Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq872 253 2e-62 seq628 87.8 2e-12 >seq872 Length=887634 Score = 253 bits (280), Expect = 2e-62 Identities = 1119/1736 (64%), Gaps = 58/1736 (3%) Strand=Plus/Minus Query 19115 TTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTCCGCGAGACATAC 19174 || ||||| || ||| ||||||| ||||| || ||| || || |||||| ||| Sbjct 222690 TTGATGCGCGTTGCGATCGGCATTCATGGTGAAGACATCGATGCAGCAATCGAGACTTAC 222631 Query 19175 GACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACG 19234 | ||| | || | ||| || || || | |||||| | || || | |||| Sbjct 222630 AATCTGCTTTCGGAGCGCTACTTTACCCATGCCTCACCGACCATGTTTGCGGCGGCTACG 222571 Query 19235 AACAAC--CCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGG 19292 |||| |||||| ||||| ||||||| | | | ||| ||| ||||||||||| | Sbjct 222570 --CAACGTCCGCAGTTGTCGTCCTGTTTCTTGCTCACCATGTCGGACGACAGCATTGAAG 222513 Query 19293 GCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGA 19352 | |||||||| ||||| ||| |||| || | || || || | | || || || ||| Sbjct 222512 GTATCTACGATACGCTGAAGCAGTGTGCACTGATTTCAAAATCTGCTGGCGGAATTGGGC 222453 Query 19353 TCCAC-TGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACGGAGTAGCC 19411 | || ||| | ||| || ||| ||||| ||| || ||||| ||| | | Sbjct 222452 TGAACGTGCACTG-TATTCGCGCGAAAGGTACGTACATCTCGGGCACGAATGGAATTTCA 222394 Query 19412 GACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGG 19471 |||| | || |||||||| ||||| | |||||| |||||| | ||||| | ||||| Sbjct 222393 AACGGGTTGGTGCCAATGCTGCGCGTGTACAACAATACGGCCCGATACGTGGATCAGGGT 222334 Query 19472 GGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATG 19531 ||| ||| ||| ||| | || |||||||||||||| || ||||||| || || | Sbjct 222333 GGCAACAAGCGCCCGGGAGCTTTTGCCATCTACCTCGAACCGTGGCACGGTGATGTGTTC 222274 Query 19532 GATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTC 19591 || || || || ||| ||| || | |||||| |||| |||||| | || Sbjct 222273 GAGTTTCTGGATCTGAAGAAAAACACCGGCAAAGAGGAGGTGCGTGCACGCGACATGTTT 222214 Query 19592 ACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCAC 19651 ||||||||||||||||| || ||||||||| ||| ||| | ||||| ||| Sbjct 222213 TACGCCTTGTGGATTCCGGATCTGTTCATGGAGCGGGTGGAGGCGAACGAAATGTGGAGT 222154 Query 19652 CTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTTCAATGAG 19711 || |||||||| ||||| || || || | | || || || || |||| | | Sbjct 222153 CTAATGTGCCCTCACGATTGTCCCGGTTTGTCTGATAGCTGGGGTGAAAAGTTCGAGGCA 222094 Query 19712 TTGTAC-CGGACTTACGTAGCCCAGGGCCGGTTCAAGAAGGTGGTCCGGGCCCGGGACGT 19770 ||||| | | | |||| |||| || || | ||| ||| | ||| | Sbjct 222093 CTGTACACTGGC-TACGAGAAAGAGGGTCGTTTTATTCGCCAGGTGAAGGCACAGGATTT 222035 Query 19771 CTGGGACCGCG-TCCTCAAAAGCCAGGTCGAGACCGGCACACCGTACATGTGCTACAAGG 19829 | || |||| || | || ||||| || || ||| |||||| ||| ||||||| Sbjct 222034 GT-GGTTCGCGATCATTGAATCGCAGGTGGAAACGGGCGTACCGTATATGCTGTACAAGG 221976 Query 19830 ACGC-CGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATCAAGTCGTCCAACCTG 19888 | || || | ||| || | || ||| ||||||| ||| | || |||| || ||| || Sbjct 221975 ATGCATGCAACCGCAAAAGC-AACCAGCAGAACATTGGCACCATTAAGTGTTCTAACTTG 221917 Query 19889 TGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGTGTAATCTGGCGTCC 19948 || ||||| || ||||| || | ||| || | ||| || || |||||||| || Sbjct 221916 TGCACTGAGATTGTGGAGTACTCGTCGAAGGATGAAATTGCGGTTTGCAATCTGGCCTCG 221857 Query 19949 CTGTGCCTGCCGACTTTCGTCAAGGCC---TCCTCCTTCGACTTTGCCAAATTGTACGAG 20005 | ||| | ||||| || || | | ||| || | || || | || Sbjct 221856 ATCGCACTGAACATGTTCGTAAAATCCGATAGGACGTACGATTTCGTAAAGCTGAAGGAT 221797 Query 20006 GTGACCCGGGTCGTCACGCGTAATCTGAATCGCGTCATCGATCGGAACTTTTACCC---G 20062 || || | | || || || |||||||| ||||||| |||| || || | Sbjct 221796 GTCGCCAAGATAGTAACACGCAATCTGAACAAAATCATCGACATAAACTACTATCCGGTG 221737 Query 20063 ACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGATCGCGATCGGCGTCCAGGGC 20122 | |||||| ||| || || ||||||||| |||| |||| ||||| || |||||| Sbjct 221736 CCGGAGGCGAAGCG---TTCCAACATGCGCCACAGGCCCATCGGTATCGGTGTGCAGGGC 221680 Query 20123 CTGGCCGACGTTTTCATGATGCTCGGCCTCTCATTCGACGATCCCA-AGGCGCGCGAGC- 20180 ||||||| | ||||| | | || ||| ||| | | | |||| | ||| Sbjct 221679 ATGGCCGATGCGTTCATTTTAATGCGCTATCCATACGA-AAGCGAAGAGGCCCAAAAGCT 221621 Query 20181 ---TCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCTCCTGGAATC---GTGCG 20234 ||||||| || || || || | ||| | | || |||||| | |||| Sbjct 221620 GAATCAACAA----ATATTTGAAACCATCTACTATGGAGC---ACTGGAAGCAAGCTGCG 221568 Query 20235 AACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCGCGTCCGAGGGTA 20294 || | || | |||||| || |||||||||| | || | || | | | ||||| Sbjct 221567 AATTGGCTGCACGGGACGGTCCATACGAGACGTATGAAGGTTGTCCAGTGAGCAAGGGTG 221508 Query 20295 TCCTCCAGCCGGACATGTGGGGC--GTCACTGA-GAATGAGT---TTTGGAGCGCCCTCA 20348 |||| ||| || |||||| | || || | || || |||| | | | Sbjct 221507 TCCTACAGTACGAAATGTGGAACAAAGAACCGACGGATCTGTGGAACTGGACAGAGTTGA 221448 Query 20349 AGGTTGAGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGCCGACCG 20408 ||| |||| | ||||| |||| |||||| | || | || || |||||||| | Sbjct 221447 AGGAGAAGATTGCAAAGCACGGTATTCGTAACTCGCTACTGCTGGCACCGATGCCGACAG 221388 Query 20409 CCTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCGTACACGACCAACATCT 20468 | ||||| || || || |||| ||||| ||| | ||||||||||||||| | ||| | | Sbjct 221387 CTTCGACGGCACAAATATTGGGCAACAATGAGTCCTTCGAGCCGTACACGTCGAACGTTT 221328 Query 20469 ACTTGCGTCGTACACTGGCCGGTGAGTTCGTCATGGTAAACAAGCACCTGGTCCGCGA-C 20527 || || ||| || | || |||||| |||| ||| | || ||| | | || | Sbjct 221327 ACAACCGACGTGTGCTATCGGGCGAGTTCCAGGTGGTGAACCATCATCTGCTGCAAGATC 221268 Query 20528 TTGCAGAAGATCGATATGTGGTCGCCCAAAATTAAGAATGAAA--TTGTCCGAGCCGGCG 20585 | ||| ||| | | ||||| | | || ||||| | | |||||| | | | Sbjct 221267 TAACAG-CGATGGGTTTGTGGGATCTTGACATGAAGAACAACATCTTGTCCAA--CAAC- 221212 Query 20586 GGAGCG--TCCAGGCATTGGAT--ATCCCCCAGAACCTCAAGGACATTTACAGGACCGTA 20641 ||| || || | ||||| || || || || | || ||| | |||| ||| ||| Sbjct 221211 GGATCGATTCAAAACATTGAATCAATACCAAAGGAAATCCGCGACCTGTACAAGACGGTA 221152 Query 20642 TGGGAAATCCCACAGAAGAGCAT-CATCGACATGGCGGCCGATCGCGGCGCCTACATCGA 20700 ||||| ||| | ||| | ||| |||| | |||||||||||||| || || | ||||| Sbjct 221151 TGGGAGATCTCGGTGAA-AACATCCATCAAAATGGCGGCCGATCGGGGAGCGTTTATCGA 221093 Query 20701 CCAGTCCCAGTCGCTCAATGTCTTCATGGAGAATCCGAGC-CTGGCGAAGCTGAGCTCCA 20759 ||||| || || | || | | ||| | |||| | |||| ||||||| || | Sbjct 