Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq497 89.7 5e-13 >seq497 Length=402095 Score = 89.7 bits (98), Expect = 5e-13 Identities = 223/336 (66%), Gaps = 2/336 (1%) Strand=Plus/Plus Query 34394 GGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGG 34453 || ||||| || || || || || || |||||| | |||||||| || | || Sbjct 123925 GGTGACTTAGGTCCAGTTTATGGCTTTCAGTGGCGTCACTTTGGTGCAAAATACAAAACA 123984 Query 34454 AGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTG-CAGTACGTGATCGACACCTT 34512 || | | || || | ||||||||| |||||| || ||| | ||||| ||| | Sbjct 123985 TGCCACGACGATTACACAGGACAGGGAATCGACCAGTTGGCAGAA-GTGATACACAAAAT 124043 Query 34513 GAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCC 34572 || || ||| | || | | ||| | ||| |||| ||||| || ||| | || Sbjct 124044 AAAAAACAATCCTTACGATCGTCGAATCATCATGAGCGCTTGGAATCCTTCCGATATTCC 124103 Query 34573 TCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCT 34632 ||||| | || ||||| ||| | | || || | || | ||||| ||| | Sbjct 124104 CAACATGGCCTTACCGCCGTGTCACTGCTTGGCACAGTTTTTTGTTGGCAATGGAGAGTT 124163 Query 34633 GTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGC 34692 ||| |||||| | ||||| ||||||| || | || || || || ||||| |||||||| Sbjct 124164 GTCTTGCCAGATGTATCAGCGATCGGCTGATGTAGGATTGGGTGTTCCGTTTAACATTGC 124223 Query 34693 TAGTTACGCTCTGCTCACGTACATGATCGCTCATGT 34728 ||| ||| || |||| || | |||||||| ||||| Sbjct 124224 TAGCTACTCTTTGCTGACCCATATGATCGCCCATGT 124259 Score = 89.7 bits (98), Expect = 5e-13 Identities = 223/336 (66%), Gaps = 2/336 (1%) Strand=Plus/Minus Query 6617 ACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAAC 6676 ||||| |||||||| | || |||| || ||| ||||||||||| ||||| || || || Sbjct 124259 ACATGGGCGATCATATGGGTCAGCAAAGAGTAGCTAGCAATGTTAAACGGAACACCCAAT 124200 Query 6677 CCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAAT 6736 || | || ||||||| ||||| | |||||| |||| ||| ||||| | || | || Sbjct 124199 CCTACATCAGCCGATCGCTGATACATCTGGCAAGACAACTCTCCATTGCCAACAAAAAAC 124140 Query 6737 TGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCG 6796 || | | ||| ||||| || | ||||| || | ||| || ||||| ||| Sbjct 124139 TGTGCCAAGCAGTGACACGGCGGTAAGGCCATGTTGGGAATATCGGAAGGATTCCAAGCG 124080 Query 6797 CACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTG-CAG 6855 | ||| | ||| | | || | ||| || || | ||| ||||| | ||| || Sbjct 124079 CTCATGATGATTCGACGATCGTAAGGATTGTTTTTTATTTTGTGTATCAC-TTCTGCCAA 124021 Query 6856 CTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTG 6915 |||||| ||||||||| | || || | | || || | || |||||||| Sbjct 124020 CTGGTCGATTCCCTGTCCTGTGTAATCGTCGTGGCATGTTTTGTATTTTGCACCAAAGTG 123961 Query 6916 TCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCC 6951 | |||||| || || || || || || ||||| || Sbjct 123960 ACGCCACTGAAAGCCATAAACTGGACCTAAGTCACC 123925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448254600234240