Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28]
1,392 sequences; 225,223,604 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq628 163 2e-35
seq672 123 2e-23
seq575 122 8e-23
>seq628
Length=1452984
Score = 163 bits (180), Expect = 2e-35
Identities = 216/298 (72%), Gaps = 4/298 (1%)
Strand=Plus/Plus
Query 135476 TGGAACGCGGCACAACGGCAGCT--TAAGCGAGAAGGCAAAATGCACGGATTTATGCGCA 135533
|||||| |||| || | |||| | ||| ||| || ||||||||||| ||| | | |
Sbjct 270539 TGGAACTCGGCCCAGCTGCAGATGGTAAAGGAG--GGTAAAATGCACGGCTTTCTAAGGA 270596
Query 135534 TGTATTGGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGAGGCGCTACAACACG 135593
|||| ||||| ||||||||| | || ||| | | |||| | || ||||| || |
Sbjct 270597 TGTACTGGGCCAAAAAGATACTCGAGTGGACAAAAACGCCCGAGGAAGCGCTTGAAACGG 270656
Query 135594 CAATATTTTTTAATGATTACTACAGTTTAGATGGACGCGATTCAAATGGCTACGTAGGTT 135653
| || | | | || ||| |||||| | |||||||||||| | || || ||||| ||||
Sbjct 270657 CCATCTATCTGAACGATCGGTACAGTCTGGATGGACGCGATCCGAACGGTTACGTCGGTT 270716
Query 135654 GTATGTGGTCTATTTGCGGTGTACACGATCAAGGATGGAAGGAGCGCAAAGTGTTTGGCA 135713
| |||||||| ||| || | |||||||| |||||||||||||| || | || ||||
Sbjct 270717 GCATGTGGTCGATTGCGGGCATTCACGATCAGGGATGGAAGGAGCGTGAAATTTTCGGCA 270776
Query 135714 AGATTCGCTATATGAACTATGACGGTTGTACAAGAAAATTTAATGTAAATTTGTACGT 135771
| ||| | || ||||||||||| || || | | |||||||| || ||| || |||
Sbjct 270777 AAATTAGGTACATGAACTATGAAGGATGCAAGCGTAAATTTAACGTCAATGCGTTCGT 270834
>seq672
Length=1102954
Score = 123 bits (136), Expect = 2e-23
Identities = 164/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
||||||||| || || ||||| || ||||||||| | || || ||||| || || || ||
Sbjct 391804 CATGCAGATTTTCGTGAAAACACTCACCGGCAAGACCATCACACTTGAGGTCGAGCCTTC 391745
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
||| |||| || | || || ||| ||||| || || ||||| || || || |||||
Sbjct 391744 GGACACGATCGAAAATGTGAAGGCAAAGATTCAGGATAAGGAAGGAATTCCCCCAGATCA 391685
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
|||||| | || | |||||| || || |||| || | || | || || |||||
Sbjct 391684 GCAGCGTCTCATCTTCGCCGGTAAGCAGCTGGAGGATGGCCGCACTCTGTCGGACTACAA 391625
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214
|||||| ||||| || ||| | ||| |||| |||| | || |||||
Sbjct 391624 CATTCAGAAGGAATCTACCCTTCATCTGGTGCTGCGACTTCGTGGTGG 391577
>seq575
Length=281738
Score = 122 bits (134), Expect = 8e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || ||||| || || || ||| ||||||| ||||| || || || ||
Sbjct 23946 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACTATTACCCTTGAGGTCGAGCCCTCG 24005
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| |||| |||| || || || || || || || || ||||| || || |||||
Sbjct 24006 GATACGATCGAGAATGTGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCGCCGGATCAG 24065
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|||||||| || | |||||| || || |||| || | || | || || || |||
Sbjct 24066 CAGCGTTTGATCTTCGCCGGTAAGCAGCTGGAGGATGGACGCACACTGTCTGACTATAAC 24125
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214
||||| |||||||||||| | ||| |||| | || |||| |||||
Sbjct 24126 ATTCAGAAGGAGTCGACCCTTCATCTGGTGCTTCGCCTGCGCGGTGG 24172
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434910832419840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |