Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28]
1,392 sequences; 225,223,604 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq575 95.1 8e-15
seq672 82.4 5e-11
>seq575
Length=281738
Score = 95.1 bits (104), Expect = 8e-15
Identities = 154/219 (70%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
|| || | ||||| ||| || || |||||| ||||||||||| || || ||||| ||
Sbjct 24163 AGGCGAAGCACCAGATGAAGGGTCGACTCCTTCTGAATGTTATAGTCAGACAGTGTGCGT 24104
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || || || || |||||||| || || |||||||| || |||||||| | ||||||
Sbjct 24103 CCATCCTCCAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCCGGCGGGATGCCCTCC 24044
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
|| || |||| || | || || | || || || | ||| || || | |||
Sbjct 24043 TTATCCTGGATC-TTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGT 23985
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| || ||||| || | ||||| || || ||||||||
Sbjct 23984 AATAGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 23946
>seq672
Length=1102954
Score = 82.4 bits (90), Expect = 5e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| || | ||| |||| ||||| ||| || || ||||| |||||||| || || ||
Sbjct 391577 CCACCACGAAGTCGCAGCACCAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCCGAC 391636
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || | || || || || |||||||| || || | |||||| || || || ||
Sbjct 391637 AGAGTGCGGCCATCCTCCAGCTGCTTACCGGCGAAGATGAGACGCTGCTGATCTGGGGGA 391696
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659
| ||| ||||| || |||||| || | | || ||||| ||| ||
Sbjct 391697 ATTCCTTCCTTATCCTGAATCTTTGCCTTCACATTTTCGATCGTGTCCGAAGGCTCGACC 391756
Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
|| | || || || || ||||| | |||||||| ||||||||||||
Sbjct 391757 TCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCATG 391804
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314724260612336
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |