Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28]
1,392 sequences; 225,223,604 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq872 370 1e-97
seq628 109 8e-19
>seq872
Length=887634
Score = 370 bits (410), Expect = 1e-97
Identities = 1199/1848 (65%), Gaps = 20/1848 (1%)
Strand=Plus/Plus
Query 76803 GCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAA 76862
|| ||||| || || || |||||||| || || ||||| |||| |||| ||||||||
Sbjct 220970 GCCGGTTTGGTGCGCAGGTAGTACATGCCCGTCTTTAGTCCCATCTTCCACGCGTAGAAA 221029
Query 76863 TGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTT 76922
|| || ||||| ||| ||| | || ||||| | || || || | || ||
Sbjct 221030 TGGATCGACGTCAGCTTGCCATAGTTCGGCTCGGCCACGTGTATGTTAAATGATTGTGAC 221089
Query 76923 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAG-GA-ATTT 76980
|||||||| || ||||| | ||| ||||||||||| || | | |||| | || || |
Sbjct 221090 TGATCGATAAACGCTCCCCGATCGGCCGCCATTTTGATG--GATGTTTTCACCGAGATCT 221147
Query 76981 CCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAG-GTTTGTAT--TTTGAATGG 77037
|||| | || ||| | | | ||| || | ||| | | || || ||||||| |
Sbjct 221148 CCCATACCGTCTTGTACAGGTCGCGGATTTCCTTTGGTATTGATTCAATGTTTTGAATCG 221207
Query 77038 AACCACCATCTGATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTA 77097
| || | || | || | ||||| || ||| || |||||| | || ||||||
Sbjct 221208 ATCCGTTGTTGGACAAGATGTTGTTCTTCATGTCAAGATCCCACAAACCCATCGCTGTTA 221267
Query 77098 AAACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGT 77157
| || || |||||| | || || | || || || || || | || | || |||
Sbjct 221268 GATCTTGCAGCAGATGATGGTTCACCACCTGGAACTCGCCCGATAGCACACGTCGGTTGT 221327
Query 77158 AAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAG 77217
||| || || || || || | || |||||||| ||||| ||||| || || ||||
Sbjct 221328 AAACGTTCGACGTGTACGGCTCGAAGGACTCATTGTTGCCCAATATTTGTGCCGTCGAAG 221387
Query 77218 CAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTT 77277
| || ||||| ||||||| || || || | | ||| || || || || || |
Sbjct 221388 CTGTCGGCATCGGTGCCAGCAGTAGCGAGTTACGAATACCGTGCTTTGCAATCTTCTCCT 221447
Query 77278 TTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAA 77337
| | | | |||| | ||| ||||| | ||| | | ||| | ||||| ||||| |
Sbjct 221448 TCAACTCTGTCCAGTTCCACAGATCCGTCGGTTCTTTGTTCCACATTTCGTACTGTAGGA 221507
Query 77338 TTCCGTTACTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTT 77397
|| || || | | || | ||| || || || || || || | |||| | ||
Sbjct 221508 CACCCTTGCTCACTGGACAACCTTCATACGTCTCGTATGGACCGTCCCGTGCAGCCAATT 221567
Query 77398 CACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTT 77457
| || || ||||||| |||||| || || || ||||| || || | | ||| || | ||
Sbjct 221568 CGCAGCTTGCTTCCAGTGCTCCATAGTAGATGGTTTCAAATATTTGTTGATTCAGCTTTT 221627
Query 77458 GTGCTTCAATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAA 77517
| || || || || | ||||| | | | ||| || ||||| || | ||||| |
Sbjct 221628 GGGCCTCTTCGCTTTCGTATGGATAGCGCATTAAAATGAACGCATCGGCCATGCCCTGCA 221687
Query 77518 CTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAAT 77577
| || ||||| || || || || | | | |||||| || || || || | ||||| |
Sbjct 221688 CACCGATACCGATGGGCCTGTGGCGCATGTTGGAACGCTTCGCCTCCGGCACCGGATAGT 221747
Query 77578 AATTAATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTT 77637
| || ||||| || ||||| || ||||| | |||| || | || ||||| || |
Sbjct 221748 AGTTTATGTCGATGATTTTGTTCAGATTGCGTGTTACTATCTTGGCGACATCCTTCAGCT 221807
Query 77638 TAAGAAAATCAAATCTTCCATC---TATAACAAACATGTTCAAAGCTATAGATGCTAGAT 77694
| | ||||| | | | ||| | | || |||||||||| || || || || ||||
Sbjct 221808 TTACGAAATCGTACGTCCTATCGGATTTTACGAACATGTTCAGTGCGATCGAGGCCAGAT 221867
Query 77695 TACAAACTGCTACCTCATTAGCGTTGGCA--TATTGTATTATCTCGGTACATAGATTACT 77752
| ||||| || | |||| | | | | || | | ||||| || || | |||
Sbjct 221868 TGCAAACCGCAATTTCATC--CTTCGACGAGTACTCCACAATCTCAGTGCACAAGTTAGA 221925
Query 77753 ACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAG 77812
||| || || ||||| | || || |||||||| || ||||||| ||||| || ||
Sbjct 221926 ACACTTAATGGTGCCAATGTTCTGCTGGTTGCTTTTGCGGTTGCATGCATCCTTGTACAG 221985
Query 77813 AATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGC 77872
||| |||| || ||||| | ||| ||||| || || | ||| | | ||
Sbjct 221986 CATATACGGTACGCCCGTTTCCACCTGCGATTCAATGATCGCGAACCACAAATCCTGTGC 222045
Query 77873 TTTTATCATAGATTTGTATCGCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTC 77932
|| | | | | || | |||| | || || ||| || || || || |
Sbjct 222046 CTTCACCTGGCGAATAAAACGACCCTCTTTCTCGTAGCCAGTGTACAGTGCCTCGAACTT 222105
Query 77933 ATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACC 77992
|| ||||| |||| ||| || || || || | |||||||| | ||| |
Sbjct 222106 TTCACCCCAGCTATCAGACAAACCGGGACAATCGTGAGGGCACATTAGACTCCACATTTC 222165
Query 77993 ATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCG 78052
| ||| || || | ||| || ||||| || ||||| | || |||| | || |||
Sbjct 222166 GTTCGCCTCCACCCGCTCCATGAACAGATCCGGAATCCACAAGGCG-TAAA-ACATGTCG 222223
Query 78053 GGTTCTATGT---TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATC 78109
|| | | | || || || || || || || || ||||| |||||||| | | |||
Sbjct 222224 CGTGC-ACGCACCTCCTCTTTGCCGGTGTTTTTCTTCAGATCCAGAAACTCGAACACATC 222282
Query 78110 AGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATC 78169
| ||||| ||||| || || || || | | |||| || || || || || ||||||||
Sbjct 222283 ACCGTGCCACGGTTCGAGGTAGATGGCAAAAGCTCCCGGGCGCTTGTTGCCACCCTGATC 222342
Query 78170 TATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCC 78229
| |||| ||| || || || || || | || |||||| | | ||||| || ||||
Sbjct 222343 CACGTATCGGGCCGTATTGTTGTACACGCGCAGCATTGGCACCAACCCGTTTGAAATTCC 222402
Query 78230 ATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCC 78289
||| || || || || || | || | ||||||||| | | | ||| |||||
Sbjct 222403 ATTCGTGCCCGAGATGTACGTACCTTTCGCGCGAATACAGTGCACGTTCAGCCCAATTCC 222462
Query 78290 TCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACT 78349
|| || || || || || || || | |||| |||||||||||||| || || ||
Sbjct 222463 GCCAGCAGATTTTGAAATCAGTGCACACTGCTTCAGCGTATCGTAGATACCTTCAATGCT 222522
Query 78350 GTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATT 78409
||| ||| |||| | || | |||||| |||| || || | || | ||
Sbjct 222523 GTCGTCCGACATGGTGAGCAAGAAACAGGACGACAACTGCGGACGTTGCGTAGCCGCCGC 222582
Query 78410 AAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAAT 78469
||| | ||||| || ||||| ||||| | || ||||| |||||||| || || ||
Sbjct 222583 AAACATGGTCGGTGAGGCATGGGTAAAGTAGCGCTCCGAAAGCAGATTGTAAGTCTCGAT 222642
Query 78470 AGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGG 78529
|||| || ||||| |||||| || | ||| || ||||||||||||||||| ||
Sbjct 222643 TGCTGCATCGATGTCTTCACCATGAATGCCGATCGCAACGCGCATCAACATATGCTGCGG 222702
Query 78530 TCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACC 78589
|| ||||| |||| || || ||||||||||| || || |||||||| || ||
Sbjct 222703 TCGCTCAACGATCTTGCCCTTGATCTTCAACAAGTAGGACCGCTCTAAAGTTTTGAAGCC 222762
Query 78590 AAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAATAACAGAATTTAG 78637
||||||||||| ||| || | || ||||| ||| | ||||| ||
Sbjct 222763 GAAATAGTTGTACCCAAAATCGCGATCATAAATTATAGCCGAATTCAG 222810
>seq628
Length=1452984
Score = 109 bits (120), Expect = 8e-19
Identities = 185/263 (70%), Gaps = 9/263 (3%)
Strand=Plus/Plus
Query 48129 TTAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTA 48188
|||||||| | || ||||| ||||| || || |||||||| | ||| | |||||
Sbjct 708174 TTAAACATCAGGCAGGCAAAGTCACAGTGTAGTCCTTCATCACGCGAAATCAGCTCGTTC 708233
Query 48189 GAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT 48248
|| || || || || ||||| |||||||| || || ||||| || || || || |||| |
Sbjct 708234 GAGAAGGTAAGTCCCGGCATCAGTCCACGCTTCTTCAGCCAGAAAATGGCGGC-AAAGCT 708292
Query 48249 CCAGAA-AAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGC 48307
| | ||||| || ||||| || || ||||| ||| | | ||| || | | ||
Sbjct 708293 ACCGCTGAAGAAGATACCTTCGACAGCAGCAAACGCGACGACACGCTCGCCAAAGTTTGC 708352
Query 48308 TTCGTTGTGT---ATCCACCGTT--GTGCCCAATCAGCCTTCTTCTTTACACAAGGCATT 48362
| ||| | ||||| ||| |||||||||| ||||||||||| || || ||||
Sbjct 708353 CTTCTTGCTTGAGATCCA--GTTCAGTGCCCAATCGGCCTTCTTCTTCACGCACGGCAGC 708410
Query 48363 GTTTCTATAGCATTAAAGAGAAA 48385
||||| || ||||| || || ||
Sbjct 708411 GTTTCAATTGCATTGAACAGGAA 708433
Score = 84.2 bits (92), Expect = 3e-11
Identities = 162/239 (68%), Gaps = 0/239 (0%)
Strand=Plus/Plus
Query 48432 TACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCT 48491
||||| ||| ||| | |||||| || || || ||||| ||||||||||| | |||||
Sbjct 708554 TACATCTCGCTGTGCACATTTTCCATCGCTATTTGAAAGCCGTAAAAACAGCGAGCTTCC 708613
Query 48492 GTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTA 48551
|| | |||||||||| | || ||||| ||| || || || || || |||||
Sbjct 708614 GTTACCTGTACCTCCTGGCTGAAACGTTCGACCAGGTTTTCGTTCACGATGCCATCGGAT 708673
Query 48552 GCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTC 48611
|| ||||| || || | ||| || ||||| | |||| | | ||| || |
Sbjct 708674 GCGGCAAAGAAGGCAAGTACGTGCGAGATAAAGTGGCGTTCGCTCGGTTTCAACGAATCC 708733
Query 48612 CAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGC 48670
||||| || || || || || | ||| || ||||| | ||||| || || || || ||
Sbjct 708734 CAGTCTTTCATGTCCTTGGACAGATCCACCTCTTCCACGGTCCAGAACGAAGCTTCCGC 708792
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694656712762880
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