Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq949 188 8e-43 seq672 172 6e-38 seq575 158 1e-33 seq574 95.1 1e-14 >seq949 Length=1771395 Score = 188 bits (208), Expect = 8e-43 Identities = 179/229 (78%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| |||||||| || || || ||||| || || || ||||||||| || Sbjct 446897 AATGCAGATCTTCGTCAAGACTCTAACTGGAAAGACGATCACCCTGGAGGTTGAGCCATC 446838 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| ||| | ||| | ||||| || |||||||| ||||||||||| || ||||| || Sbjct 446837 CGATACCATCGAGAATGTTAAGGCCAAGATTCAGGATAAGGAGGGAATCCCACCAGATCA 446778 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||||| || |||||||| ||||| | || |||| ||||| || | ||||| || Sbjct 446777 GCAGCGTCTGATCTTTGCTGGCAAGCAGTTGGAAGATGGCCGTACGCTGTCGGACTACAA 446718 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | | || |||||||| ||||| ||||| ||| | ||||| || |||||| Sbjct 446717 TATTCAGAAGGAATCGACTCTCCATCTGGTCCTTCGTCTACGTGGTGGA 446669 >seq672 Length=1102954 Score = 172 bits (190), Expect = 6e-38 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| || || || || || || ||||||||||| || || |||||||| ||| | Sbjct 391806 ATCATGCAGATTTTCGTGAAAACACTCACCGGCAAGACCATCACACTTGAGGTCGAGCCT 391747 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || | || | |||| ||||||| || |||||||| ||||| |||||||| ||||| Sbjct 391746 TCGGACACGATCGAAAATGTGAAGGCAAAGATTCAGGATAAGGAAGGAATTCCCCCAGAT 391687 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 ||||||||||| || || || |||||||| || ||||||| || || || | ||||| Sbjct 391686 CAGCAGCGTCTCATCTTCGCCGGTAAGCAGCTGGAGGATGGCCGCACTCTGTCGGACTAC 391627 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || | || |||||||| || |||||||| || |||| ||||| ||||| Sbjct 391626 AACATTCAGAAGGAATCTACCCTTCATCTGGTGCTGCGACTTCGTGGTGG 391577 >seq575 Length=281738 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| ||||| || || || || ||||||||||| |||||||| ||| | Sbjct 23946 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACTATTACCCTTGAGGTCGAGCCCTCG 24005 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| ||||||| || || ||||| |||||||| || || || || ||| Sbjct 24006 GATACGATCGAGAATGTGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCGCCGGATCAG 24065 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | || || || |||||||| || ||||||| || || || | |||||||| Sbjct 24066 CAGCGTTTGATCTTCGCCGGTAAGCAGCTGGAGGATGGACGCACACTGTCTGACTATAAC 24125 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || || |||||||| || | || || |||||||| Sbjct 24126 ATTCAGAAGGAGTCGACCCTTCATCTGGTGCTTCGCCTGCGCGGTGG 24172 >seq574 Length=269012 Score = 95.1 bits (104), Expect = 1e-14 Identities = 181/267 (68%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 31177 GGGTCCAAAAAGTCTCGAATTACGGGAATTCCGAAGCTCGACGACGCCAACTGGGCCGGT 31236 || || |||||||| || | ||| | |||||||| || ||||| ||| || ||| Sbjct 39101 GGTTCGAAAAAGTCCAAGATAAAGGGCGTCCCGAAGCTGGAAGACGCTAACGATGCTGGT 39042 Query 31237 ACCCACAAGTCGCACGAGTGCACGCTTATTATTACCGAGGGTGACTCGGCAAAGGCGCTT 31296 || | ||| |||| | || || || ||| |||||||||| || ||||| || || | Sbjct 39041 ACGCGCAATTCGCTAAACTGTACACTCATTCTTACCGAGGGAGATTCGGCCAAAACGTTG 38982 Query 31297 GCTATTGCTGGCTTGAGTGTTGTGGGGCGCAATGCGTTCGGGGTGTTTCCGCTCCGAGGC 31356 || || | || ||| | || || || || || ||| ||| ||||||||||| || || Sbjct 38981 GCCGTTTCCGGTTTGGGGGTGGTAGGTCGTGATACGTACGGAGTGTTTCCGCTGCGCGGT 38922 Query 31357 AAGCCGCGTAACGTTCGTGACGCCTCCGTTAAACAGGTTACGGATAATGAAGAGTTTTCC 31416 || | | || || || || ||| | || ||| || ||| |||| || || | Sbjct 38921 AAACTGTTAAATGTACGCGAGGCCACTCACAAGCAGATTTTGGAGAATGCTGAAATTAAC 38862 Query 31417 AACCTGAAAAAGATCCTCGGGCTTCAG 31443 || |||| ||||| || || || ||| Sbjct 38861 AATCTGATCAAGATTCTTGGCCTGCAG 38835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570300476599040