Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28]
1,392 sequences; 225,223,604 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq497 89.7 5e-13
>seq497
Length=402095
Score = 89.7 bits (98), Expect = 5e-13
Identities = 223/336 (66%), Gaps = 2/336 (1%)
Strand=Plus/Plus
Query 34394 GGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGG 34453
|| ||||| || || || || || || |||||| | |||||||| || | ||
Sbjct 123925 GGTGACTTAGGTCCAGTTTATGGCTTTCAGTGGCGTCACTTTGGTGCAAAATACAAAACA 123984
Query 34454 AGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTG-CAGTACGTGATCGACACCTT 34512
|| | | || || | ||||||||| |||||| || ||| | ||||| ||| |
Sbjct 123985 TGCCACGACGATTACACAGGACAGGGAATCGACCAGTTGGCAGAA-GTGATACACAAAAT 124043
Query 34513 GAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCC 34572
|| || ||| | || | | ||| | ||| |||| ||||| || ||| | ||
Sbjct 124044 AAAAAACAATCCTTACGATCGTCGAATCATCATGAGCGCTTGGAATCCTTCCGATATTCC 124103
Query 34573 TCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCT 34632
||||| | || ||||| ||| | | || || | || | ||||| ||| |
Sbjct 124104 CAACATGGCCTTACCGCCGTGTCACTGCTTGGCACAGTTTTTTGTTGGCAATGGAGAGTT 124163
Query 34633 GTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGC 34692
||| |||||| | ||||| ||||||| || | || || || || ||||| ||||||||
Sbjct 124164 GTCTTGCCAGATGTATCAGCGATCGGCTGATGTAGGATTGGGTGTTCCGTTTAACATTGC 124223
Query 34693 TAGTTACGCTCTGCTCACGTACATGATCGCTCATGT 34728
||| ||| || |||| || | |||||||| |||||
Sbjct 124224 TAGCTACTCTTTGCTGACCCATATGATCGCCCATGT 124259
Score = 89.7 bits (98), Expect = 5e-13
Identities = 223/336 (66%), Gaps = 2/336 (1%)
Strand=Plus/Minus
Query 6617 ACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAAC 6676
||||| |||||||| | || |||| || ||| ||||||||||| ||||| || || ||
Sbjct 124259 ACATGGGCGATCATATGGGTCAGCAAAGAGTAGCTAGCAATGTTAAACGGAACACCCAAT 124200
Query 6677 CCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAAT 6736
|| | || ||||||| ||||| | |||||| |||| ||| ||||| | || | ||
Sbjct 124199 CCTACATCAGCCGATCGCTGATACATCTGGCAAGACAACTCTCCATTGCCAACAAAAAAC 124140
Query 6737 TGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCG 6796
|| | | ||| ||||| || | ||||| || | ||| || ||||| |||
Sbjct 124139 TGTGCCAAGCAGTGACACGGCGGTAAGGCCATGTTGGGAATATCGGAAGGATTCCAAGCG 124080
Query 6797 CACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTG-CAG 6855
| ||| | ||| | | || | ||| || || | ||| ||||| | ||| ||
Sbjct 124079 CTCATGATGATTCGACGATCGTAAGGATTGTTTTTTATTTTGTGTATCAC-TTCTGCCAA 124021
Query 6856 CTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTG 6915
|||||| ||||||||| | || || | | || || | || ||||||||
Sbjct 124020 CTGGTCGATTCCCTGTCCTGTGTAATCGTCGTGGCATGTTTTGTATTTTGCACCAAAGTG 123961
Query 6916 TCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCC 6951
| |||||| || || || || || || ||||| ||
Sbjct 123960 ACGCCACTGAAAGCCATAAACTGGACCTAAGTCACC 123925
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448254600234240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |