Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq872 340 3e-88 seq628 118 2e-21 >seq872 Length=887634 Score = 340 bits (376), Expect = 3e-88 Identities = 1199/1852 (65%), Gaps = 28/1852 (2%) Strand=Plus/Plus Query 75398 GCTGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAA 75457 || ||||| || || || |||||||| || || ||||| |||| |||| |||||||| Sbjct 220970 GCCGGTTTGGTGCGCAGGTAGTACATGCCCGTCTTTAGTCCCATCTTCCACGCGTAGAAA 221029 Query 75458 TGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATATTCATCGACTGACTT 75517 || || || || ||| ||| |||| ||||| | || || || | || || Sbjct 221030 TGGATCGACGTCAGCTTGCCATAGTTCGGCTCGGCCACGTGTATGTTAAATGATTGTGAC 221089 Query 75518 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAG-GA-ATTT 75575 |||||||| || ||||| | ||| ||||||||||| || | | |||| | || || | Sbjct 221090 TGATCGATAAACGCTCCCCGATCGGCCGCCATTTTGATG--GATGTTTTCACCGAGATCT 221147 Query 75576 CCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA--GATTTG-TATTTTGAATGG 75632 |||| | || ||| | | | ||| || | ||| | |||| | |||||||| | Sbjct 221148 CCCATACCGTCTTGTACAGGTCGCGGATTTCCTTTGGTATTGATTCAATGTTTTGAATCG 221207 Query 75633 ATCCGCCATCAGATATAATTGTATTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTA 75692 ||||| | || | || | ||||| || ||| || |||||| || | |||| Sbjct 221208 ATCCGTTGTTGGACAAGATGTTGTTCTTCATGTCAAGATCCCACAAACCCATCGCTGTTA 221267 Query 75693 AAACTCTAAGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGT 75752 | || || |||||| | || || | || || || || || | || | ||| ||| Sbjct 221268 GATCTTGCAGCAGATGATGGTTCACCACCTGGAACTCGCCCGATAGCACACGTCGGTTGT 221327 Query 75753 AAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAG 75812 ||| || || || || || | || |||||||| ||||| ||||| || || |||| Sbjct 221328 AAACGTTCGACGTGTACGGCTCGAAGGACTCATTGTTGCCCAATATTTGTGCCGTCGAAG 221387 Query 75813 CAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTT 75872 | |||||||| ||||||| || || || | | ||| || || || || || | Sbjct 221388 CTGTCGGCATCGGTGCCAGCAGTAGCGAGTTACGAATACCGTGCTTTGCAATCTTCTCCT 221447 Query 75873 TTAGATATTTCCAATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAA 75932 | | | | |||| | ||| ||||| | ||| | | ||| | ||||| ||||| | Sbjct 221448 TCAACTCTGTCCAGTTCCACAGATCCGTCGGTTCTTTGTTCCACATTTCGTACTGTAGGA 221507 Query 75933 TTCCGTTGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTT 75992 || ||||| | | || | ||| || ||||| | |||||| | |||| | || Sbjct 221508 CACCCTTGCTCACTGGACAACCTTCATACGTCTCGTATGGACCGTCCCGTGCAGCCAATT 221567 Query 75993 CGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTT 76052 |||| || || || | || || || || || ||||| || || | | ||| || | || Sbjct 221568 CGCAGCTTGCTTCCAGTGCTCCATAGTAGATGGTTTCAAATATTTGTTGATTCAGCTTTT 221627 Query 76053 GCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAA 76112 | || || || || | ||||| | | | ||| || ||||| || | ||||| | Sbjct 221628 GGGCCTCTTCGCTTTCGTATGGATAGCGCATTAAAATGAACGCATCGGCCATGCCCTGCA 221687 Query 76113 CTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAAT 76172 | || ||||| || || || || | | | |||||| | || || || | || || | Sbjct 221688 CACCGATACCGATGGGCCTGTGGCGCATGTTGGAACGCTTCGCCTCCGGCACCGGATAGT 221747 Query 76173 AATTAATATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTT 76232 | || || || || ||||| || ||||| | |||| || | || ||||| || | Sbjct 221748 AGTTTATGTCGATGATTTTGTTCAGATTGCGTGTTACTATCTTGGCGACATCCTTCAGCT 221807 Query 76233 TGAGAAAATCAAATTTTCCATC---TATCACAAACATATTAAGAGCTATAGATGCTAGAT 76289 | | ||||| | | | ||| | | || ||||| || || || || || || |||| Sbjct 221808 TTACGAAATCGTACGTCCTATCGGATTTTACGAACATGTTCAGTGCGATCGAGGCCAGAT 221867 Query 76290 TACAAACGGCTACCTCATTAGCATTGGCA--TATTGTATTATCTCCGTGCATAGATTACT 76347 | ||||| || | |||| | | | | || | | ||||| ||||| | ||| Sbjct 221868 TGCAAACCGCAATTTCATC--CTTCGACGAGTACTCCACAATCTCAGTGCACAAGTTAGA 221925 Query 76348 ACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAG 76407 |||||| || || |||| || || |||||||| || ||| |||| ||||| || || Sbjct 221926 ACACTTAATGGTGCCAATGTTCTGCTGGTTGCTTTTGCGGTTGCATGCATCCTTGTACAG 221985 Query 76408 AACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGC 76467 | | |||| || ||||| | ||| ||||| || || | ||| | | || Sbjct 221986 CATATACGGTACGCCCGTTTCCACCTGCGATTCAATGATCGCGAACCACAAATCCTGTGC 222045 Query 76468 TTTTAT-TATAGATTTGTATCGCTTCTCTCTTTCATATT--GTGTATATAACCGTTCAAA 76524 || | | || | | || |||| | || || ||||| | || || || Sbjct 222046 CTTCACCTGGCGAATAAAA-CGACCCTCTTTCTCGTAGCCAGTGTACAGTGCC--TCGAA 222102 Query 76525 TTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTC 76584 | || ||||| |||| |||||| ||||| || | || ||||| | |||| Sbjct 222103 CTTTTCACCCCAGCTATCAGACAAACCGGGACAATCGTGAGGGCACATTAGACTCCACAT 222162 Query 76585 ACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATC 76644 | | ||| ||||| | ||| || ||||| || ||||| | || |||| | || Sbjct 222163 TTCGTTCGCCTCCACCCGCTCCATGAACAGATCCGGAATCCACAAGGCG-TAAA-ACATG 222220 Query 76645 TCGGGTTCTACGT---TCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAAT 76701 ||| || | ||| || || || || || || || || ||||| || ||||| | | Sbjct 222221 TCGCGTGC-ACGCACCTCCTCTTTGCCGGTGTTTTTCTTCAGATCCAGAAACTCGAACAC 222279 Query 76702 ATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTG 76761 |||| ||||| ||||| || || || || | | | ||||| || || || || ||||| Sbjct 222280 ATCACCGTGCCACGGTTCGAGGTAGATGGCAAAAGCTCCCGGGCGCTTGTTGCCACCCTG 222339 Query 76762 ATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGT 76821 ||| | |||| ||| || || || || || | || |||||| | | ||||| || | Sbjct 222340 ATCCACGTATCGGGCCGTATTGTTGTACACGCGCAGCATTGGCACCAACCCGTTTGAAAT 222399 Query 76822 ACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT-AGGCCTA 76880 ||||| || || || || || | || || |||||| | | | | || || | Sbjct 222400 TCCATTCGTGCCCGAGATGTACGTACCTTTCGCGCGAATAC-AGTGCACGTTCAGCCCAA 222458 Query 76881 TTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTA 76940 |||| || || ||| || || || ||||| | |||| || || ||||| || || | Sbjct 222459 TTCCGCCAGCAGATTTTGAAATCAGTGCACACTGCTTCAGCGTATCGTAGATACCTTCAA 222518 Query 76941 TACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTG 77000 | || || ||| |||| | || | |||||| |||| || || | || | | Sbjct 222519 TGCTGTCGTCCGACATGGTGAGCAAGAAACAGGACGACAACTGCGGACGTTGCGTAGCCG 222578 Query 77001 CATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTT 77060 | ||||| || || || ||||| || || | || ||||| |||||||| || | Sbjct 222579 CCGCAAACATGGTCGGTGAGGCATGGGTAAAGTAGCGCTCCGAAAGCAGATTGTAAGTCT 222638 Query 77061 CAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGCT 77120 | || |||| || || || |||||| || | || || |||||||||||||||| Sbjct 222639 CGATTGCTGCATCGATGTCTTCACCATGAATGCCGATCGCAACGCGCATCAACATATGCT 222698 Query 77121 GAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAA 77180 | ||||| || || |||| || || ||||||||||| || || |||||||| | Sbjct 222699 GCGGTCGCTCAACGATCTTGCCCTTGATCTTCAACAAGTAGGACCGCTCTAAAGTTTTGA 222758 Query 77181 AACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACCGAATTTAG 77232 | || ||||||||||| ||| || | || ||||| ||| ||||||| || Sbjct 222759 AGCCGAAATAGTTGTACCCAAAATCGCGATCATAAATTATAGCCGAATTCAG 222810 >seq628 Length=1452984 Score = 118 bits (130), Expect = 2e-21 Identities = 278/415 (67%), Gaps = 5/415 (1%) Strand=Plus/Plus Query 46464 ATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGTTTGAC 46523 ||| || ||||| || || ||| | ||||| || || ||||| || | | | ||| Sbjct 708020 ATCGGCTACGAACTCAATGTACTGTGACATCAGATCGCAGTTCATACCGAGCATATCGAC 708079 Query 46524 CGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTATCGATGT 46583 || || || | ||| | ||| || || || || | || ||||| || || | || Sbjct 708080 TGGCAGTGCTTTCGTCAAAAATTCCTGCTCGATTGCAACCGCATCACGGATGATGGCCGT 708139 Query 46584 TACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAAAATCACA 46643 || |||| ||| || | || || |||||||| | || ||||| ||||| Sbjct 708140 CACGCGCTCCTTCGAAGGTTTCTGTACCAGATACTTAAACATCAGGCAGGCAAAGTCACA 708199 Query 46644 ATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCC 46703 || || |||||||| | ||| | ||||| || || || || || ||||| ||||| Sbjct 708200 GTGTAGTCCTTCATCACGCGAAATCAGCTCGTTCGAGAAGGTAAGTCCCGGCATCAGTCC 708259 Query 46704 ACGCTTTTTGAGCCAAAATATAGCCGCGAAAGAT-CCAGAAAAGAATATGCCTTCTACAG 46762 |||||| || ||||| || || || || |||| | || ||||| || ||||| |||| Sbjct 708260 ACGCTTCTTCAGCCAGAAAATGGCGGC-AAAGCTACCGCTGAAGAAGATACCTTCGACAG 708318 Query 46763 CCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATT--ATGA-ATCCACCTTTGAG 46819 | || || ||||| | | ||| || | | || | || ||| ||||| | | | Sbjct 708319 CAGCAAACGCGACGACACGCTCGCCAAAGTTTGCCTTCTTGCTTGAGATCCAGTTCAGTG 708378 Query 46820 CCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAA 46874 ||||||| ||||| ||||| || || |||| ||||| || ||||| || || || Sbjct 708379 CCCAATCGGCCTTCTTCTTCACGCACGGCAGCGTTTCAATTGCATTGAACAGGAA 708433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712921994941440