Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28]
1,392 sequences; 225,223,604 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq949 188 8e-43
seq672 172 6e-38
seq575 158 1e-33
seq574 95.1 1e-14
>seq949
Length=1771395
Score = 188 bits (208), Expect = 8e-43
Identities = 179/229 (78%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||| ||||| |||||||| || || || ||||| || || || ||||||||| ||
Sbjct 446897 AATGCAGATCTTCGTCAAGACTCTAACTGGAAAGACGATCACCCTGGAGGTTGAGCCATC 446838
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|||| ||| | ||| | ||||| || |||||||| ||||||||||| || ||||| ||
Sbjct 446837 CGATACCATCGAGAATGTTAAGGCCAAGATTCAGGATAAGGAGGGAATCCCACCAGATCA 446778
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
||||||||| || |||||||| ||||| | || |||| ||||| || | ||||| ||
Sbjct 446777 GCAGCGTCTGATCTTTGCTGGCAAGCAGTTGGAAGATGGCCGTACGCTGTCGGACTACAA 446718
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633
| | || |||||||| ||||| ||||| ||| | ||||| || ||||||
Sbjct 446717 TATTCAGAAGGAATCGACTCTCCATCTGGTCCTTCGTCTACGTGGTGGA 446669
>seq672
Length=1102954
Score = 172 bits (190), Expect = 6e-38
Identities = 176/230 (77%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462
|| ||||| || || || || || || ||||||||||| || || |||||||| ||| |
Sbjct 391806 ATCATGCAGATTTTCGTGAAAACACTCACCGGCAAGACCATCACACTTGAGGTCGAGCCT 391747
Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522
|| | || | |||| ||||||| || |||||||| ||||| |||||||| |||||
Sbjct 391746 TCGGACACGATCGAAAATGTGAAGGCAAAGATTCAGGATAAGGAAGGAATTCCCCCAGAT 391687
Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582
||||||||||| || || || |||||||| || ||||||| || || || | |||||
Sbjct 391686 CAGCAGCGTCTCATCTTCGCCGGTAAGCAGCTGGAGGATGGCCGCACTCTGTCGGACTAC 391627
Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|| | || |||||||| || |||||||| || |||| ||||| |||||
Sbjct 391626 AACATTCAGAAGGAATCTACCCTTCATCTGGTGCTGCGACTTCGTGGTGG 391577
>seq575
Length=281738
Score = 158 bits (174), Expect = 1e-33
Identities = 171/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| ||||| || || || || ||||||||||| |||||||| ||| |
Sbjct 23946 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACTATTACCCTTGAGGTCGAGCCCTCG 24005
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| || | ||| ||||||| || || ||||| |||||||| || || || || |||
Sbjct 24006 GATACGATCGAGAATGTGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCGCCGGATCAG 24065
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||| | || || || |||||||| || ||||||| || || || | ||||||||
Sbjct 24066 CAGCGTTTGATCTTCGCCGGTAAGCAGCTGGAGGATGGACGCACACTGTCTGACTATAAC 24125
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| || ||||| || || |||||||| || | || || ||||||||
Sbjct 24126 ATTCAGAAGGAGTCGACCCTTCATCTGGTGCTTCGCCTGCGCGGTGG 24172
>seq574
Length=269012
Score = 95.1 bits (104), Expect = 1e-14
Identities = 181/267 (68%), Gaps = 0/267 (0%)
Strand=Plus/Minus
Query 31177 GGGTCCAAAAAGTCTCGAATTACGGGAATTCCGAAGCTCGACGACGCCAACTGGGCCGGT 31236
|| || |||||||| || | ||| | |||||||| || ||||| ||| || |||
Sbjct 39101 GGTTCGAAAAAGTCCAAGATAAAGGGCGTCCCGAAGCTGGAAGACGCTAACGATGCTGGT 39042
Query 31237 ACCCACAAGTCGCACGAGTGCACGCTTATTATTACCGAGGGTGACTCGGCAAAGGCGCTT 31296
|| | ||| |||| | || || || ||| |||||||||| || ||||| || || |
Sbjct 39041 ACGCGCAATTCGCTAAACTGTACACTCATTCTTACCGAGGGAGATTCGGCCAAAACGTTG 38982
Query 31297 GCTATTGCTGGCTTGAGTGTTGTGGGGCGCAATGCGTTCGGGGTGTTTCCGCTCCGAGGC 31356
|| || | || ||| | || || || || || ||| ||| ||||||||||| || ||
Sbjct 38981 GCCGTTTCCGGTTTGGGGGTGGTAGGTCGTGATACGTACGGAGTGTTTCCGCTGCGCGGT 38922
Query 31357 AAGCCGCGTAACGTTCGTGACGCCTCCGTTAAACAGGTTACGGATAATGAAGAGTTTTCC 31416
|| | | || || || || ||| | || ||| || ||| |||| || || |
Sbjct 38921 AAACTGTTAAATGTACGCGAGGCCACTCACAAGCAGATTTTGGAGAATGCTGAAATTAAC 38862
Query 31417 AACCTGAAAAAGATCCTCGGGCTTCAG 31443
|| |||| ||||| || || || |||
Sbjct 38861 AATCTGATCAAGATTCTTGGCCTGCAG 38835
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570300476599040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |