Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq451 224 3e-53 seq672 185 3e-41 seq949 172 2e-37 seq863 129 2e-24 seq213 91.5 4e-13 seq1205 89.7 2e-12 seq522 89.7 2e-12 seq58 89.7 2e-12 seq1172 87.8 5e-12 seq525 87.8 5e-12 seq478 87.8 5e-12 seq91 87.8 5e-12 >seq451 Length=710502 Score = 224 bits (248), Expect = 3e-53 Identities = 775/1200 (65%), Gaps = 14/1200 (1%) Strand=Plus/Plus Query 349475 GACGGTGATAAACCAATTATTGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCC 349534 ||||||| ||||| | | |||| || || || || || | || || || || Sbjct 407153 GACGGTGGCAAACCGAAGCTGCAGGTAGAGTACAAGGGCGATAAGAAGTCCTTCTTCCCG 407212 Query 349535 GAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGT 349594 || ||| |||| || ||||| | || |||||||||| || ||||| || | || Sbjct 407213 GAGGAAGTTTCCTCGATGGTGCTGACCAAGATGAAGGAAACGGCCGAAGCGTACCTGGGC 407272 Query 349595 GAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCT 349654 | | | | |||| || || || || ||||| || || || ||| | || ||| Sbjct 407273 AAGAGCATCGCCAATGCAGTCATCACGGTCCCAGCGTACTTCAACGATTCGCAACGTCAG 407332 Query 349655 GCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCC 349714 || || ||||||||||| || || || || ||||| || | || ||||| ||||| Sbjct 407333 GCCACTAAAGATGCTGGTGCGATCGCCGGTTTGAATGTGCTGCGCATCATTAACGAACCG 407392 Query 349715 ACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTT 349774 || || || || ||||| || ||||| || || | | || | || ||| | || Sbjct 407393 ACGGCAGCGGCCATTGCGTACGGGCTGGACAAGAAGGGTTCCGGCGAGCGTAATGTACTG 407452 Query 349775 ATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATT 349834 || || ||| | ||||||||||| || |||||||| | || || |||| || || ||| Sbjct 407453 ATCTTCGATCTTGGTGGTGGTACGTTCGATGTATCGATCCTTACCATTGAGGATGGCATT 407512 Query 349835 TTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGT 349894 ||||||||||| |||| ||||| ||||| || || ||||| || || ||||| ||||| Sbjct 407513 TTTGAAGTTAAGTCAACGGCTGGCGATACTCACCTGGGTGGGGAGGACTTTGACAATCGC 407572 Query 349895 CTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGC-TAAAATTGATATT-GGAG--A 349950 | || || || ||||| |||| |||||||| ||||| || | || ||| ||| | Sbjct 407573 ATGGTGTCCCACTTTGTCGAAGAGTTTAAGCG-CAAGCACAAGAAGGACATTACGAGCAA 407631 Query 349951 TAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATC 350010 || | | || |||| || | | || || || || || || |||||| | | || Sbjct 407632 CAAGC---GTGCGTTGCGCCGGTTGCGTACGGCTTGCGAGCGAGCAAAGCGTACACTGTC 407688 Query 350011 ATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTC 350070 | | ||||| | ||||| |||||||| || || || | ||||||| | Sbjct 407689 CGCATCGACCCAGGCAAGCATTGAGATTGATTCCCTGTTCGAGGGTATCGATTTCTACAC 407748 Query 350071 ATCTATTACACGTGCTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGA 350130 || ||||| | || || ||||| || | | |||||| || | | || ||||| Sbjct 407749 CTCCATTACGAGGGCACGCTTTGAGGAGCTTAATTCGGATCTGTTCCGTGACACGATGGA 407808 Query 350131 TCCTGTGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGT 350190 || || || | | | ||||| || ||| ||| ||| | || | || Sbjct 407809 ACCGGTATCGAAGGCACTGCGCGATGCCAAGATGGACAAGGCGAGCATTCACGACATTGT 407868 Query 350191 TTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAA 350250 | || ||||| || || || ||||| || || || || | || || || || || Sbjct 407869 ACTGGTGGGTGGATCGACTCGCATTCCCAAGGTGCAGAAGCTGCTGCAGGACTTCTTCAA 407928 Query 350251 TGGCAAAGAACCTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGT 350310 ||||| || | | ||| || ||||| |||||||| ||||| || ||||| || || Sbjct 407929 CGGCAAGGAGCTGAACAAATCGATCAATCCGGATGAAGCCGTTGCGTACGGTGCGGCGGT 407988 Query 350311 TCAGGCATCTATTTTATCTGGAAATAAGAGTTCTAA---AATTGATGATCTATTACTACT 350367 ||||| | ||| | | || | | | || | | | ||||| | || || Sbjct 407989 ACAGGCCGCCATTCT-GCAGG--GTGACACATCCGAGGCGGTACAGGATCTGCTGCTGCT 408045 Query 350368 AGATGTAACTCCACTTTCGCTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTAT 350427 || || || ||||| ||||| || | ||||| | || | || ||||| || || || Sbjct 408046 GGACGTGACACCACTGTCGCTCGGTATTGAAACGGCCGGCGGCGTTATGACGGTGCTGAT 408105 Query 350428 TCCTAGAAATAGTACTGTACCTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAA 350487 | |||| || | || || ||| || | ||||| ||| | || | | || || Sbjct 408106 CAAGCGCAATACCACCATTCCGACGAAACAGACGCAAACATTTACGACCTACTCGGACAA 408165 Query 350488 TCAGCCAGCGGTAACAATTCAAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAA 350547 ||||| | || ||||| || ||||||||||| ||||| || || || || || Sbjct 408166 CCAGCCCGGTGTGCTGATTCAGGTGTTTGAAGGTGAGCGTGCGATGACGAAGGACAACAA 408225 Query 350548 TAAACTTGGAGAATTTACCCTAAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGAT 350607 | | || | ||| || || | || || || || | || || || ||||| Sbjct 408226 TCTGTTGGGCAAGTTTGAGCTGAGCGGTATACCGCCGGCACCGCGTGGTGTGCCCCAGAT 408285 Query 350608 TGAAGTCTCTTTCGATATTGATTCAAATGGTATTTTAAATGTTACCGCAGTTGAAAAATC 350667 || || | |||||||| ||| | || |||||| | ||||| | ||| |||| ||||| Sbjct 408286 CGAGGTGACGTTCGATATCGATGCGAACGGTATTATGAATGTGTCGGCAATTGAGAAATC 408345 >seq672 Length=1102954 Score = 185 bits (204), Expect = 3e-41 Identities = 180/232 (78%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 140506 ACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAAT 140565 || |||||||||| | || || || |||||||| ||||| || || ||||| || || | Sbjct 391572 ACTTACCACCACGAAGTCGCAGCACCAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGT 391631 Query 140566 CAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAG 140625 | || | || || ||||| || || || || || || ||||| ||||| |||||||| | Sbjct 391632 CCGACAGAGTGCGGCCATCCTCCAGCTGCTTACCGGCGAAGATGAGACGCTGCTGATCTG 391691 Query 140626 GAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTT 140685 | ||||||||||| ||||||||||| || || || ||||| || |||| || || || | Sbjct 391692 GGGGAATTCCTTCCTTATCCTGAATCTTTGCCTTCACATTTTCGATCGTGTCCGAAGGCT 391751 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || |||||||| | ||||| ||||| |||||||| || ||||||||||| Sbjct 391752 CGACCTCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCAT 391803 >seq949 Length=1771395 Score = 172 bits (190), Expect = 2e-37 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 |||||||||| | || || ||||| ||||| || || || |||||||| || || || Sbjct 446670 CCACCACGTAGACGAAGGACCAGATGGAGAGTCGATTCCTTCTGAATATTGTAGTCCGAC 446729 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 | || || |||||||| | || || ||||||||||| ||||| |||||||| || || Sbjct 446730 AGCGTACGGCCATCTTCCAACTGCTTGCCAGCAAAGATCAGACGCTGCTGATCTGGTGGG 446789 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690 ||||| || ||||||||||| || || || ||||| || || | ||| ||||| ||||| Sbjct 446790 ATTCCCTCCTTATCCTGAATCTTGGCCTTAACATTCTCGATGGTATCGGATGGCTCAACC 446849 Query 140691 TCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 || || || | |||||||| ||||| || || || || ||||||||| Sbjct 446850 TCCAGGGTGATCGTCTTTCCAGTTAGAGTCTTGACGAAGATCTGCATT 446897 >seq863 Length=20514 Score = 129 bits (142), Expect = 2e-24 Identities = 243/357 (68%), Gaps = 3/357 (1%) Strand=Plus/Minus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591 || |||||||| || | ||||| | | || |||||||||| |||||||||||| | Sbjct 11235 CCGGAAGAAATCTCCGCCATGGTGCTGGGCAAGATGAAGGAAACGGCTGAAGCATATCTG 11176 Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651 || | | || || | ||||| | || ||||| ||||| ||||| |||||||||||| Sbjct 11175 GGCAAGAAGGTTACGCACGCTGTCGTCACGGTACCGGCCTACTTTAACGATGCCCAGCGT 11116 Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711 || || || ||||| || | || || ||| | || | | || ||||| ||| Sbjct 11115 CAGGCGACGAAGGATGCGGGAACGATCGCTGGGCTGGTGGTGATGCGTATCATTAACGAA 11056 Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATT 349771 || || || || || ||||| || || || || |||| | || ||||| ||| | Sbjct 11055 CCGACCGCGGCCGCCATTGCGTACGGTCTGGACAAAAAG---GATGGTGAAAAGAATGTG 10999 Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831 ||| | || ||| | || || ||||| || ||||| || || | || |||| | || Sbjct 10998 CTTGTGTTCGATCTTGGCGGCGGTACGTTCGATGTGTCGCTGTTGACGATTGACAACGGT 10939 Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGAT 349888 | || || || ||||| ||||| || ||||| || || |||||||| ||| Sbjct 10938 GTGTTCGAGGTGGTGGCAACGAACGGTGACACCCATCTGGGCGGTGAAGATTTCGAT 10882 Score = 87.8 bits (96), Expect = 5e-12 Identities = 140/198 (71%), Gaps = 5/198 (3%) Strand=Plus/Minus Query 349205 GGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTAGAA 349264 || || ||| | || || || || || || || | ||| | | || | ||||||||| Sbjct 11562 GGTATTGATCTCGGCACGACGTACTCCTGCGTCGGTGTGTACAAGAACGGACGTGTAGAA 11503 Query 349265 ATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTA---CCGAA 349321 || ||||| || |||||||||||| | | || || || ||||| ||||||| |||| Sbjct 11502 ATTATTGCCAACGATCAAGGTAACCGCATTACTCCCTCCTACGTGGCATTTACCGCCGAT 11443 Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTG-CTGCTAATCCAAAAAATAC 349380 || ||| | || |||||| | || ||||||| ||||| | | || || ||||||| Sbjct 11442 GGCGAACGTCTCATCGGTGATGCCGCCAAAAATC-AGCTGACGACGAACCCCGAAAATAC 11384 Query 349381 GGTTTTTGATGCTAAGCG 349398 || || ||||| || || Sbjct 11383 CGTGTTCGATGCAAAACG 11366 >seq213 Length=552028 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| ||| ||||||| ||||||||| ||||| ||||||||| |||||| | | Sbjct 410223 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACTGGGATCGATA 410164 Query 235950 CCCAGCATCTCCA 235962 ||||||||||||| Sbjct 410163 CCCAGCATCTCCA 410151 >seq1205 Length=740879 Score = 89.7 bits (98), Expect = 2e-12 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 235884 ATATAGGGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGA 235943 ||| | |||| ||||| ||| ||||||| ||||||||| ||||| |||||||||||||| Sbjct 560164 ATAGATGGGGGTGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACCGGGA 560105 Query 235944 TCAAAACCCAGCATCTCCA 235962 || | |||| ||||||||| Sbjct 560104 TCGATACCCGGCATCTCCA 560086 Score = 89.7 bits (98), Expect = 2e-12 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 235884 ATATAGGGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGA 235943 ||| | |||| ||||| ||| ||||||| ||||||||| ||||| |||||||||||||| Sbjct 572350 ATAGATGGGGGTGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACCGGGA 572291 Query 235944 TCAAAACCCAGCATCTCCA 235962 || | |||| ||||||||| Sbjct 572290 TCGATACCCGGCATCTCCA 572272 Score = 87.8 bits (96), Expect = 5e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||| ||||| ||| ||||||| ||||||||| ||||| |||||||||||||||| | | Sbjct 546461 GGGGGTGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACCGGGATCGATA 546402 Query 235950 CCCAGCATCTCCA 235962 ||| ||||||||| Sbjct 546401 CCCGGCATCTCCA 546389 >seq522 Length=317854 Score = 89.7 bits (98), Expect = 2e-12 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 235889 GGGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAA 235948 ||||| ||||| ||| ||||||| ||||||||| ||||| |||||||||||||||| | Sbjct 165013 GGGGGGTGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACCGGGATCGAT 164954 Query 235949 ACCCAGCATCTCCA 235962 |||| ||||||||| Sbjct 164953 ACCCGGCATCTCCA 164940 Score = 87.8 bits (96), Expect = 5e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||| ||||| ||| ||||||| ||||||||| ||||| |||||||||||||||| | | Sbjct 162869 GGGGGTGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACCGGGATCGATA 162928 Query 235950 CCCAGCATCTCCA 235962 ||| ||||||||| Sbjct 162929 CCCGGCATCTCCA 162941 >seq58 Length=702492 Score = 89.7 bits (98), Expect = 2e-12 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 235886 ATAGGGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATC 235945 || ||||| ||||| ||| ||||||| ||||||||| ||||| |||||||||||||||| Sbjct 13518 ATCGGGGGGTGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACCGGGATC 13577 Query 235946 AAAACCCAGCATCTCCA 235962 | |||| ||||||||| Sbjct 13578 GATACCCGGCATCTCCA 13594 >seq1172 Length=869145 Score = 87.8 bits (96), Expect = 5e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||| ||||| ||| ||||||| ||||||||| ||||| |||||||||||||||| | | Sbjct 778630 GGGGGTGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACCGGGATCGATA 778571 Query 235950 CCCAGCATCTCCA 235962 ||| ||||||||| Sbjct 778570 CCCGGCATCTCCA 778558 >seq525 Length=346721 Score = 87.8 bits (96), Expect = 5e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||| ||||| ||| ||||||| ||||||||| ||||| |||||||||||||||| | | Sbjct 78807 GGGGGTGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACCGGGATCGATA 78748 Query 235950 CCCAGCATCTCCA 235962 ||| ||||||||| Sbjct 78747 CCCGGCATCTCCA 78735 >seq478 Length=412236 Score = 87.8 bits (96), Expect = 5e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||| ||||| ||| ||||||| ||||||||| ||||| |||||||||||||||| | | Sbjct 8077 GGGGGTGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACCGGGATCGATA 8136 Query 235950 CCCAGCATCTCCA 235962 ||| ||||||||| Sbjct 8137 CCCGGCATCTCCA 8149 Score = 87.8 bits (96), Expect = 5e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||| ||||| ||| ||||||| ||||||||| ||||| |||||||||||||||| | | Sbjct 71219 GGGGGTGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACCGGGATCGATA 71278 Query 235950 CCCAGCATCTCCA 235962 ||| ||||||||| Sbjct 71279 CCCGGCATCTCCA 71291 >seq91 Length=612466 Score = 87.8 bits (96), Expect = 5e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||| ||||| ||| ||||||| ||||||||| ||||| |||||||||||||||| | | Sbjct 243059 GGGGGTGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACCGGGATCGATA 243000 Query 235950 CCCAGCATCTCCA 235962 ||| ||||||||| Sbjct 242999 CCCGGCATCTCCA 242987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515227375437776