Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28]
1,392 sequences; 225,223,604 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq872 253 2e-62
seq628 87.8 2e-12
>seq872
Length=887634
Score = 253 bits (280), Expect = 2e-62
Identities = 1119/1736 (64%), Gaps = 58/1736 (3%)
Strand=Plus/Minus
Query 19115 TTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTCCGCGAGACATAC 19174
|| ||||| || ||| ||||||| ||||| || ||| || || |||||| |||
Sbjct 222690 TTGATGCGCGTTGCGATCGGCATTCATGGTGAAGACATCGATGCAGCAATCGAGACTTAC 222631
Query 19175 GACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACG 19234
| ||| | || | ||| || || || | |||||| | || || | ||||
Sbjct 222630 AATCTGCTTTCGGAGCGCTACTTTACCCATGCCTCACCGACCATGTTTGCGGCGGCTACG 222571
Query 19235 AACAAC--CCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGG 19292
|||| |||||| ||||| ||||||| | | | ||| ||| ||||||||||| |
Sbjct 222570 --CAACGTCCGCAGTTGTCGTCCTGTTTCTTGCTCACCATGTCGGACGACAGCATTGAAG 222513
Query 19293 GCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGA 19352
| |||||||| ||||| ||| |||| || | || || || | | || || || |||
Sbjct 222512 GTATCTACGATACGCTGAAGCAGTGTGCACTGATTTCAAAATCTGCTGGCGGAATTGGGC 222453
Query 19353 TCCAC-TGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACGGAGTAGCC 19411
| || ||| | ||| || ||| ||||| ||| || ||||| ||| | |
Sbjct 222452 TGAACGTGCACTG-TATTCGCGCGAAAGGTACGTACATCTCGGGCACGAATGGAATTTCA 222394
Query 19412 GACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGG 19471
|||| | || |||||||| ||||| | |||||| |||||| | ||||| | |||||
Sbjct 222393 AACGGGTTGGTGCCAATGCTGCGCGTGTACAACAATACGGCCCGATACGTGGATCAGGGT 222334
Query 19472 GGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATG 19531
||| ||| ||| ||| | || |||||||||||||| || ||||||| || || |
Sbjct 222333 GGCAACAAGCGCCCGGGAGCTTTTGCCATCTACCTCGAACCGTGGCACGGTGATGTGTTC 222274
Query 19532 GATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTC 19591
|| || || || ||| ||| || | |||||| |||| |||||| | ||
Sbjct 222273 GAGTTTCTGGATCTGAAGAAAAACACCGGCAAAGAGGAGGTGCGTGCACGCGACATGTTT 222214
Query 19592 ACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCAC 19651
||||||||||||||||| || ||||||||| ||| ||| | ||||| |||
Sbjct 222213 TACGCCTTGTGGATTCCGGATCTGTTCATGGAGCGGGTGGAGGCGAACGAAATGTGGAGT 222154
Query 19652 CTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTTCAATGAG 19711
|| |||||||| ||||| || || || | | || || || || |||| | |
Sbjct 222153 CTAATGTGCCCTCACGATTGTCCCGGTTTGTCTGATAGCTGGGGTGAAAAGTTCGAGGCA 222094
Query 19712 TTGTAC-CGGACTTACGTAGCCCAGGGCCGGTTCAAGAAGGTGGTCCGGGCCCGGGACGT 19770
||||| | | | |||| |||| || || | ||| ||| | ||| |
Sbjct 222093 CTGTACACTGGC-TACGAGAAAGAGGGTCGTTTTATTCGCCAGGTGAAGGCACAGGATTT 222035
Query 19771 CTGGGACCGCG-TCCTCAAAAGCCAGGTCGAGACCGGCACACCGTACATGTGCTACAAGG 19829
| || |||| || | || ||||| || || ||| |||||| ||| |||||||
Sbjct 222034 GT-GGTTCGCGATCATTGAATCGCAGGTGGAAACGGGCGTACCGTATATGCTGTACAAGG 221976
Query 19830 ACGC-CGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATCAAGTCGTCCAACCTG 19888
| || || | ||| || | || ||| ||||||| ||| | || |||| || ||| ||
Sbjct 221975 ATGCATGCAACCGCAAAAGC-AACCAGCAGAACATTGGCACCATTAAGTGTTCTAACTTG 221917
Query 19889 TGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGTGTAATCTGGCGTCC 19948
|| ||||| || ||||| || | ||| || | ||| || || |||||||| ||
Sbjct 221916 TGCACTGAGATTGTGGAGTACTCGTCGAAGGATGAAATTGCGGTTTGCAATCTGGCCTCG 221857
Query 19949 CTGTGCCTGCCGACTTTCGTCAAGGCC---TCCTCCTTCGACTTTGCCAAATTGTACGAG 20005
| ||| | ||||| || || | | ||| || | || || | ||
Sbjct 221856 ATCGCACTGAACATGTTCGTAAAATCCGATAGGACGTACGATTTCGTAAAGCTGAAGGAT 221797
Query 20006 GTGACCCGGGTCGTCACGCGTAATCTGAATCGCGTCATCGATCGGAACTTTTACCC---G 20062
|| || | | || || || |||||||| ||||||| |||| || || |
Sbjct 221796 GTCGCCAAGATAGTAACACGCAATCTGAACAAAATCATCGACATAAACTACTATCCGGTG 221737
Query 20063 ACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGATCGCGATCGGCGTCCAGGGC 20122
| |||||| ||| || || ||||||||| |||| |||| ||||| || ||||||
Sbjct 221736 CCGGAGGCGAAGCG---TTCCAACATGCGCCACAGGCCCATCGGTATCGGTGTGCAGGGC 221680
Query 20123 CTGGCCGACGTTTTCATGATGCTCGGCCTCTCATTCGACGATCCCA-AGGCGCGCGAGC- 20180
||||||| | ||||| | | || ||| ||| | | | |||| | |||
Sbjct 221679 ATGGCCGATGCGTTCATTTTAATGCGCTATCCATACGA-AAGCGAAGAGGCCCAAAAGCT 221621
Query 20181 ---TCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCTCCTGGAATC---GTGCG 20234
||||||| || || || || | ||| | | || |||||| | ||||
Sbjct 221620 GAATCAACAA----ATATTTGAAACCATCTACTATGGAGC---ACTGGAAGCAAGCTGCG 221568
Query 20235 AACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCGCGTCCGAGGGTA 20294
|| | || | |||||| || |||||||||| | || | || | | | |||||
Sbjct 221567 AATTGGCTGCACGGGACGGTCCATACGAGACGTATGAAGGTTGTCCAGTGAGCAAGGGTG 221508
Query 20295 TCCTCCAGCCGGACATGTGGGGC--GTCACTGA-GAATGAGT---TTTGGAGCGCCCTCA 20348
|||| ||| || |||||| | || || | || || |||| | | |
Sbjct 221507 TCCTACAGTACGAAATGTGGAACAAAGAACCGACGGATCTGTGGAACTGGACAGAGTTGA 221448
Query 20349 AGGTTGAGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGCCGACCG 20408
||| |||| | ||||| |||| |||||| | || | || || |||||||| |
Sbjct 221447 AGGAGAAGATTGCAAAGCACGGTATTCGTAACTCGCTACTGCTGGCACCGATGCCGACAG 221388
Query 20409 CCTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCGTACACGACCAACATCT 20468
| ||||| || || || |||| ||||| ||| | ||||||||||||||| | ||| | |
Sbjct 221387 CTTCGACGGCACAAATATTGGGCAACAATGAGTCCTTCGAGCCGTACACGTCGAACGTTT 221328
Query 20469 ACTTGCGTCGTACACTGGCCGGTGAGTTCGTCATGGTAAACAAGCACCTGGTCCGCGA-C 20527
|| || ||| || | || |||||| |||| ||| | || ||| | | || |
Sbjct 221327 ACAACCGACGTGTGCTATCGGGCGAGTTCCAGGTGGTGAACCATCATCTGCTGCAAGATC 221268
Query 20528 TTGCAGAAGATCGATATGTGGTCGCCCAAAATTAAGAATGAAA--TTGTCCGAGCCGGCG 20585
| ||| ||| | | ||||| | | || ||||| | | |||||| | | |
Sbjct 221267 TAACAG-CGATGGGTTTGTGGGATCTTGACATGAAGAACAACATCTTGTCCAA--CAAC- 221212
Query 20586 GGAGCG--TCCAGGCATTGGAT--ATCCCCCAGAACCTCAAGGACATTTACAGGACCGTA 20641
||| || || | ||||| || || || || | || ||| | |||| ||| |||
Sbjct 221211 GGATCGATTCAAAACATTGAATCAATACCAAAGGAAATCCGCGACCTGTACAAGACGGTA 221152
Query 20642 TGGGAAATCCCACAGAAGAGCAT-CATCGACATGGCGGCCGATCGCGGCGCCTACATCGA 20700
||||| ||| | ||| | ||| |||| | |||||||||||||| || || | |||||
Sbjct 221151 TGGGAGATCTCGGTGAA-AACATCCATCAAAATGGCGGCCGATCGGGGAGCGTTTATCGA 221093
Query 20701 CCAGTCCCAGTCGCTCAATGTCTTCATGGAGAATCCGAGC-CTGGCGAAGCTGAGCTCCA 20759
||||| || || | || | | ||| | |||| | |||| ||||||| || |
Sbjct 221092 TCAGTCACAATCATTTAACATACACGTGGCCGAGCCGAACTATGGC-AAGCTGACGTCGA 221034
Query 20760 TGCATATGTACGGCTGGCACAAGGGGCTCAAGACGGGCATGTACTATCTGCGGACC 20815
| ||| | |||| ||| | | ||| || ||||||||||||||||| ||||| |||
Sbjct 221033 TCCATTTCTACGCGTGGAAGATGGGACTAAAGACGGGCATGTACTACCTGCGCACC 220978
Score = 199 bits (220), Expect = 4e-46
Identities = 897/1394 (64%), Gaps = 67/1394 (5%)
Strand=Plus/Plus
Query 78534 GTAGATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGA 78593
||| | ||| | ||||||||||||||| | ||| ||||| |||| || || || |||||
Sbjct 221326 GTAAACGTTCGACGTGTACGGCTCGAAGGACTCATTGTTGCCCAATATTTGTGCCGTCGA 221385
Query 78594 GGCGGTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGAC 78653
|| |||||||| ||||| | |||||| || || |||| ||| ||| | |||| |
Sbjct 221386 AGCTGTCGGCATCGGTGCCAGCAGTAGCGAGTTACGAATACCGTGCTTTGCAATCTTCTC 221445
Query 78654 CTTTA-----GGCC-GTCCCAAAATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAG 78707
||| | | || || ||| | || ||| | | |||||| || || ||
Sbjct 221446 CTTCAACTCTGTCCAGTTCCACAGATCCGTCGGTTCTTTGTTCCACATTTCGTACTGTAG 221505
Query 78708 GATACCCTCGGACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTG--GCG 78765
|| ||||| | | | || | || | |||||||||| | || || || || ||
Sbjct 221506 GACACCCTTGCTCACTGGACAACCTTCATACGTCTCGTATGGACCGTC--CCGTGCAGCC 221563
Query 78766 AGTTCGCA---TGACTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTG 78822
| |||||| || || ||| || | | ||| | | || || || ||||||
Sbjct 221564 AATTCGCAGCTTGCTTC---CAGTGCTCCATAGTAGATGGTTTCAAATAT----TTGTTG 221616
Query 78823 ----AGCTCGCGCGCCT-TGGTCTCGTCGAACGAAAGGCCGAGCATCATGAAGACATCGG 78877
|||| | |||| | || ||| | | | || | | ||||| ||||||
Sbjct 221617 ATTCAGCTTTTGGGCCTCTTCGCT-TTCGTATGGATAGCGCATTAAAATGAACGCATCGG 221675
Query 78878 CCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTTG---CTCTTTCGGGCCG 78934
||| |||||| || |||||| |||| || | ||||||||||||| | ||| ||
Sbjct 221676 CCATGCCCTGCACACCGATACCGATGGGCCTGTGGCGCATGTTGGAACGCTT------CG 221729
Query 78935 CCTCGG---TCGGGTAAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACCC 78991
|||| | ||| || |||| ||||||| |||||| || || || || | |
Sbjct 221730 CCTCCGGCACCGGATAGTAGTTTATGTCGATGATTTTGTTCAGATTGCGTGTTACTATCT 221789
Query 78992 GAGTCACCTCGTACAATTTGGCGAAATC-AAAATGATTTC--CTTTGATGAAAGTCGGTA 79048
| || || | || || ||||||| | | | || ||| | ||| | |
Sbjct 221790 TGGCGACATCCTTCAGCTTTACGAAATCGTACGTCCTATCGGATTTTACGAACATGTTCA 221849
Query 79049 GGCACAGCGATGCCAGGTTGCACACGGCCGTCTCGTCC--GGGCTAGAAACCTCGATGAT 79106
| | ||| ||||| ||||| || || | || ||| | | || | ||| | ||
Sbjct 221850 GTGCGATCGAGGCCAGATTGCAAACCGCAATTTCATCCTTCGACGAGTA--CTCCACAAT 221907
Query 79107 TTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTT 79166
|| |||||||| ||||| |||| |||||||| ||||||| ||||||||| || |||
Sbjct 221908 CTCAGTGCACAAGTTAGAACACTTAATGGTGCCAATGTTCTGCTGGTTGCTTTTGCGGTT 221967
Query 79167 ACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGA--GAACG 79224
|| || |||||||| ||| ||||| || || || ||||| | || | || ||
Sbjct 221968 GCATGCATCCTTGTACAGCATATACGGTACGCCCGTTTCCACCTG-CGATTCAATGATCG 222026
Query 79225 CCGTCCCAGATGTCCCGGGCCCGGACAACCTTCTTGTACCGACCCTGTGCGACGTACGTC 79284
|| ||| | ||| | ||| || | | ||||||| | |||| | |
Sbjct 222027 -CGAACCACAAATCCTGTGCCTTCACCTGGCGAATAAAACGACCCTCTTTCTCGTA-GCC 222084
Query 79285 CG-GTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGG 79343
| ||||| | | ||| || || || ||| | || || || || ||||| ||
Sbjct 222085 AGTGTACAGTGCCTCGAACTTTTCACCCCAGCTATCAGACAAACCGGGACAATCGTGAGG 222144
Query 79344 GCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCA 79403
|||||| || ||| |||| | ||| ||| ||||||||| || ||||| |||||
Sbjct 222145 GCACATTAGACTCCACATTTCGTTCGCCTCCACCCGCTCCATGAACAGATCCGGAATCCA 222204
Query 79404 CAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTC 79463
|| ||| || | |||||| ||||| |||||| | ||| ||| ||| ||
Sbjct 222205 CAAGGCGTAAAACATGTCGCGTGCACGCACCTCCTCTTTGCCGGTGTTTTTCTTCAGATC 222264
Query 79464 GAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCG 79523
||||| || | | || |||||||||| || || |||||||| || | ||| |||
Sbjct 222265 CAGAAACTCGAACACATCACCGTGCCACGGTTCGAGGTAGATGGCAAAAGCTCCCGGGCG 222324
Query 79524 CTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCAC 79583
|||| ||| ||||| | ||||| |||||||| |||||| | || || ||||| |||||
Sbjct 222325 CTTGTTGCCACCCTGATCCACGTATCGGGCCGTATTGTTGTACACGCGCAGCATTGGCAC 222384
Query 79584 GATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGA 79643
| |||| | | || ||||| || ||| ||||| |||| ||||| |
Sbjct 222385 CAACCCGTTTGAAATTCCATTCGTGCCCGAGATGTACGTACCTTTCGCGCGAAT-ACAGT 222443
Query 79644 GCA-GTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCT 79702
||| || | || || || || | | || || || | || |||| ||| ||||| |
Sbjct 222444 GCACGTTCAGCCCAATTCCGCCAGCAGATTTTGAAATCAGTGCACACTGCTTCAGCGTAT 222503
Query 79703 CGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTG 79762
||||||| || || || ||||||| ||| | || || ||| ||| ||||| ||| |
Sbjct 222504 CGTAGATACCTTCAATGCTGTCGTCCGACATGGTGAGCAAGAAACAGGACGACAACTGCG 222563
Query 79763 G--GTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCT 79820
| |||| |||| | || || | |||||| | || || || ||| | |||
Sbjct 222564 GACGTTG--CGTAGCCGCCGCAAACATGGTCGGTGAGGCATGGGTAAAG----TAGCGCT 222617
Query 79821 C----ATCAGATCGTACGTCTC-CTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACC 79875
| | ||||| ||| ||||| ||| || || ||| || || || ||||||| |
Sbjct 222618 CCGAAAGCAGATTGTAAGTCTCGATTGCTGC-ATCGATGTCTTCACCATGAATGCCGATC 222676
Query 79876 GCGACGCGCATGAA 79889
|| |||||||| ||
Sbjct 222677 GCAACGCGCATCAA 222690
>seq628
Length=1452984
Score = 87.8 bits (96), Expect = 2e-12
Identities = 106/139 (76%), Gaps = 4/139 (3%)
Strand=Plus/Minus
Query 59982 CGTCTCATAGCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGT-GCTA 60039
||| || | || ||||| ||| || ||||| ||||||||| || | | | || || |
Sbjct 708337 CGTGTCGTCGCGTTTGC-TGCTGTCGAAGGTATCTTCTTCAGCGG-TAGCTTTGCCGCCA 708280
Query 60040 TTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTT 60099
|||||||||| || |||||||| || |||||||| || | ||||| |||||||||||||
Sbjct 708279 TTTTCTGGCTGAAGAAGCGTGGACTGATGCCGGGACTTACCTTCTCGAACGAGCTGATTT 708220
Query 60100 CCCGGGACGAGGGCCTCCA 60118
| || || || || || ||
Sbjct 708219 CGCGTGATGAAGGACTACA 708201
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548515255668480
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