Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq872 159 4e-34 seq574 132 5e-26 seq1360 125 8e-24 seq628 91.5 2e-13 >seq872 Length=887634 Score = 159 bits (176), Expect = 4e-34 Identities = 332/488 (68%), Gaps = 6/488 (1%) Strand=Plus/Minus Query 53270 TACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCG 53329 |||||||| || ||| | || ||| |||| || | |||| | | || ||| ||||| Sbjct 222612 TACTTTACCCATGCCTCACCGACCATGTTTGCGGCGGCTACGCAACGTCCGCAGTTGTCG 222553 Query 53330 AGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAG 53389 ||| ||| || | | ||| ||| ||| || || || |||||||| ||||| ||| Sbjct 222552 TCCTGTTTCTTGCTCACCATGTCGGACGACAGCATTGAAGGTATCTACGATACGCTGAAG 222493 Query 53390 GAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCAC-TGCTC-GAACGTCC 53447 ||||||| | || || || | | || || || || | || ||| | | | | | Sbjct 222492 CAGTGTGCACTGATTTCAAAATCTGCTGGCGGAATTGGGCTGAACGTGCACTGTA--TTC 222435 Query 53448 GTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGC 53507 | ||||| || || ||| ||| ||||| || | | | || | ||||| |||| Sbjct 222434 GCGCGAAAGGTACGTACATCTCGGGCACGAATGGAATTTCAAACGGGTTGGTGCCAATGC 222375 Query 53508 TCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGT 53567 | ||||| | |||||| |||||||| ||||| | |||||||| |||||| ||| Sbjct 222374 TGCGCGTGTACAACAATACGGCCCGATACGTGGATCAGGGTGGCAACAAGCGCCCGGGAG 222315 Query 53568 CGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTC 53627 | || |||||||||||||| |||||||||| || | | |||||||| || ||| Sbjct 222314 CTTTTGCCATCTACCTCGAACCGTGGCACGGTGATGTGTTCGAGTTTCTGGATCTGAAGA 222255 Query 53628 TGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGTTTACAGCTCTGTGGATTCCG 53686 || || | || ||| |||| ||| || ||| ||||| || ||||||||||| Sbjct 222254 AAAACACCGGCAAAGAGGAGGTGCG-TGCACGCGACATGTTTTACGCCTTGTGGATTCCG 222196 Query 53687 GACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAG 53746 || || |||||| | ||||||| | |||| |||| || |||||||| |||| Sbjct 222195 GATCTGTTCATGGAGCGGGTGGAGGCGAACGAAATGTGGAGTCTAATGTGCCCTCACGAT 222136 Query 53747 TGCCCCGG 53754 || ||||| Sbjct 222135 TGTCCCGG 222128 >seq574 Length=269012 Score = 132 bits (146), Expect = 5e-26 Identities = 301/450 (67%), Gaps = 16/450 (4%) Strand=Plus/Plus Query 151874 ATCCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAA 151933 |||||||||| || || ||||||||||||| || | |||||| | || || || Sbjct 37805 ATCCGGTACCAATACCATCTGCACCGTTGATCAACAGCATCGGTATTATCGGCAGATACC 37864 Query 151934 ACTCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCG 151993 || || || | | ||| ||| || | | || | ||| | | || ||| || Sbjct 37865 ACAAAGGTTCAATGCGCTGATTGTCGTCGAGCTGATAATCCAACAGAGGATCGTCGAGCG 37924 Query 151994 GATCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCG 152053 ||| ||| || | || |||| | ||| ||||||||| || | || ||| || Sbjct 37925 GATGGAAAATGCAGCGCGTCAGCGACGACAACATCGTGAAGATATACCTGGGGCTAGCGC 37984 Query 152054 CATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGT 152113 |||||| || || | || ||||| |||||||| || || | ||| || |||| || Sbjct 37985 TATCCTTTCCGCCCGTCAAGCGCGTACCAAACTGACCGCCAGGATAGAGCAGATTGATGT 38044 Query 152114 TGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTT--- 152170 | ||| || ||| | ||||| |||||||| || ||||| | ||| | || || Sbjct 38045 TATTGCTTCCGACGTAGTTCTGTGCCAAATTTACGATCGT--CGAGCAAAG-CGATTGCT 38101 Query 152171 CACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGT 152230 |||| || || || || | | |||||||| | || ||||||||||||||||||| | Sbjct 38102 CACCATGATGGTAAGCGGATTTCTCCGCGACCGAACCTGCCAACTGCGCCACCTTCACCT 38161 Query 152231 CC-----GTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTT 152285 | ||||||| | ||||| |||| | | | |||||| || || ||||| Sbjct 38162 CACGCTTGTCGTCACG-----CTTGAAGCAGGTGAATAGCACCTTCCGTTGACCCGGTTT 38216 Query 152286 CAAACCGTCCACCACGTGAGGAATCGAACG 152315 ||||||||||| || | ||||||||||| Sbjct 38217 CAAACCGTCCAGCATGCACGGAATCGAACG 38246 Score = 98.7 bits (108), Expect = 1e-15 Identities = 272/412 (66%), Gaps = 19/412 (5%) Strand=Plus/Plus Query 117977 AGCTGAGGCCAGTACACGTGGATCATGTTCAGCACGAGCCCCTTGATATGGGAACCGTCC 118036 |||| ||||||| ||| || | ||| | || | ||||| || || ||||||||| Sbjct 38695 AGCTCTGGCCAGTTGGTGTGTATAAAGTTAATCAACAAACCCTTAATGTGAGAACCGTCC 38754 Query 118037 AGATCCGCATCGGTCATGATCATCAGGCGGCCGTACCGTAAA-TCTCTCA----GGGAGT 118091 ||||| ||| ||||| ||||||| ||||| |||| ||| ||| | ||| Sbjct 38755 TGATCCTGATCTGTCATAATCATCACCTTTCCGTAGCGTAGCGTCT-TCAAATCGTCAGT 38813 Query 118092 TATAA---ACCTTACCATGT--TGGAGCCCGAGGATCTTTTTAAGGTTGGAAAATTCCTC 118146 ||| || | | ||| || || || || ||||| | || ||| || ||| | Sbjct 38814 CGTAAGATACTTCTTCTTGTACTGCAGGCCAAGAATCTTGATCAGATTGTTAATTTCAGC 38873 Query 118147 ATTTTCCGTCACCTGTTTTATGGTGGCGTCCCGAACGTTGCGCGGCTTACCCCGCAGTGG 118206 ||| ||| | ||| || ||||| || || || || | | ||||| ||||| || Sbjct 38874 ATTCTCCAAAATCTGCTTGTGAGTGGCCTCGCGTACATTTAACAGTTTACCGCGCAGCGG 38933 Query 118207 AAACACGCCAAACTTGTCACGGCCCACAACGCTCAAGCCGGCAATAGCAAGGGCCTTCGC 118266 |||||| || || | ||||| || || || | ||| |||| || || | | || || Sbjct 38934 AAACACTCCGTACGTATCACGACCTACCACCCCCAAACCGGAAACGGCCAACGTTTTGGC 38993 Query 118267 CGAGTCACCCTCGGTAATAATAAGAGTGCACTCGGTGCTGCGAT----GAGTACCGGCCC 118322 ||| || |||||||||| ||| || || || || |||| | ||||| || Sbjct 38994 CGAATCTCCCTCGGTAAGAATGAGTGTACA----GTTTAGCGAATTGCGCGTACCAGCAT 39049 Query 118323 AATTAGCATCATCCAGCTTCGGAACGCCCGTAATGCGCGACTTTTTGGACCC 118374 ||||| || ||||||||||| |||||| | || |||||||| || || Sbjct 39050 CGTTAGCGTCTTCCAGCTTCGGGACGCCCTTTATCTTGGACTTTTTCGAACC 39101 >seq1360 Length=640366 Score = 125 bits (138), Expect = 8e-24 Identities = 251/367 (68%), Gaps = 19/367 (5%) Strand=Plus/Minus Query 124488 TCGATAAACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCTTCGGGAATC 124547 |||| ||| ||||| | |||||| |||||||| |||| || || ||||| || | Sbjct 380943 TCGACAAATTCACGCACCGAGTGCGTTTCACCCGTCGCAATTACAAAGTCTTCCGGTTTG 380884 Query 124548 GACTGCTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGC 124607 |||||||| |||||||||||| |||| |||||| || | |||||| |||||||| || Sbjct 380883 TCCTGCTGCATCATAAGCCACATCGCTTCGACGTAATCTTTTGCGTGGCCCCAGTCACGT 380824 Query 124608 TTGGCATCCAGGTTTCCGAGCTC--GATTGGCT---TGGCCG-----TCTTGTTCCACTC 124657 || | || || || || ||||| ||| || |||||| || || | Sbjct 380823 TTCGAGTCGAGATTACCCAGCTCCAGATACTCTTGCTGGCCGAGCGAAATTTTT----GC 380768 Query 124658 CGCCAAACCCAGTGTAATCTTGCGCGTCACAAACTCGGAACCGCGTCGCTCAGACTCGTG 124717 | || | | | ||||| |||||||| ||||| | || || ||| |||||||| Sbjct 380767 CACCGAGC---GGGTAATTTTGCGCGTTACAAAATTTTCTCCCCGGCGCGGTGACTCGTG 380711 Query 124718 GTTGAACAGAATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTTCGTCAT 124777 ||| || ||||| || | || || ||||| |||||| ||||| |||||| || || Sbjct 380710 GTTAAAGAGAATCCCGTTGCAGGCGAACATGTCGTACGCTTCGCGATAGTTTATCACAAT 380651 Query 124778 CCAATACCCAAAGAGCTT-GGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGTGTTTT 124836 ||| || || | | ||| | ||| | | || || || || ||||| || || |||| Sbjct 380650 CCAGTATCCGTACATCTTCGCACAAG-CGTACGGTGAGCGTGGATAGAACGGAGTCTTTT 380592 Query 124837 CATTTTG 124843 | || || Sbjct 380591 CGTTCTG 380585 Score = 120 bits (132), Expect = 3e-22 Identities = 203/292 (70%), Gaps = 23/292 (8%) Strand=Plus/Minus Query 158958 GTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGCTGTTGGAGCATGAGCCA 159017 |||||| || || |||||||| |||||||| || || | ||| || | ||| ||||| Sbjct 380923 GTGCGTTTCACCCGTCGCAATTACAAAGTCTTCCGGTTTGTCCTGCTGCATCATAAGCCA 380864 Query 159018 CATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGCATCCATGTTCCCGAG 159077 ||| || ||||||||||| | ||||| |||||||| || || | || | || || || Sbjct 380863 CATCGCTTCGACGTAATCTTTTGCGTGGCCCCAGTCACGTTTCGAGTCGAGATTACCCAG 380804 Query 159078 CTC--GATGACTTTTCCAG---------ACTTTTTCCACTCAGCCAGACCGAGC--GTGA 159124 ||| ||| ||| || | | | ||||| ||| ||||||| || | Sbjct 380803 CTCCAGAT-ACTCTTGCTGGCCGAGCGAAATTTTT-------GCC--ACCGAGCGGGTAA 380754 Query 159125 TCTTGCGCGTCACAAACTCTGCTCCGCGCCGTTCCGACTCATGGTTAAACAGAATGCCGG 159184 | |||||||| ||||| | | |||| || || ||||| |||||||| ||||| ||| Sbjct 380753 TTTTGCGCGTTACAAAATTTTCTCCCCGGCGCGGTGACTCGTGGTTAAAGAGAATCCCGT 380694 Query 159185 TACAAGCGAACAGGTTATAGGACTCGCGGTAATTTTTAGTTATCCAGTATCC 159236 | || ||||||| || || | ||||| || ||| | ||||||||||| Sbjct 380693 TGCAGGCGAACATGTCGTACGCTTCGCGATAGTTTATCACAATCCAGTATCC 380642 >seq628 Length=1452984 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 74784 ATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATG 74843 |||| || ||||| || | ||| || ||||| |||||||||||||||| ||| || ||| Sbjct 708222 ATCAGCTCGTTCGAGAAGGTAAGTCCCGGCATCAGTCCACGCTTCTTCAGCCAGAAAATG 708281 Query 74844 GCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGAC 74893 || ||| ||| ||||||||||| ||||||||| ||||| ||||| Sbjct 708282 GCGGCAAAGCTACCGCTGAAGAAGATACCTTCGACAGCAGCAAACGCGAC 708331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547206478441600