221092 TCAGTCACAATCATTTAACATACACGTGGCCGAGCCGAACTATGGC-AAGCTGACGTCGA 221034 Query 20760 TGCATATGTACGGCTGGCACAAGGGGCTCAAGACGGGCATGTACTATCTGCGGACC 20815 | ||| | |||| ||| | | ||| || ||||||||||||||||| ||||| ||| Sbjct 221033 TCCATTTCTACGCGTGGAAGATGGGACTAAAGACGGGCATGTACTACCTGCGCACC 220978 Score = 199 bits (220), Expect = 4e-46 Identities = 897/1394 (64%), Gaps = 67/1394 (5%) Strand=Plus/Plus Query 78534 GTAGATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGA 78593 ||| | ||| | ||||||||||||||| | ||| ||||| |||| || || || ||||| Sbjct 221326 GTAAACGTTCGACGTGTACGGCTCGAAGGACTCATTGTTGCCCAATATTTGTGCCGTCGA 221385 Query 78594 GGCGGTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGAC 78653 || |||||||| ||||| | |||||| || || |||| ||| ||| | |||| | Sbjct 221386 AGCTGTCGGCATCGGTGCCAGCAGTAGCGAGTTACGAATACCGTGCTTTGCAATCTTCTC 221445 Query 78654 CTTTA-----GGCC-GTCCCAAAATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAG 78707 ||| | | || || ||| | || ||| | | |||||| || || || Sbjct 221446 CTTCAACTCTGTCCAGTTCCACAGATCCGTCGGTTCTTTGTTCCACATTTCGTACTGTAG 221505 Query 78708 GATACCCTCGGACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTG--GCG 78765 || ||||| | | | || | || | |||||||||| | || || || || || Sbjct 221506 GACACCCTTGCTCACTGGACAACCTTCATACGTCTCGTATGGACCGTC--CCGTGCAGCC 221563 Query 78766 AGTTCGCA---TGACTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTG 78822 | |||||| || || ||| || | | ||| | | || || || |||||| Sbjct 221564 AATTCGCAGCTTGCTTC---CAGTGCTCCATAGTAGATGGTTTCAAATAT----TTGTTG 221616 Query 78823 ----AGCTCGCGCGCCT-TGGTCTCGTCGAACGAAAGGCCGAGCATCATGAAGACATCGG 78877 |||| | |||| | || ||| | | | || | | ||||| |||||| Sbjct 221617 ATTCAGCTTTTGGGCCTCTTCGCT-TTCGTATGGATAGCGCATTAAAATGAACGCATCGG 221675 Query 78878 CCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTTG---CTCTTTCGGGCCG 78934 ||| |||||| || |||||| |||| || | ||||||||||||| | ||| || Sbjct 221676 CCATGCCCTGCACACCGATACCGATGGGCCTGTGGCGCATGTTGGAACGCTT------CG 221729 Query 78935 CCTCGG---TCGGGTAAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACCC 78991 |||| | ||| || |||| ||||||| |||||| || || || || | | Sbjct 221730 CCTCCGGCACCGGATAGTAGTTTATGTCGATGATTTTGTTCAGATTGCGTGTTACTATCT 221789 Query 78992 GAGTCACCTCGTACAATTTGGCGAAATC-AAAATGATTTC--CTTTGATGAAAGTCGGTA 79048 | || || | || || ||||||| | | | || ||| | ||| | | Sbjct 221790 TGGCGACATCCTTCAGCTTTACGAAATCGTACGTCCTATCGGATTTTACGAACATGTTCA 221849 Query 79049 GGCACAGCGATGCCAGGTTGCACACGGCCGTCTCGTCC--GGGCTAGAAACCTCGATGAT 79106 | | ||| ||||| ||||| || || | || ||| | | || | ||| | || Sbjct 221850 GTGCGATCGAGGCCAGATTGCAAACCGCAATTTCATCCTTCGACGAGTA--CTCCACAAT 221907 Query 79107 TTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTT 79166 || |||||||| ||||| |||| |||||||| ||||||| ||||||||| || ||| Sbjct 221908 CTCAGTGCACAAGTTAGAACACTTAATGGTGCCAATGTTCTGCTGGTTGCTTTTGCGGTT 221967 Query 79167 ACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGA--GAACG 79224 || || |||||||| ||| ||||| || || || ||||| | || | || || Sbjct 221968 GCATGCATCCTTGTACAGCATATACGGTACGCCCGTTTCCACCTG-CGATTCAATGATCG 222026 Query 79225 CCGTCCCAGATGTCCCGGGCCCGGACAACCTTCTTGTACCGACCCTGTGCGACGTACGTC 