Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28]
1,392 sequences; 225,223,604 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq872 174 2e-38
seq1171 89.7 6e-13
seq628 82.4 1e-10
>seq872
Length=887634
Score = 174 bits (192), Expect = 2e-38
Identities = 892/1398 (64%), Gaps = 42/1398 (3%)
Strand=Plus/Plus
Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766
||| | ||| | ||||| || || ||| | ||||| || ||||| |||||||| || ||
Sbjct 221326 GTAAACGTTCGACGTGTACGGCTCGAAGGACTCATTGTTGCCCAATATTTGTGCCGTCGA 221385
Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTG--ATGCGT 110824
||||| ||||| ||||||| || || |||||||| ||| | || ||| ||
Sbjct 221386 AGCTGTCGGCATCGGTGCCAGCAGTAGCGAGTTACGAATACCGTGCT--TTGCAATCTTC 221443
Query 110825 TCCTTGAGAACATCCCAGT--CGTAGTTGAGCTTGGTTTCACCTTCCCACATGTCAAACT 110882
||||| | | ||||| | || | | | | ||| | |||||| || |||
Sbjct 221444 TCCTTCAACTCTGTCCAGTTCCACAGATCCG--TCGGTTCTTTGTTCCACATTTCGTACT 221501
Query 110883 GAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAG 110942
| || || || | | | | ||| |||| ||| | || || || | ||| | | |||
Sbjct 221502 GTAGGACACCCTTGCTCACTGGACAACCTTCATACGTCTCGTATGGACCGTCCCGTGCAG 221561
Query 110943 CCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCA 111002
||||||| ||||| || ||||| | | | | || ||||||||||| || | |||||
Sbjct 221562 CCAATTCGCAGCTTGCTTCCAGTGCTCCATAGTAGATGGTTTCAAATATTTGTTGATTCA 221621
Query 111003 TCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGAC 111062
|| | ||| || || || ||| ||||| ||||| || |||| || | |
Sbjct 221622 GCTTTTGGGCCTCTTCGCTTTCGTATGGATAGCGCATTAAAATGAACGCATCGGCCATGC 221681
Query 111063 CTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACT--TTCGCG-CAGTCTCAA 111119
| || ||||| | ||| || || ||||| ||||| || || ||||| | | | |
Sbjct 221682 CCTGCACACCGATACCGATGGGCCTGTGGCGCATGTTGGAACGCTTCGCCTCCGGC---A 221738
Query 111120 CGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTT 111179
| ||||| | ||| |||| |||| | ||| ||||| || || ||||| | || |
Sbjct 221739 CCGGATAGTAGTTTATGTCGATGATTTTGTTCAGATTGCGTGTTACTATCTTGGCGACAT 221798
Query 111180 CATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGA 111239
| | || ||| | |||| | || | | || || || || | || ||||
Sbjct 221799 CCTTCAGCTTTACGAAATCGTACGTCCTA---TCGGATTTTACGAACATGTTCAGTGCGA 221855
Query 111240 TTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTAC 111299
| || |||| ||||||||| || | |||||||| | |||||| | ||| || || |
Sbjct 221856 TCGAGGCCAGATTGCAAACCGCAATTTCATCCTTCGACGAGTACTCCACAATCTCAGTGC 221915
Query 111300 ATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCAT 111359
| ||||| |||| |||||| || || | |||| ||||| || || |||||| ||||
Sbjct 221916 ACAAGTTAGAACACTTAATGGTGCCAATGTTCTGCTGGTTGCTTTTGCGGTTGCATGCAT 221975
Query 111360 CCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA 111419
||||||| ||||| || || ||||| ||| ||| |||| | || || ||| |
Sbjct 221976 CCTTGTACAGCATATACGGTACGCCCGTTTCCACCTGCGATTCAATGATCGCGAACCACA 222035
Query 111420 CATCGGCGGCTGGTACAATGGCG-TTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGG 111478
||| || || ||||| | || ||||| |||||| ||||| ||
Sbjct 222036 AATCCTGTGCCTTCAC-CTGGCGAATAAAACGACCCTCTTTCTCGTAGCCAGTGTACAGT 222094
Query 111479 GCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAG 111537
|| || |||| |||||| | || || || | ||| || | || || || | ||
Sbjct 222095 GCCTCGAACTTTTCACCC-CAGCTATCAGACAAACCGGGACAATCGTGAGGGCACATTAG 222153
Query 111538 AGACCATTGACCACCTT--CCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGAT 111595
| ||| | | || |||| ||||||| |||||| || || |||||||||| ||
Sbjct 222154 ACTCCA--CATTTCGTTCGCCTCCACCCGCTCCATGAACAGATCCGGAATCCACAAGGCG 222211
Query 111596 GAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGT-AACTCAAGGA 111653
|||| | || | | || || |||| || | || ||| || | | || || |
Sbjct 222212 TAAAACATGTCGCGTGCA-CGCACCTCCTCTTTGCCGGTGTT-TTTCTTCAGATCCAGAA 222269
Query 111654 ACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC- 111712
|||| | | ||| ||||||| || || || |||| || | || |||| | |||
Sbjct 222270 ACTCGAACACATCACCGTGCCACGGTTCGAGGTAGATGGCAAAAGCTCCC---GGGCGCT 222326
Query 111713 -----CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAA 111767
||| | |||| || || || || || ||| | ||||| |||||||| | |
Sbjct 222327 TGTTGCCACCCTGATCCACGTATCGGGCCGTATTGTTGTACACGCGCAGCATTGGCACCA 222386
Query 111768 TACCATCTGATTGACCATTTGT-CCCCCGA-ATACGAGATTTATTGGCTCTCACATCATG 111825
|| | ||| ||||| || ||| || |||| | || || | | | ||
Sbjct 222387 ACCCGTTTGAAATTCCATTCGTGCCCGAGATGTACGTACCT--TTCGCGCGAATACAGTG 222444
Query 111826 GATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCC 111885
| || || |||||| || ||||| | ||||| || | ||||||| | | || || |
Sbjct 222445 CACGTTCAGCCCAATTCCGCCAGCAGATTTTGAAATCAGTGCACACTGCTTCAGCGTATC 222504
Query 111886 ATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGG 111945
|||||||| | || ||| ||| ||| || | ||| || |||| ||||||
Sbjct 222505 GTAGATACCTTCAATGCTGTCGTCCGACATGGTGAGCAAGAAACAGGACGACAACTGCGG 222564
Query 111946 TCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACAT 112005
| | | ||| | || || | ||| |||| || || | || | | || |
Sbjct 222565 ACGTTGCGTAGCCGCCGCAAACATGGTCGGTGAGGCATGGGTAAAGTAGCGCTCCGAAAG 222624
Query 112006 CTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCG 112065
| | ||| ||||| | | | ||| |||||||| || || |||||||| || || ||
Sbjct 222625 CAGATTGTAAGTCTCGATTGCTGCATCGATGTCTTCACCATGAATGCCGATCGCAACGCG 222684
Query 112066 CATGAACATGTACTGTGG 112083
||| ||||| | ||| ||
Sbjct 222685 CATCAACATATGCTGCGG 222702
>seq1171
Length=2124680
Score = 89.7 bits (98), Expect = 6e-13
Identities = 341/522 (65%), Gaps = 20/522 (4%)
Strand=Plus/Plus
Query 11437 CACTTGGATCTTGCGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCAC 11496
||| | ||||| ||||| || || ||||| || | || || | || ||||| || ||
Sbjct 1105537 CACGTAGATCTGACGATCGAAGCGTCCCGGTCGTAACAGTGCCTTGTCGAGGATGTCAAC 1105596
Query 11497 GCGATTAGT---GGCC-GCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCT 11552
|| || || |||| ||| || ||||| || || | ||| ||| ||||||||||
Sbjct 1105597 ACGGTTCGTCGCGGCCAGCACTA-CCACATTGGTTGT---AGTGTTAAATCCATCCATCT 1105652
Query 11553 CGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCA----CCA 11608
| | | |||||||| || | |||| ||| || | | | | | | |||
Sbjct 1105653 CCACCAACAGTTGATTAAGGGTATTTTCTTGCTCCGAATGTCC-GCCGAAGCTTTTGCCA 1105711
Query 11609 GCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTT 11668
||| || || | || || ||||| || || || ||||| | ||| || ||| |||
Sbjct 1105712 CCAC-GCTTTCGT--CCAACGGCATCGATTTCGTCGATGAATAGAATGCACGGTGCGTTT 1105768
Query 11669 TCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCC 11728
| ||| || ||| |||| | ||||| || | | || |||||||||||||| |||
Sbjct 1105769 TTGCGTGCCATTGCAAACATGTCGCGTACACGCGACGGTCCTACACCAACAAACATTTCC 1105828
Query 11729 ACAAAGTTTGCGGCAGAGCACTG-GATGAATGGGACATTTGATTCACCCGCGATGGCTCG 11787
| ||| | | | || ||| | ||||| || || |||| |||||| || | ||
Sbjct 1105829 AAAAACTCCGAACCGGA-CACGGTAATGAAGGGTACGTTTGCTTCACCGGCAGTTGCCTT 1105887
Query 11788 GGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTT 11847
||||| | || || |||||||||||| |||| | | ||||||| ||| || ||
Sbjct 1105888 TGCGAGCAACGTTTTGCCCGTACCTGGCGGGCCCGTTAACATGGCGCCTTTGGGAATTTT 1105947
Query 11848 GGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTCTTCAAGTTC 11907
|| || | | ||| | ||| | |||||||||| ||||| ||| || |||
Sbjct 1105948 TGCTCCGAGATCGATGTATTGTTGGGGGTTTTTGAGAAAATTCACAAACTCCATAATTTC 1106007
Query 11908 -ATCTTTGGCCGCGTCAATCCCCTCAACATCACTGAAGCGGG 11948
||| |||||| | || || | ||||| ||| | ||||
Sbjct 1106008 GATC-TTGGCCTCCTCGCATCCTGCTACATCCCTGGAACGGG 1106048
>seq628
Length=1452984
Score = 82.4 bits (90), Expect = 1e-10
Identities = 147/212 (69%), Gaps = 6/212 (3%)
Strand=Plus/Plus
Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717
|||||| || ||| || || ||||| || ||||| || || || |||||| || ||
Sbjct 708188 GGCAAAGTCACAGTGTAGTCCTTCATCACGCGAAATCAGCTCGTTCGAGAAGGTAAGTCC 708247
Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 122777
||||| || || |||||||||| ||| |||| ||| || ||| |||||||||
Sbjct 708248 CGGCATCAGTCCACGCTTCTTCAGCCAGAAAATGGCGGCAAAGCTACCGCTGAAGAAGAT 708307
Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACT--TTGCATCA 122835
||| || ||| |||||||| | | || ||| | | || | || |||| | |
Sbjct 708308 ACCTTCGACAGCAGCAAACGCGACGACACGCTCGCCAA---AGTTTGCCTTCTTGCTTGA 708364
Query 122836 -AACCATTTCATTGCCCATTTCGCCTTCTTCT 122866
| ||| |||| |||||| | ||||||||||
Sbjct 708365 GATCCAGTTCAGTGCCCAATCGGCCTTCTTCT 708396
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628021072243200
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