Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq628 163 2e-35 seq672 123 2e-23 seq575 122 8e-23 >seq628 Length=1452984 Score = 163 bits (180), Expect = 2e-35 Identities = 216/298 (72%), Gaps = 4/298 (1%) Strand=Plus/Plus Query 135476 TGGAACGCGGCACAACGGCAGCT--TAAGCGAGAAGGCAAAATGCACGGATTTATGCGCA 135533 |||||| |||| || | |||| | ||| ||| || ||||||||||| ||| | | | Sbjct 270539 TGGAACTCGGCCCAGCTGCAGATGGTAAAGGAG--GGTAAAATGCACGGCTTTCTAAGGA 270596 Query 135534 TGTATTGGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGAGGCGCTACAACACG 135593 |||| ||||| ||||||||| | || ||| | | |||| | || ||||| || | Sbjct 270597 TGTACTGGGCCAAAAAGATACTCGAGTGGACAAAAACGCCCGAGGAAGCGCTTGAAACGG 270656 Query 135594 CAATATTTTTTAATGATTACTACAGTTTAGATGGACGCGATTCAAATGGCTACGTAGGTT 135653 | || | | | || ||| |||||| | |||||||||||| | || || ||||| |||| Sbjct 270657 CCATCTATCTGAACGATCGGTACAGTCTGGATGGACGCGATCCGAACGGTTACGTCGGTT 270716 Query 135654 GTATGTGGTCTATTTGCGGTGTACACGATCAAGGATGGAAGGAGCGCAAAGTGTTTGGCA 135713 | |||||||| ||| || | |||||||| |||||||||||||| || | || |||| Sbjct 270717 GCATGTGGTCGATTGCGGGCATTCACGATCAGGGATGGAAGGAGCGTGAAATTTTCGGCA 270776 Query 135714 AGATTCGCTATATGAACTATGACGGTTGTACAAGAAAATTTAATGTAAATTTGTACGT 135771 | ||| | || ||||||||||| || || | | |||||||| || ||| || ||| Sbjct 270777 AAATTAGGTACATGAACTATGAAGGATGCAAGCGTAAATTTAACGTCAATGCGTTCGT 270834 >seq672 Length=1102954 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || ||||| || ||||||||| | || || ||||| || || || || Sbjct 391804 CATGCAGATTTTCGTGAAAACACTCACCGGCAAGACCATCACACTTGAGGTCGAGCCTTC 391745 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| |||| || | || || ||| ||||| || || ||||| || || || ||||| Sbjct 391744 GGACACGATCGAAAATGTGAAGGCAAAGATTCAGGATAAGGAAGGAATTCCCCCAGATCA 391685 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | |||||| || || |||| || | || | || || ||||| Sbjct 391684 GCAGCGTCTCATCTTCGCCGGTAAGCAGCTGGAGGATGGCCGCACTCTGTCGGACTACAA 391625 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||| ||||| || ||| | ||| |||| |||| | || ||||| Sbjct 391624 CATTCAGAAGGAATCTACCCTTCATCTGGTGCTGCGACTTCGTGGTGG 391577 >seq575 Length=281738 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || || || ||| ||||||| ||||| || || || || Sbjct 23946 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACTATTACCCTTGAGGTCGAGCCCTCG 24005 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || |||| |||| || || || || || || || || ||||| || || ||||| Sbjct 24006 GATACGATCGAGAATGTGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCGCCGGATCAG 24065 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | |||||| || || |||| || | || | || || || ||| Sbjct 24066 CAGCGTTTGATCTTCGCCGGTAAGCAGCTGGAGGATGGACGCACACTGTCTGACTATAAC 24125 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| |||||||||||| | ||| |||| | || |||| ||||| Sbjct 24126 ATTCAGAAGGAGTCGACCCTTCATCTGGTGCTTCGCCTGCGCGGTGG 24172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434910832419840