Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq872 174 2e-38 seq1171 89.7 6e-13 seq628 82.4 1e-10 >seq872 Length=887634 Score = 174 bits (192), Expect = 2e-38 Identities = 892/1398 (64%), Gaps = 42/1398 (3%) Strand=Plus/Plus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||| | ||| | ||||| || || ||| | ||||| || ||||| |||||||| || || Sbjct 221326 GTAAACGTTCGACGTGTACGGCTCGAAGGACTCATTGTTGCCCAATATTTGTGCCGTCGA 221385 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTG--ATGCGT 110824 ||||| ||||| ||||||| || || |||||||| ||| | || ||| || Sbjct 221386 AGCTGTCGGCATCGGTGCCAGCAGTAGCGAGTTACGAATACCGTGCT--TTGCAATCTTC 221443 Query 110825 TCCTTGAGAACATCCCAGT--CGTAGTTGAGCTTGGTTTCACCTTCCCACATGTCAAACT 110882 ||||| | | ||||| | || | | | | ||| | |||||| || ||| Sbjct 221444 TCCTTCAACTCTGTCCAGTTCCACAGATCCG--TCGGTTCTTTGTTCCACATTTCGTACT 221501 Query 110883 GAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAG 110942 | || || || | | | | ||| |||| ||| | || || || | ||| | | ||| Sbjct 221502 GTAGGACACCCTTGCTCACTGGACAACCTTCATACGTCTCGTATGGACCGTCCCGTGCAG 221561 Query 110943 CCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCA 111002 ||||||| ||||| || ||||| | | | | || ||||||||||| || | ||||| Sbjct 221562 CCAATTCGCAGCTTGCTTCCAGTGCTCCATAGTAGATGGTTTCAAATATTTGTTGATTCA 221621 Query 111003 TCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGAC 111062 || | ||| || || || ||| ||||| ||||| || |||| || | | Sbjct 221622 GCTTTTGGGCCTCTTCGCTTTCGTATGGATAGCGCATTAAAATGAACGCATCGGCCATGC 221681 Query 111063 CTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACT--TTCGCG-CAGTCTCAA 111119 | || ||||| | ||| || || ||||| ||||| || || ||||| | | | | Sbjct 221682 CCTGCACACCGATACCGATGGGCCTGTGGCGCATGTTGGAACGCTTCGCCTCCGGC---A 221738 Query 111120 CGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTT 111179 | ||||| | ||| |||| |||| | ||| ||||| || || ||||| | || | Sbjct 221739 CCGGATAGTAGTTTATGTCGATGATTTTGTTCAGATTGCGTGTTACTATCTTGGCGACAT 221798 Query 111180 CATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGA 111239 | | || ||| | |||| | || | | || || || || | || |||| Sbjct 221799 CCTTCAGCTTTACGAAATCGTACGTCCTA---TCGGATTTTACGAACATGTTCAGTGCGA 221855 Query 111240 TTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTAC 111299 | || |||| ||||||||| || | |||||||| | |||||| | ||| || || | Sbjct 221856 TCGAGGCCAGATTGCAAACCGCAATTTCATCCTTCGACGAGTACTCCACAATCTCAGTGC 221915 Query 111300 ATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCAT 111359 | ||||| |||| |||||| || || | |||| ||||| || || |||||| |||| Sbjct 221916 ACAAGTTAGAACACTTAATGGTGCCAATGTTCTGCTGGTTGCTTTTGCGGTTGCATGCAT 221975 Query 111360 CCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA 111419 ||||||| ||||| || || ||||| ||| ||| |||| | || || ||| | Sbjct 221976 CCTTGTACAGCATATACGGTACGCCCGTTTCCACCTGCGATTCAATGATCGCGAACCACA 222035 Query 111420 CATCGGCGGCTGGTACAATGGCG-TTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGG 111478 ||| || || ||||| | || ||||| |||||| ||||| || Sbjct 222036 AATCCTGTGCCTTCAC-CTGGCGAATAAAACGACCCTCTTTCTCGTAGCCAGTGTACAGT 222094 Query 111479 GCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAG 111537 || || |||| |||||| | || || || | ||| || | || || || | || Sbjct 222095 GCCTCGAACTTTTCACCC-CAGCTATCAGACAAACCGGGACAATCGTGAGGGCACATTAG 222153 Query 111538 AGACCATTGACCACCTT--CCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGAT 111595 | ||| | | || |||| ||||||| |||||| || || |||||||||| || Sbjct 222154 ACTCCA--CATTTCGTTCGCCTCCACCCGCTCCATGAACAGATCCGGAATCCACAAGGCG 222211 Query 111596 GAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGT-AACTCAAGGA 111653 |||| | || | | || || |||| || | || ||| || | | || || | Sbjct 222212 TAAAACATGTCGCGTGCA-CGCACCTCCTCTTTGCCGGTGTT-TTTCTTCAGATCCAGAA 222269 Query 111654 ACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC- 111712 |||| | | ||| ||||||| || || || |||| || | || |||| | ||| Sbjct 222270 ACTCGAACACATCACCGTGCCACGGTTCGAGGTAGATGGCAAAAGCTCCC---GGGCGCT 222326 Query 111713 -----CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAA 111767 ||| | |||| || || || || || ||| | ||||| |||||||| | | Sbjct 222327 TGTTGCCACCCTGATCCACGTATCGGGCCGTATTGTTGTACACGCGCAGCATTGGCACCA 222386 Query 111768 TACCATCTGATTGACCATTTGT-CCCCCGA-ATACGAGATTTATTGGCTCTCACATCATG 111825 || | ||| ||||| || ||| || |||| | || || | | | || Sbjct 222387 ACCCGTTTGAAATTCCATTCGTGCCCGAGATGTACGTACCT--TTCGCGCGAATACAGTG 222444 Query 111826 GATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCC 111885 | || || |||||| || ||||| | ||||| || | ||||||| | | || || | Sbjct 222445 CACGTTCAGCCCAATTCCGCCAGCAGATTTTGAAATCAGTGCACACTGCTTCAGCGTATC 222504 Query 111886 ATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGG 111945 |||||||| | || ||| ||| ||| || | ||| || |||| |||||| Sbjct 222505 GTAGATACCTTCAATGCTGTCGTCCGACATGGTGAGCAAGAAACAGGACGACAACTGCGG 222564 Query 111946 TCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACAT 112005 | | | ||| | || || | ||| |||| || || | || | | || | Sbjct 222565 ACGTTGCGTAGCCGCCGCAAACATGGTCGGTGAGGCATGGGTAAAGTAGCGCTCCGAAAG 222624 Query 112006 CTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCG 112065 | | ||| ||||| | | | ||| |||||||| || || |||||||| || || || Sbjct 222625 CAGATTGTAAGTCTCGATTGCTGCATCGATGTCTTCACCATGAATGCCGATCGCAACGCG 222684 Query 112066 CATGAACATGTACTGTGG 112083 ||| ||||| | ||| || Sbjct 222685 CATCAACATATGCTGCGG 222702 >seq1171 Length=2124680 Score = 89.7 bits (98), Expect = 6e-13 Identities = 341/522 (65%), Gaps = 20/522 (4%) Strand=Plus/Plus Query 11437 CACTTGGATCTTGCGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCAC 11496 ||| | ||||| ||||| || || ||||| || | || || | || ||||| || || Sbjct 1105537 CACGTAGATCTGACGATCGAAGCGTCCCGGTCGTAACAGTGCCTTGTCGAGGATGTCAAC 1105596 Query 11497 GCGATTAGT---GGCC-GCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCT 11552 || || || |||| ||| || ||||| || || | ||| ||| |||||||||| Sbjct 1105597 ACGGTTCGTCGCGGCCAGCACTA-CCACATTGGTTGT---AGTGTTAAATCCATCCATCT 1105652 Query 11553 CGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCA----CCA 11608 | | | |||||||| || | |||| ||| || | | | | | | ||| Sbjct 1105653 CCACCAACAGTTGATTAAGGGTATTTTCTTGCTCCGAATGTCC-GCCGAAGCTTTTGCCA 1105711 Query 11609 GCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTT 11668 ||| || || | || || ||||| || || || ||||| | ||| || ||| ||| Sbjct 1105712 CCAC-GCTTTCGT--CCAACGGCATCGATTTCGTCGATGAATAGAATGCACGGTGCGTTT 1105768 Query 11669 TCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCC 11728 | ||| || ||| |||| | ||||| || | | || |||||||||||||| ||| Sbjct 1105769 TTGCGTGCCATTGCAAACATGTCGCGTACACGCGACGGTCCTACACCAACAAACATTTCC 1105828 Query 11729 ACAAAGTTTGCGGCAGAGCACTG-GATGAATGGGACATTTGATTCACCCGCGATGGCTCG 11787 | ||| | | | || ||| | ||||| || || |||| |||||| || | || Sbjct 1105829 AAAAACTCCGAACCGGA-CACGGTAATGAAGGGTACGTTTGCTTCACCGGCAGTTGCCTT 1105887 Query 11788 GGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTT 11847 ||||| | || || |||||||||||| |||| | | ||||||| ||| || || Sbjct 1105888 TGCGAGCAACGTTTTGCCCGTACCTGGCGGGCCCGTTAACATGGCGCCTTTGGGAATTTT 1105947 Query 11848 GGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTCTTCAAGTTC 11907 || || | | ||| | ||| | |||||||||| ||||| ||| || ||| Sbjct 1105948 TGCTCCGAGATCGATGTATTGTTGGGGGTTTTTGAGAAAATTCACAAACTCCATAATTTC 1106007 Query 11908 -ATCTTTGGCCGCGTCAATCCCCTCAACATCACTGAAGCGGG 11948 ||| |||||| | || || | ||||| ||| | |||| Sbjct 1106008 GATC-TTGGCCTCCTCGCATCCTGCTACATCCCTGGAACGGG 1106048 >seq628 Length=1452984 Score = 82.4 bits (90), Expect = 1e-10 Identities = 147/212 (69%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 |||||| || ||| || || ||||| || ||||| || || || |||||| || || Sbjct 708188 GGCAAAGTCACAGTGTAGTCCTTCATCACGCGAAATCAGCTCGTTCGAGAAGGTAAGTCC 708247 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 122777 ||||| || || |||||||||| ||| |||| ||| || ||| ||||||||| Sbjct 708248 CGGCATCAGTCCACGCTTCTTCAGCCAGAAAATGGCGGCAAAGCTACCGCTGAAGAAGAT 708307 Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACT--TTGCATCA 122835 ||| || ||| |||||||| | | || ||| | | || | || |||| | | Sbjct 708308 ACCTTCGACAGCAGCAAACGCGACGACACGCTCGCCAA---AGTTTGCCTTCTTGCTTGA 708364 Query 122836 -AACCATTTCATTGCCCATTTCGCCTTCTTCT 122866 | ||| |||| |||||| | |||||||||| Sbjct 708365 GATCCAGTTCAGTGCCCAATCGGCCTTCTTCT 708396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628021072243200