Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq872 154 2e-32 seq574 87.8 2e-12 >seq872 Length=887634 Score = 154 bits (170), Expect = 2e-32 Identities = 673/1045 (64%), Gaps = 35/1045 (3%) Strand=Plus/Plus Query 117837 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 117896 || ||||||||||| |||||||| || ||| |||||| || || | ||| || || | | Sbjct 220982 CGCAGGTAGTACATGCCCGTCTTTAGTCCCATCTTCCACGCGTAGAAATGGATCGACGTC 221041 Query 117897 AACTTGGAGAGGGTTGGACTTT-CCATGAAGAGGTTCATACTTTGGGATTGATCGATGAA 117955 | |||| | ||| | || ||| | | ||| | ||| || |||||||| || Sbjct 221042 AGCTTGCC-ATAGTTCGGCTCGGCCACGTGTATGTTAAATGATTGTGACTGATCGATAAA 221100 Query 117956 GCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTCCT 118015 ||||||||| |||||||| | || |||| | ||| ||||| || ||| | Sbjct 221101 CGCTCCCCGATCGGCCGCCATTTTGATGGATGTTTTCACCGAGATCTCCCATACCGTCTT 221160 Query 118016 GTAGAGGTTCTTAATATCATCTGGGAT--ATCCACGATATTTTGGATGGATCCACCCGCC 118073 ||| |||| || || | ||| || || || || ||||| || ||||| Sbjct 221161 GTACAGGTCGCGGATTTCCTTTGGTATTGATTCA--ATGTTTTGAATCGATCCGTTGT-- 221216 Query 118074 TTGACCA--TGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCA 118131 | ||| | || | |||||| || ||| | ||| ||| | | ||||| | || Sbjct 221217 TGGACAAGATGTTGTTCTTCATGTCAAGATCCCACAAACCCATCGCTGTTAGATCTTGCA 221276 Query 118132 CGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGG 118191 ||||| | || || || ||||| |||| || |||| || | || | Sbjct 221277 GCAGATGATGGTTCACCACCTGGAACTCGCCCGATAGCACACGTCGGTTGTAAACGTTCG 221336 Query 118192 TCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCA 118251 |||||| ||||| ||| |||||||||| ||||| ||||| || || || ||||| |||| Sbjct 221337 ACGTGTACGGCTCGAAGGACTCATTGTTGCCCAATATTTGTGCCGTCGAAGCTGTCGGCA 221396 Query 118252 TGGGTGCCATGAGAAGGCTGTTACGGAGACCCT--TTTCCCTAATGCGTTCCTTGAGAGC 118309 | ||||||| || || |||||| | ||| | ||| | ||| ||||| | | Sbjct 221397 TCGGTGCCAGCAGTAGCGAGTTACGAATACCGTGCTTTGC--AATCTTCTCCTTCAACTC 221454 Query 118310 GTCCCAGT--CGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCT 118367 ||||| | || | | | | || | |||||| || |||| |||| ||| Sbjct 221455 TGTCCAGTTCCACAGATCCG--TCGGTTCTTTGTTCCACATTTCGTACTGTAGGACACCC 221512 Query 118368 TGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAG 118427 | | | |||| | || ||| | ||||| ||||| || || | ||||||||| || Sbjct 221513 TTGCTCACTGGACAACCTTCATACGTCTCGTATGGACCGTCCCGTGCAGCCAATTCGCAG 221572 Query 118428 CTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTT--GG 118485 || || || || ||| | | || || |||||||| || | ||||| || || || Sbjct 221573 CTTGCTTCCAGTGCTCCATAGTAGATGGTTTCAAATATTTGTTGATTCA--GCTTTTGGG 221630 Query 118486 CCTCGTCGGAATCAAACGCGAGTCGGCAC-AAAATAAATACATCCGCGAGACCTTGGACA 118544 |||| ||| || | | || ||| ||||| || |||| || | || || ||| Sbjct 221631 CCTCTTCGCTTTCGTATG-GATAGCGCATTAAAATGAACGCATCGGCCATGCCCTGCACA 221689 Query 118545 CCGAGGCCAATTGGGCGATGTCTCATATTAGA---CTTCCGAGCGGTCTCCACGGGATAA 118601 |||| || || || | || | ||| || || |||| || | ||| ||||| Sbjct 221690 CCGATACCGATGGGCCTGTGGCGCATGTTGGAACGCTTC---GCCTCCGGCACCGGATAG 221746 Query 118602 AAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGC 118661 | || | ||||| | | || ||||| || || | ||| | || || | ||| Sbjct 221747 TAGTTTATGTCGATGATTTTGTTCAGATTGCGTGTTACTATCTTGGCGACATCCTTCAGC 221806 Query 118662 TTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCC 118721 ||| || |||| | | | | || || || || | || ||||| || ||| Sbjct 221807 TTTACGAAATCGTACGTCCTA---TCGGATTTTACGAACATGTTCAGTGCGATCGAGGCC 221863 Query 118722 AGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTT 118781 ||||| || || | | |||||||| | |||||| | ||| || ||||||||||| Sbjct 221864 AGATTGCAAACCGCAATTTCATCCTTCGACGAGTACTCCACAATCTCAGTGCACAAGTTA 221923 Query 118782 GAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTG-TGTTACACGCATCCTTGTA 118840 |||| |||||||||||| | ||||| || ||| |||| ||| || ||||||||||| Sbjct 221924 GAACACTTAATGGTGCCAATGTTCTGCTG-GTTGCTTTTGCGGTTGCATGCATCCTTGTA 221982 Query 118841 AAGCATGTATGGCGTCCCCGTCTCC 118865 ||||| || || ||||| ||| Sbjct 221983 CAGCATATACGGTACGCCCGTTTCC 222007 >seq574 Length=269012 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/214 (70%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 179038 GTGAAGATGTACCTCGTTTGAGACGC-ATCTTTGCCACCCATGAGACGCGTCCCAAATTG 179096 |||||||| ||||| | || ||| ||| || || ||| | | ||||| ||||| || Sbjct 37960 GTGAAGATATACCTGGGGCTAG-CGCTATCCTTTCCGCCCGTCAAGCGCGTACCAAACTG 38018 Query 179097 ACCACATGGCTCAAGGAGATTGATATTGTTTGAACCCATGTAGTCATTGGCCAACTTGAC 179156 ||| | || | || |||||||| || || || | ||||| | ||||| || || Sbjct 38019 ACCGCCAGGATAGAGCAGATTGATGTTATTGCTTCCGACGTAGTTCTGTGCCAAATTTAC 38078 Query 179157 AATCGTATCCGCG---AGGGAGACTTCACCGTGATGGTAAGCCGACTTGTCCGCCACATA 179213 ||||| || | || || ||||| ||||||||||| || || ||||| || | Sbjct 38079 GATCGT---CGAGCAAAGCGATTGCTCACCATGATGGTAAGCGGATTTCTCCGCGACCGA 38135 Query 179214 TGCCGCCAACTGCGCCACCTTCATCTCATCCTTG 179247 | ||||||||||||||||||| |||| |||| Sbjct 38136 ACCTGCCAACTGCGCCACCTTCACCTCACGCTTG 38169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618424439227520