Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq575 136 3e-27 seq672 129 4e-25 seq949 111 1e-19 >seq575 Length=281738 Score = 136 bits (150), Expect = 3e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 |||||| ||||| || |||||| || ||||| || || | ||| ||| | || || Sbjct 24155 CACCAGATGAAGGGTCGACTCCTTCTGAATGTTATAGTCAGACAGTGTGCGTCCATCCTC 24096 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||||||||| ||||| |||||||||||||||||||| | || | || ||||| ||| Sbjct 24095 CAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCCGGCGGGATGCCCTCCTTATCCTG 24036 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 |||||| ||||| | | || || || | || || ||||| | ||||| ||||| Sbjct 24035 GATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATAGTCTT 23976 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||||||| || |||||||| ||||| Sbjct 23975 ACCCGTGAGGGTTTTGACGAAGATCTGCAT 23946 >seq672 Length=1102954 Score = 129 bits (142), Expect = 4e-25 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 |||| || |||||| ||||| || ||||| || |||||||| || | || ||| Sbjct 391586 AGTCGCAGCACCAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCCGACAGAGTGCGG 391645 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | || ||||||||||| ||||| ||||| | |||||||||||||| || | |||||| Sbjct 391646 CCATCCTCCAGCTGCTTACCGGCGAAGATGAGACGCTGCTGATCTGGGGGAATTCCTTCC 391705 Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299 || ||| ||||| ||||| || | || ||||| | | || ||||| | || Sbjct 391706 TTATCCTGAATCTTTGCCTTCACATTTTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTG 391765 Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGAT 44340 || ||||| || ||||| || |||||||| || |||||||| Sbjct 391766 ATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCATGAT 391806 >seq949 Length=1771395 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 ||||| || || || ||||| || || ||||| || | || || | || ||| Sbjct 446688 ACCAGATGGAGAGTCGATTCCTTCTGAATATTGTAGTCCGACAGCGTACGGCCATCTTCC 446747 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | |||||| || |||||||||| |||||||||||||| || | || ||||| ||| Sbjct 446748 AACTGCTTGCCAGCAAAGATCAGACGCTGCTGATCTGGTGGGATTCCCTCCTTATCCTGA 446807 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| || | || ||| | ||||| |||| | || ||||||| || |||||||| Sbjct 446808 ATCTT-GGCCTTAACATTCTCGATGGTATCGGATGGCTCAACCTCCAGGGTGATCGTCTT 446866 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || || ||||| |||||||| ||||| Sbjct 446867 TCCAGTTAGAGTCTTGACGAAGATCTGCAT 446896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359984292762864