Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1171 120 4e-22 seq628 98.7 1e-15 seq574 87.8 2e-12 >seq1171 Length=2124680 Score = 120 bits (132), Expect = 4e-22 Identities = 281/416 (68%), Gaps = 10/416 (2%) Strand=Plus/Plus Query 9517 GATCTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATT 9576 ||||| |||||| ||||| || || || | || || | || ||||| ||||| || || Sbjct 1105543 GATCTGACGATCGAAGCGTCCCGGTCGTAACAGTGCCTTGTCGAGGATGTCAACACGGTT 1105602 Query 9577 CGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAG 9636 ||||||||| | || || | | ||| | | | ||| ||||||||||| ||| || Sbjct 1105603 CGTCGCGGCCAGCACTACCACATTGGTTGTAGTGTTAAATCCATCCATCTCCACCAACAG 1105662 Query 9637 TTGGTTAATAGTTTGTTCCCGTTCATCATT--CGCTG--GCATACCACCAGCACTGCGTT 9692 ||| |||| || | ||| | || || ||| | || | ||| ||| || || Sbjct 1105663 TTGATTAAGGGTATTTTCTTGCTCCGAATGTCCGCCGAAGCTTTTG-CCACCAC-GCTTT 1105720 Query 9693 GCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGA 9752 | || |||||||| || || || ||||| | ||||| ||| |||| ||| || | Sbjct 1105721 CGT--CCAACGGCATCGATTTCGTCGATGAATAGAATGCACGGTGCGTTTTTGCGTGCCA 1105778 Query 9753 CTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG 9812 | |||| | || ||||||||| | || |||||||||||||| |||| ||| | | Sbjct 1105779 TTGCAAACATGTCGCGTACACGCGACGGTCCTACACCAACAAACATTTCCAAAAACTCCG 1105838 Query 9813 CGGCGGA-ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGA 9871 |||| || | |||||||| || || | |||||| ||| | || ||||| | Sbjct 1105839 AACCGGACACGGT-AATGAAGGGTACGTTTGCTTCACCGGCAGTTGCCTTTGCGAGCAAC 1105897 Query 9872 GTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 9927 || || |||||||||||| |||| | | ||| ||| ||||| || || || Sbjct 1105898 GTTTTGCCCGTACCTGGCGGGCCCGTTAACATGGCGCCTTTGGGAATTTTTGCTCC 1105953 >seq628 Length=1452984 Score = 98.7 bits (108), Expect = 1e-15 Identities = 117/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 ||||| ||||| || |||| ||||| ||| || |||||||||||| ||| ||| Sbjct 708347 CTTTGGCGAGCGTGTCGTCGCGTTTGCTGCTGTCGAAGGTATCTTCTTCAGCGGTAGCTT 708288 Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916 ||| |||| ||||| |||||||| || || ||||| || || |||||| ||||| Sbjct 708287 TGCCGCCATTTTCTGGCTGAAGAAGCGTGGACTGATGCCGGGACTTACCTTCTCGAACGA 708228 Query 94917 GCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||| || || ||||| || ||||| ||| || ||||| Sbjct 708227 GCTGATTTCGCGTGATGAAGGACTACACTGTGACTTTGC 708189 >seq574 Length=269012 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 168431 GTAAAGATATACCTCGTTTGAGACGC-ATCCTTACCACCCATGAGACGCGTACCAAACTG 168489 || ||||||||||| | || ||| |||||| || ||| | | |||||||||||||| Sbjct 37960 GTGAAGATATACCTGGGGCTAG-CGCTATCCTTTCCGCCCGTCAAGCGCGTACCAAACTG 38018 Query 168490 ACCACACGGCTCAAGAAGATTGATATTGTTTGAACCCATGTAGTCATTCGCCAACTTGAC 168549 ||| | || | || |||||||| || || || | ||||| | ||||| || || Sbjct 38019 ACCGCCAGGATAGAGCAGATTGATGTTATTGCTTCCGACGTAGTTCTGTGCCAAATTTAC 38078 Query 168550 AATCGTGTCCGCG-AGAGAGACT--TCACCGTGGTGGTACGCACTCTTCTCTGCGACAAA 168606 ||||| || | | || || | ||||| || ||||| || ||||| ||||| | Sbjct 38079 GATCGT---CGAGCAAAGCGATTGCTCACCATGATGGTAAGCGGATTTCTCCGCGACCGA 38135 Query 168607 TGCCGCCAACTGCGCCACTTTCATCTCATCCTTG 168640 | |||||||||||||| |||| |||| |||| Sbjct 38136 ACCTGCCAACTGCGCCACCTTCACCTCACGCTTG 38169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583250651262080