Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28]
1,392 sequences; 225,223,604 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq872 154 2e-32
seq574 87.8 2e-12
>seq872
Length=887634
Score = 154 bits (170), Expect = 2e-32
Identities = 673/1045 (64%), Gaps = 35/1045 (3%)
Strand=Plus/Plus
Query 117837 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 117896
|| ||||||||||| |||||||| || ||| |||||| || || | ||| || || | |
Sbjct 220982 CGCAGGTAGTACATGCCCGTCTTTAGTCCCATCTTCCACGCGTAGAAATGGATCGACGTC 221041
Query 117897 AACTTGGAGAGGGTTGGACTTT-CCATGAAGAGGTTCATACTTTGGGATTGATCGATGAA 117955
| |||| | ||| | || ||| | | ||| | ||| || |||||||| ||
Sbjct 221042 AGCTTGCC-ATAGTTCGGCTCGGCCACGTGTATGTTAAATGATTGTGACTGATCGATAAA 221100
Query 117956 GCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTCCT 118015
||||||||| |||||||| | || |||| | ||| ||||| || ||| |
Sbjct 221101 CGCTCCCCGATCGGCCGCCATTTTGATGGATGTTTTCACCGAGATCTCCCATACCGTCTT 221160
Query 118016 GTAGAGGTTCTTAATATCATCTGGGAT--ATCCACGATATTTTGGATGGATCCACCCGCC 118073
||| |||| || || | ||| || || || || ||||| || |||||
Sbjct 221161 GTACAGGTCGCGGATTTCCTTTGGTATTGATTCA--ATGTTTTGAATCGATCCGTTGT-- 221216
Query 118074 TTGACCA--TGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCA 118131
| ||| | || | |||||| || ||| | ||| ||| | | ||||| | ||
Sbjct 221217 TGGACAAGATGTTGTTCTTCATGTCAAGATCCCACAAACCCATCGCTGTTAGATCTTGCA 221276
Query 118132 CGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGG 118191
||||| | || || || ||||| |||| || |||| || | || |
Sbjct 221277 GCAGATGATGGTTCACCACCTGGAACTCGCCCGATAGCACACGTCGGTTGTAAACGTTCG 221336
Query 118192 TCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCA 118251
|||||| ||||| ||| |||||||||| ||||| ||||| || || || ||||| ||||
Sbjct 221337 ACGTGTACGGCTCGAAGGACTCATTGTTGCCCAATATTTGTGCCGTCGAAGCTGTCGGCA 221396
Query 118252 TGGGTGCCATGAGAAGGCTGTTACGGAGACCCT--TTTCCCTAATGCGTTCCTTGAGAGC 118309
| ||||||| || || |||||| | ||| | ||| | ||| ||||| | |
Sbjct 221397 TCGGTGCCAGCAGTAGCGAGTTACGAATACCGTGCTTTGC--AATCTTCTCCTTCAACTC 221454
Query 118310 GTCCCAGT--CGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCT 118367
||||| | || | | | | || | |||||| || |||| |||| |||
Sbjct 221455 TGTCCAGTTCCACAGATCCG--TCGGTTCTTTGTTCCACATTTCGTACTGTAGGACACCC 221512
Query 118368 TGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAG 118427
| | | |||| | || ||| | ||||| ||||| || || | ||||||||| ||
Sbjct 221513 TTGCTCACTGGACAACCTTCATACGTCTCGTATGGACCGTCCCGTGCAGCCAATTCGCAG 221572
Query 118428 CTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTT--GG 118485
|| || || || ||| | | || || |||||||| || | ||||| || || ||
Sbjct 221573 CTTGCTTCCAGTGCTCCATAGTAGATGGTTTCAAATATTTGTTGATTCA--GCTTTTGGG 221630
Query 118486 CCTCGTCGGAATCAAACGCGAGTCGGCAC-AAAATAAATACATCCGCGAGACCTTGGACA 118544
|||| ||| || | | || ||| ||||| || |||| || | || || |||
Sbjct 221631 CCTCTTCGCTTTCGTATG-GATAGCGCATTAAAATGAACGCATCGGCCATGCCCTGCACA 221689
Query 118545 CCGAGGCCAATTGGGCGATGTCTCATATTAGA---CTTCCGAGCGGTCTCCACGGGATAA 118601
|||| || || || | || | ||| || || |||| || | ||| |||||
Sbjct 221690 CCGATACCGATGGGCCTGTGGCGCATGTTGGAACGCTTC---GCCTCCGGCACCGGATAG 221746
Query 118602 AAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGC 118661
| || | ||||| | | || ||||| || || | ||| | || || | |||
Sbjct 221747 TAGTTTATGTCGATGATTTTGTTCAGATTGCGTGTTACTATCTTGGCGACATCCTTCAGC 221806
Query 118662 TTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCC 118721
||| || |||| | | | | || || || || | || ||||| || |||
Sbjct 221807 TTTACGAAATCGTACGTCCTA---TCGGATTTTACGAACATGTTCAGTGCGATCGAGGCC 221863
Query 118722 AGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTT 118781
||||| || || | | |||||||| | |||||| | ||| || |||||||||||
Sbjct 221864 AGATTGCAAACCGCAATTTCATCCTTCGACGAGTACTCCACAATCTCAGTGCACAAGTTA 221923
Query 118782 GAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTG-TGTTACACGCATCCTTGTA 118840
|||| |||||||||||| | ||||| || ||| |||| ||| || |||||||||||
Sbjct 221924 GAACACTTAATGGTGCCAATGTTCTGCTG-GTTGCTTTTGCGGTTGCATGCATCCTTGTA 221982
Query 118841 AAGCATGTATGGCGTCCCCGTCTCC 118865
||||| || || ||||| |||
Sbjct 221983 CAGCATATACGGTACGCCCGTTTCC 222007
>seq574
Length=269012
Score = 87.8 bits (96), Expect = 2e-12
Identities = 150/214 (70%), Gaps = 8/214 (4%)
Strand=Plus/Plus
Query 179038 GTGAAGATGTACCTCGTTTGAGACGC-ATCTTTGCCACCCATGAGACGCGTCCCAAATTG 179096
|||||||| ||||| | || ||| ||| || || ||| | | ||||| ||||| ||
Sbjct 37960 GTGAAGATATACCTGGGGCTAG-CGCTATCCTTTCCGCCCGTCAAGCGCGTACCAAACTG 38018
Query 179097 ACCACATGGCTCAAGGAGATTGATATTGTTTGAACCCATGTAGTCATTGGCCAACTTGAC 179156
||| | || | || |||||||| || || || | ||||| | ||||| || ||
Sbjct 38019 ACCGCCAGGATAGAGCAGATTGATGTTATTGCTTCCGACGTAGTTCTGTGCCAAATTTAC 38078
Query 179157 AATCGTATCCGCG---AGGGAGACTTCACCGTGATGGTAAGCCGACTTGTCCGCCACATA 179213
||||| || | || || ||||| ||||||||||| || || ||||| || |
Sbjct 38079 GATCGT---CGAGCAAAGCGATTGCTCACCATGATGGTAAGCGGATTTCTCCGCGACCGA 38135
Query 179214 TGCCGCCAACTGCGCCACCTTCATCTCATCCTTG 179247
| ||||||||||||||||||| |||| ||||
Sbjct 38136 ACCTGCCAACTGCGCCACCTTCACCTCACGCTTG 38169
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618424439227520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |