Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28]
1,392 sequences; 225,223,604 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq575 136 3e-27
seq672 129 4e-25
seq949 111 1e-19
>seq575
Length=281738
Score = 136 bits (150), Expect = 3e-27
Identities = 156/210 (74%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187
|||||| ||||| || |||||| || ||||| || || | ||| ||| | || ||
Sbjct 24155 CACCAGATGAAGGGTCGACTCCTTCTGAATGTTATAGTCAGACAGTGTGCGTCCATCCTC 24096
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
||||||||| ||||| |||||||||||||||||||| | || | || ||||| |||
Sbjct 24095 CAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCCGGCGGGATGCCCTCCTTATCCTG 24036
Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
|||||| ||||| | | || || || | || || ||||| | ||||| |||||
Sbjct 24035 GATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATAGTCTT 23976
Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||||||||||| || |||||||| |||||
Sbjct 23975 ACCCGTGAGGGTTTTGACGAAGATCTGCAT 23946
>seq672
Length=1102954
Score = 129 bits (142), Expect = 4e-25
Identities = 161/221 (73%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179
|||| || |||||| ||||| || ||||| || |||||||| || | || |||
Sbjct 391586 AGTCGCAGCACCAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCCGACAGAGTGCGG 391645
Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239
| || ||||||||||| ||||| ||||| | |||||||||||||| || | ||||||
Sbjct 391646 CCATCCTCCAGCTGCTTACCGGCGAAGATGAGACGCTGCTGATCTGGGGGAATTCCTTCC 391705
Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299
|| ||| ||||| ||||| || | || ||||| | | || ||||| | ||
Sbjct 391706 TTATCCTGAATCTTTGCCTTCACATTTTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTG 391765
Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGAT 44340
|| ||||| || ||||| || |||||||| || ||||||||
Sbjct 391766 ATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCATGAT 391806
>seq949
Length=1771395
Score = 111 bits (122), Expect = 1e-19
Identities = 152/210 (72%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
||||| || || || ||||| || || ||||| || | || || | || |||
Sbjct 446688 ACCAGATGGAGAGTCGATTCCTTCTGAATATTGTAGTCCGACAGCGTACGGCCATCTTCC 446747
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
| |||||| || |||||||||| |||||||||||||| || | || ||||| |||
Sbjct 446748 AACTGCTTGCCAGCAAAGATCAGACGCTGCTGATCTGGTGGGATTCCCTCCTTATCCTGA 446807
Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
||||| || | || ||| | ||||| |||| | || ||||||| || ||||||||
Sbjct 446808 ATCTT-GGCCTTAACATTCTCGATGGTATCGGATGGCTCAACCTCCAGGGTGATCGTCTT 446866
Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||| || || ||||| |||||||| |||||
Sbjct 446867 TCCAGTTAGAGTCTTGACGAAGATCTGCAT 446896
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359984292762864
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |