGTGCCAA 221942 Query 131415 AATTTTGTTGATTGCTTTTAGCATTCACATG-GTCCTTGTACATCATGTAGGGCGTGCCC 131473 || || || |||||||| || | |||| |||||||||| ||| || || |||| Sbjct 221943 TGTTCTGCTGGTTGCTTTT-GCGGTTGCATGCATCCTTGTACAGCATATACGGTACGCCC 222001 Query 131474 GTTTCGACTTGAGTTTCAATAATGTATCGAA--AGAGTTTTCGAGCAGACAATTGATATT 131531 ||||| || || | |||||| | | |||| | | | | || || || Sbjct 222002 GTTTCCACCTGCGATTCAATGA--TCGCGAACCACAAATCCTGTGCCTTCACCTGGCGAA 222059 Query 131532 TGTATTGGCCGCGTTTTTCGTAATTTTCGTACAACGTTTCAAAGTTTTGGCCAAACGAAC 131591 | | | || ||| ||||| ||||| | || || |||| || | | | Sbjct 222060 TAAAACGACCCTCTTTCTCGTAGCCAGTGTACAGTGCCTCGAACTTTT---CACCCCAGC 222116 Query 131592 TGTC---CAAATTGGGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAA 131648 | || |||| |||||| ||| || |||||||| ||||| ||||| || | Sbjct 222117 TATCAGACAAACCGGGACAATCGTGAGGGCACATTAGACTCCACATTTCGTTCGCCTCCA 222176 Query 131649 CTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCT 131708 | |||| ||| |||| |||||| | ||| || ||||| |||| || | || || Sbjct 222177 CCCGCTCCATGAACAGATCCGGAATCCACAAGGCGTAAAACATGTCGCGTGCACGCACCT 222236 Query 131709 CTTCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTT 131768 | ||| | || | |||| |||| || | ||| || || | || | ||||| |||| Sbjct 222237 CCTCTTTGCCGGTGTTTTTCTTCAGATCCAGAAACTCGAACACATCACCGTGCCACGGTT 222296 Query 131769 CCAAATACACTGCCATTGCGCCTTTGCGC---TTACCGCCTTGATTAACATGACGAACCA 131825 | | || | || | || || |||| || || || |||| || | || || Sbjct 222297 CGAGGTAGATGGCAAAAGCTCCCGGGCGCTTGTTGCCACCCTGATCCACGTATCGGGCCG 222356 Query 131826 TGTTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAA 131885 | |||||||| ||||||| ||| ||| |||| ||||| | ||||||| |||| | | Sbjct 222357 TATTGTTGTACACGCGCAGCATTGGCACCAACCCGTTTGAAATTCCATTCGTGCCCGAGA 222416 Query 131886 TGTAGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTTAG 131945 |||| | || || || | || ||| ||||| || ||||| || || | |||| | Sbjct 222417 TGTACGTACCTTTCGCGCGAATACAGTGCACGTTCAGCCCAATTCCGCCAGCAGATTTTG 222476 Query 131946 AGATTAGTGCGCATTTGGTTAGAGTGTTATAGATACCTTCCACGCTGTCCGCGGCAATGT 132005 | || ||||| || | | || || | ||||||||||| | |||||| | | ||| Sbjct 222477 AAATCAGTGCACACTGCTTCAGCGTATCGTAGATACCTTCAATGCTGTCGTCCGACATGG 222536 Query 132006 CGACTAAAAAGCAAGAGGACAACTG 132030 || || || || || |||||||| Sbjct 222537 TGAGCAAGAAACAGGACGACAACTG 222561 >seq575 Length=281738 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || ||||||| || | |||| ||| | || || || || ||||| || ||||| | Sbjct 24172 CCACCGCGCAGGCGAAGCACCAGATGAAGGGTCGACTCCTTCTGAATGTTATAGTCAGAC 24113 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| | || || ||||| ||||||||| | || | |||||| ||||||||||| Sbjct 24112 AGTGTGCGTCCATCCTCCAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCCGGCGGG 24053 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| ||||| |||||| |||| | || | || || | || || || Sbjct 24052 ATGCCCTCCTTATCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACC 23993 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || |||| || ||||| || ||||| || ||||| ||||| Sbjct 23992 TCAAGGGTAATAGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 23946 >seq672 Length=1102954 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| |||| ||| | ||||| || || ||||| |||||||| || |||| | Sbjct 391589 CGCAGCACCAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCCGACAGAGTGCGGCCA 391648 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 || || ||||| ||||||||| | ||||||||||| ||||| || || | || || ||| Sbjct 391649 TCCTCCAGCTGCTTACCGGCGAAGATGAGACGCTGCTGATCTGGGGGAATTCCTTCCTTA 391708 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||||| |||| |||| | ||||| | | || || || || || || Sbjct 391709 TCCTGAATCTTTGCCTTCACATTTTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTGATG 391768 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||||| || || |||||||| || || ||||| Sbjct 391769 GTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCAT 391803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424927190987904