79284 || ||| | ||| | ||| || | | ||||||| | |||| | | Sbjct 222027 -CGAACCACAAATCCTGTGCCTTCACCTGGCGAATAAAACGACCCTCTTTCTCGTA-GCC 222084 Query 79285 CG-GTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGG 79343 | ||||| | | ||| || || || ||| | || || || || ||||| || Sbjct 222085 AGTGTACAGTGCCTCGAACTTTTCACCCCAGCTATCAGACAAACCGGGACAATCGTGAGG 222144 Query 79344 GCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCA 79403 |||||| || ||| |||| | ||| ||| ||||||||| || ||||| ||||| Sbjct 222145 GCACATTAGACTCCACATTTCGTTCGCCTCCACCCGCTCCATGAACAGATCCGGAATCCA 222204 Query 79404 CAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTC 79463 || ||| || | |||||| ||||| |||||| | ||| ||| ||| || Sbjct 222205 CAAGGCGTAAAACATGTCGCGTGCACGCACCTCCTCTTTGCCGGTGTTTTTCTTCAGATC 222264 Query 79464 GAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCG 79523 ||||| || | | || |||||||||| || || |||||||| || | ||| ||| Sbjct 222265 CAGAAACTCGAACACATCACCGTGCCACGGTTCGAGGTAGATGGCAAAAGCTCCCGGGCG 222324 Query 79524 CTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCAC 79583 |||| ||| ||||| | ||||| |||||||| |||||| | || || ||||| ||||| Sbjct 222325 CTTGTTGCCACCCTGATCCACGTATCGGGCCGTATTGTTGTACACGCGCAGCATTGGCAC 222384 Query 79584 GATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGA 79643 | |||| | | || ||||| || ||| ||||| |||| ||||| | Sbjct 222385 CAACCCGTTTGAAATTCCATTCGTGCCCGAGATGTACGTACCTTTCGCGCGAAT-ACAGT 222443 Query 79644 GCA-GTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCT 79702 ||| || | || || || || | | || || || | || |||| ||| ||||| | Sbjct 222444 GCACGTTCAGCCCAATTCCGCCAGCAGATTTTGAAATCAGTGCACACTGCTTCAGCGTAT 222503 Query 79703 CGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTG 79762 ||||||| || || || ||||||| ||| | || || ||| ||| ||||| ||| | Sbjct 222504 CGTAGATACCTTCAATGCTGTCGTCCGACATGGTGAGCAAGAAACAGGACGACAACTGCG 222563 Query 79763 G--GTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCT 79820 | |||| |||| | || || | |||||| | || || || ||| | ||| Sbjct 222564 GACGTTG--CGTAGCCGCCGCAAACATGGTCGGTGAGGCATGGGTAAAG----TAGCGCT 222617 Query 79821 C----ATCAGATCGTACGTCTC-CTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACC 79875 | | ||||| ||| ||||| ||| || || ||| || || || ||||||| | Sbjct 222618 CCGAAAGCAGATTGTAAGTCTCGATTGCTGC-ATCGATGTCTTCACCATGAATGCCGATC 222676 Query 79876 GCGACGCGCATGAA 79889 || |||||||| || Sbjct 222677 GCAACGCGCATCAA 222690 >seq628 Length=1452984 Score = 87.8 bits (96), Expect = 2e-12 Identities = 106/139 (76%), Gaps = 4/139 (3%) Strand=Plus/Minus Query 59982 CGTCTCATAGCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGT-GCTA 60039 ||| || | || ||||| ||| || ||||| ||||||||| || | | | || || | Sbjct 708337 CGTGTCGTCGCGTTTGC-TGCTGTCGAAGGTATCTTCTTCAGCGG-TAGCTTTGCCGCCA 708280 Query 60040 TTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTT 60099 |||||||||| || |||||||| || |||||||| || | ||||| ||||||||||||| Sbjct 708279 TTTTCTGGCTGAAGAAGCGTGGACTGATGCCGGGACTTACCTTCTCGAACGAGCTGATTT 708220 Query 60100 CCCGGGACGAGGGCCTCCA 60118 | || || || || || || Sbjct 708219 CGCGTGATGAAGGACTACA 708201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548515255668480