Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq872 370 1e-97 seq628 109 8e-19 >seq872 Length=887634 Score = 370 bits (410), Expect = 1e-97 Identities = 1199/1848 (65%), Gaps = 20/1848 (1%) Strand=Plus/Plus Query 76803 GCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAA 76862 || ||||| || || || |||||||| || || ||||| |||| |||| |||||||| Sbjct 220970 GCCGGTTTGGTGCGCAGGTAGTACATGCCCGTCTTTAGTCCCATCTTCCACGCGTAGAAA 221029 Query 76863 TGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTT 76922 || || ||||| ||| ||| | || ||||| | || || || | || || Sbjct 221030 TGGATCGACGTCAGCTTGCCATAGTTCGGCTCGGCCACGTGTATGTTAAATGATTGTGAC 221089 Query 76923 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAG-GA-ATTT 76980 |||||||| || ||||| | ||| ||||||||||| || | | |||| | || || | Sbjct 221090 TGATCGATAAACGCTCCCCGATCGGCCGCCATTTTGATG--GATGTTTTCACCGAGATCT 221147 Query 76981 CCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAG-GTTTGTAT--TTTGAATGG 77037 |||| | || ||| | | | ||| || | ||| | | || || ||||||| | Sbjct 221148 CCCATACCGTCTTGTACAGGTCGCGGATTTCCTTTGGTATTGATTCAATGTTTTGAATCG 221207 Query 77038 AACCACCATCTGATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTA 77097 | || | || | || | ||||| || ||| || |||||| | || |||||| Sbjct 221208 ATCCGTTGTTGGACAAGATGTTGTTCTTCATGTCAAGATCCCACAAACCCATCGCTGTTA 221267 Query 77098 AAACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGT 77157 | || || |||||| | || || | || || || || || | || | || ||| Sbjct 221268 GATCTTGCAGCAGATGATGGTTCACCACCTGGAACTCGCCCGATAGCACACGTCGGTTGT 221327 Query 77158 AAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAG 77217 ||| || || || || || | || |||||||| ||||| ||||| || || |||| Sbjct 221328 AAACGTTCGACGTGTACGGCTCGAAGGACTCATTGTTGCCCAATATTTGTGCCGTCGAAG 221387 Query 77218 CAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTT 77277 | || ||||| ||||||| || || || | | ||| || || || || || | Sbjct 221388 CTGTCGGCATCGGTGCCAGCAGTAGCGAGTTACGAATACCGTGCTTTGCAATCTTCTCCT 221447 Query 77278 TTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAA 77337 | | | | |||| | ||| ||||| | ||| | | ||| | ||||| ||||| | Sbjct 221448 TCAACTCTGTCCAGTTCCACAGATCCGTCGGTTCTTTGTTCCACATTTCGTACTGTAGGA 221507 Query 77338 TTCCGTTACTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTT 77397 || || || | | || | ||| || || || || || || | |||| | || Sbjct 221508 CACCCTTGCTCACTGGACAACCTTCATACGTCTCGTATGGACCGTCCCGTGCAGCCAATT 221567 Query 77398 CACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTT 77457 | || || ||||||| |||||| || || || ||||| || || | | ||| || | || Sbjct 221568 CGCAGCTTGCTTCCAGTGCTCCATAGTAGATGGTTTCAAATATTTGTTGATTCAGCTTTT 221627 Query 77458 GTGCTTCAATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAA 77517 | || || || || | ||||| | | | ||| || ||||| || | ||||| | Sbjct 221628 GGGCCTCTTCGCTTTCGTATGGATAGCGCATTAAAATGAACGCATCGGCCATGCCCTGCA 221687 Query 77518 CTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAAT 77577 | || ||||| || || || || | | | |||||| || || || || | ||||| | Sbjct 221688 CACCGATACCGATGGGCCTGTGGCGCATGTTGGAACGCTTCGCCTCCGGCACCGGATAGT 221747 Query 77578 AATTAATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTT 77637 | || ||||| || ||||| || ||||| | |||| || | || ||||| || | Sbjct 221748 AGTTTATGTCGATGATTTTGTTCAGATTGCGTGTTACTATCTTGGCGACATCCTTCAGCT 221807 Query 77638 TAAGAAAATCAAATCTTCCATC---TATAACAAACATGTTCAAAGCTATAGATGCTAGAT 77694 | | ||||| | | | ||| | | || |||||||||| || || || || |||| Sbjct 221808 TTACGAAATCGTACGTCCTATCGGATTTTACGAACATGTTCAGTGCGATCGAGGCCAGAT 221867 Query 77695 TACAAACTGCTACCTCATTAGCGTTGGCA--TATTGTATTATCTCGGTACATAGATTACT 77752 | ||||| || | |||| | | | | || | | ||||| || || | ||| Sbjct 221868 TGCAAACCGCAATTTCATC--CTTCGACGAGTACTCCACAATCTCAGTGCACAAGTTAGA 221925 Query 77753 ACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAG 77812 ||| || || ||||| | || || |||||||| || ||||||| ||||| || || Sbjct 221926 ACACTTAATGGTGCCAATGTTCTGCTGGTTGCTTTTGCGGTTGCATGCATCCTTGTACAG 221985 Query 77813 AATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGC 77872 ||| |||| || ||||| | ||| ||||| || || | ||| | | || Sbjct 221986 CATATACGGTACGCCCGTTTCCACCTGCGATTCAATGATCGCGAACCACAAATCCTGTGC 222045 Query 77873 TTTTATCATAGATTTGTATCGCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTC 77932 || | | | | || | |||| | || || ||| || || || || | Sbjct 222046 CTTCACCTGGCGAATAAAACGACCCTCTTTCTCGTAGCCAGTGTACAGTGCCTCGAACTT 222105 Query 77933 ATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACC 77992 || ||||| |||| ||| || || || || | |||||||| | ||| | Sbjct 222106 TTCACCCCAGCTATCAGACAAACCGGGACAATCGTGAGGGCACATTAGACTCCACATTTC 222165 Query 77993 ATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCG 78052 | ||| || || | ||| || ||||| || ||||| | || |||| | || ||| Sbjct 222166 GTTCGCCTCCACCCGCTCCATGAACAGATCCGGAATCCACAAGGCG-TAAA-ACATGTCG 222223 Query 78053 GGTTCTATGT---TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATC 78109 || | | | || || || || || || || || ||||| |||||||| | | ||| Sbjct 222224 CGTGC-ACGCACCTCCTCTTTGCCGGTGTTTTTCTTCAGATCCAGAAACTCGAACACATC 222282 Query 78110 AGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATC 78169 | ||||| ||||| || || || || | | |||| || || || || || |||||||| Sbjct 222283 ACCGTGCCACGGTTCGAGGTAGATGGCAAAAGCTCCCGGGCGCTTGTTGCCACCCTGATC 222342 Query 78170 TATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCC 78229 | |||| ||| || || || || || | || |||||| | | ||||| || |||| Sbjct 222343 CACGTATCGGGCCGTATTGTTGTACACGCGCAGCATTGGCACCAACCCGTTTGAAATTCC 222402 Query 78230 ATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCC 78289 ||| || || || || || | || | ||||||||| | | | ||| ||||| Sbjct 222403 ATTCGTGCCCGAGATGTACGTACCTTTCGCGCGAATACAGTGCACGTTCAGCCCAATTCC 222462 Query 78290 TCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACT 78349 || || || || || || || || | |||| |||||||||||||| || || || Sbjct 222463 GCCAGCAGATTTTGAAATCAGTGCACACTGCTTCAGCGTATCGTAGATACCTTCAATGCT 222522 Query 78350 GTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATT 78409 ||| ||| |||| | || | |||||| |||| || || | || | || Sbjct 222523 GTCGTCCGACATGGTGAGCAAGAAACAGGACGACAACTGCGGACGTTGCGTAGCCGCCGC 222582 Query 78410 AAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAAT 78469 ||| | ||||| || ||||| ||||| | || ||||| |||||||| || || || Sbjct 222583 AAACATGGTCGGTGAGGCATGGGTAAAGTAGCGCTCCGAAAGCAGATTGTAAGTCTCGAT 222642 Query 78470 AGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGG 78529 |||| || ||||| |||||| || | ||| || ||||||||||||||||| || Sbjct 222643 TGCTGCATCGATGTCTTCACCATGAATGCCGATCGCAACGCGCATCAACATATGCTGCGG 222702 Query 78530 TCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACC 78589 || ||||| |||| || || ||||||||||| || || |||||||| || || Sbjct 222703 TCGCTCAACGATCTTGCCCTTGATCTTCAACAAGTAGGACCGCTCTAAAGTTTTGAAGCC 222762 Query 78590 AAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAATAACAGAATTTAG 78637 ||||||||||| ||| || | || ||||| ||| | ||||| || Sbjct 222763 GAAATAGTTGTACCCAAAATCGCGATCATAAATTATAGCCGAATTCAG 222810 >seq628 Length=1452984 Score = 109 bits (120), Expect = 8e-19 Identities = 185/263 (70%), Gaps = 9/263 (3%) Strand=Plus/Plus Query 48129 TTAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTA 48188 |||||||| | || ||||| ||||| || || |||||||| | ||| | ||||| Sbjct 708174 TTAAACATCAGGCAGGCAAAGTCACAGTGTAGTCCTTCATCACGCGAAATCAGCTCGTTC 708233 Query 48189 GAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT 48248 || || || || || ||||| |||||||| || || ||||| || || || || |||| | Sbjct 708234 GAGAAGGTAAGTCCCGGCATCAGTCCACGCTTCTTCAGCCAGAAAATGGCGGC-AAAGCT 708292 Query 48249 CCAGAA-AAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGC 48307 | | ||||| || ||||| || || ||||| ||| | | ||| || | | || Sbjct 708293 ACCGCTGAAGAAGATACCTTCGACAGCAGCAAACGCGACGACACGCTCGCCAAAGTTTGC 708352 Query 48308 TTCGTTGTGT---ATCCACCGTT--GTGCCCAATCAGCCTTCTTCTTTACACAAGGCATT 48362 | ||| | ||||| ||| |||||||||| ||||||||||| || || |||| Sbjct 708353 CTTCTTGCTTGAGATCCA--GTTCAGTGCCCAATCGGCCTTCTTCTTCACGCACGGCAGC 708410 Query 48363 GTTTCTATAGCATTAAAGAGAAA 48385 ||||| || ||||| || || || Sbjct 708411 GTTTCAATTGCATTGAACAGGAA 708433 Score = 84.2 bits (92), Expect = 3e-11 Identities = 162/239 (68%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 48432 TACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCT 48491 ||||| ||| ||| | |||||| || || || ||||| ||||||||||| | ||||| Sbjct 708554 TACATCTCGCTGTGCACATTTTCCATCGCTATTTGAAAGCCGTAAAAACAGCGAGCTTCC 708613 Query 48492 GTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTA 48551 || | |||||||||| | || ||||| ||| || || || || || ||||| Sbjct 708614 GTTACCTGTACCTCCTGGCTGAAACGTTCGACCAGGTTTTCGTTCACGATGCCATCGGAT 708673 Query 48552 GCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTC 48611 || ||||| || || | ||| || ||||| | |||| | | ||| || | Sbjct 708674 GCGGCAAAGAAGGCAAGTACGTGCGAGATAAAGTGGCGTTCGCTCGGTTTCAACGAATCC 708733 Query 48612 CAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGC 48670 ||||| || || || || || | ||| || ||||| | ||||| || || || || || Sbjct 708734 CAGTCTTTCATGTCCTTGGACAGATCCACCTCTTCCACGGTCCAGAACGAAGCTTCCGC 708792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694656712762880