Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28]
1,392 sequences; 225,223,604 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq1171 120 4e-22
seq628 98.7 1e-15
seq574 87.8 2e-12
>seq1171
Length=2124680
Score = 120 bits (132), Expect = 4e-22
Identities = 281/416 (68%), Gaps = 10/416 (2%)
Strand=Plus/Plus
Query 9517 GATCTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATT 9576
||||| |||||| ||||| || || || | || || | || ||||| ||||| || ||
Sbjct 1105543 GATCTGACGATCGAAGCGTCCCGGTCGTAACAGTGCCTTGTCGAGGATGTCAACACGGTT 1105602
Query 9577 CGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAG 9636
||||||||| | || || | | ||| | | | ||| ||||||||||| ||| ||
Sbjct 1105603 CGTCGCGGCCAGCACTACCACATTGGTTGTAGTGTTAAATCCATCCATCTCCACCAACAG 1105662
Query 9637 TTGGTTAATAGTTTGTTCCCGTTCATCATT--CGCTG--GCATACCACCAGCACTGCGTT 9692
||| |||| || | ||| | || || ||| | || | ||| ||| || ||
Sbjct 1105663 TTGATTAAGGGTATTTTCTTGCTCCGAATGTCCGCCGAAGCTTTTG-CCACCAC-GCTTT 1105720
Query 9693 GCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGA 9752
| || |||||||| || || || ||||| | ||||| ||| |||| ||| || |
Sbjct 1105721 CGT--CCAACGGCATCGATTTCGTCGATGAATAGAATGCACGGTGCGTTTTTGCGTGCCA 1105778
Query 9753 CTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG 9812
| |||| | || ||||||||| | || |||||||||||||| |||| ||| | |
Sbjct 1105779 TTGCAAACATGTCGCGTACACGCGACGGTCCTACACCAACAAACATTTCCAAAAACTCCG 1105838
Query 9813 CGGCGGA-ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGA 9871
|||| || | |||||||| || || | |||||| ||| | || ||||| |
Sbjct 1105839 AACCGGACACGGT-AATGAAGGGTACGTTTGCTTCACCGGCAGTTGCCTTTGCGAGCAAC 1105897
Query 9872 GTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 9927
|| || |||||||||||| |||| | | ||| ||| ||||| || || ||
Sbjct 1105898 GTTTTGCCCGTACCTGGCGGGCCCGTTAACATGGCGCCTTTGGGAATTTTTGCTCC 1105953
>seq628
Length=1452984
Score = 98.7 bits (108), Expect = 1e-15
Identities = 117/159 (74%), Gaps = 0/159 (0%)
Strand=Plus/Minus
Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856
||||| ||||| || |||| ||||| ||| || |||||||||||| ||| |||
Sbjct 708347 CTTTGGCGAGCGTGTCGTCGCGTTTGCTGCTGTCGAAGGTATCTTCTTCAGCGGTAGCTT 708288
Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916
||| |||| ||||| |||||||| || || ||||| || || |||||| |||||
Sbjct 708287 TGCCGCCATTTTCTGGCTGAAGAAGCGTGGACTGATGCCGGGACTTACCTTCTCGAACGA 708228
Query 94917 GCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955
||| || || ||||| || ||||| ||| || |||||
Sbjct 708227 GCTGATTTCGCGTGATGAAGGACTACACTGTGACTTTGC 708189
>seq574
Length=269012
Score = 87.8 bits (96), Expect = 2e-12
Identities = 151/214 (71%), Gaps = 8/214 (4%)
Strand=Plus/Plus
Query 168431 GTAAAGATATACCTCGTTTGAGACGC-ATCCTTACCACCCATGAGACGCGTACCAAACTG 168489
|| ||||||||||| | || ||| |||||| || ||| | | ||||||||||||||
Sbjct 37960 GTGAAGATATACCTGGGGCTAG-CGCTATCCTTTCCGCCCGTCAAGCGCGTACCAAACTG 38018
Query 168490 ACCACACGGCTCAAGAAGATTGATATTGTTTGAACCCATGTAGTCATTCGCCAACTTGAC 168549
||| | || | || |||||||| || || || | ||||| | ||||| || ||
Sbjct 38019 ACCGCCAGGATAGAGCAGATTGATGTTATTGCTTCCGACGTAGTTCTGTGCCAAATTTAC 38078
Query 168550 AATCGTGTCCGCG-AGAGAGACT--TCACCGTGGTGGTACGCACTCTTCTCTGCGACAAA 168606
||||| || | | || || | ||||| || ||||| || ||||| ||||| |
Sbjct 38079 GATCGT---CGAGCAAAGCGATTGCTCACCATGATGGTAAGCGGATTTCTCCGCGACCGA 38135
Query 168607 TGCCGCCAACTGCGCCACTTTCATCTCATCCTTG 168640
| |||||||||||||| |||| |||| ||||
Sbjct 38136 ACCTGCCAACTGCGCCACCTTCACCTCACGCTTG 38169
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583250651262080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |