Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq672 149 2e-30 seq949 129 1e-24 seq575 129 1e-24 >seq672 Length=1102954 Score = 149 bits (164), Expect = 2e-30 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||||||| ||||| || || || ||||| || ||||| || || ||| Sbjct 391800 CAGATTTTCGTGAAAACACTCACCGGCAAGACCATCACACTTGAGGTCGAGCCTTCGGAC 391741 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || || |||||||||||| || |||||||| || || || ||||| Sbjct 391740 ACGATCGAAAATGTGAAGGCAAAGATTCAGGATAAGGAAGGAATTCCCCCAGATCAGCAG 391681 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| || ||||| | ||||| | || || ||| | Sbjct 391680 CGTCTCATCTTCGCCGGTAAGCAGCTGGAGGATGGCCGCACTCTGTCGGACTACAACATT 391621 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 || || ||||| || || ||||| || || |||| Sbjct 391620 CAGAAGGAATCTACCCTTCATCTGGTGCTGCGACT 391586 >seq949 Length=1771395 Score = 129 bits (142), Expect = 1e-24 Identities = 158/215 (73%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || ||||| || ||||| || ||||| ||||||||||| ||||| || Sbjct 446899 AAAATGC---AGATCTTCGTCAAGACTCTAACTGGAAAGACGATCACCCTGGAGGTTGAG 446843 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || || ||||||||||| || || ||||||||||| || || |||||||| || Sbjct 446842 CCATCCGATACCATCGAGAATGTTAAGGCCAAGATTCAGGATAAGGAGGGAATCCCACCA 446783 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || ||||| || || ||||| || || || ||| | |||||||| | || || | || Sbjct 446782 GATCAGCAGCGTCTGATCTTTGCTGGCAAGCAGTTGGAAGATGGCCGTACGCTGTCGGAC 446723 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 || || | || || ||||| || || ||||| || Sbjct 446722 TACAATATTCAGAAGGAATCGACTCTCCATCTGGT 446688 >seq575 Length=281738 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| ||||| ||||| || || || || ||||| ||||| || ||| || Sbjct 23949 CAGATCTTCGTCAAAACCCTCACGGGTAAGACTATTACCCTTGAGGTCGAGCCCTCGGAT 24008 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || || ||||| ||||| || || || ||||| ||||| ||||| Sbjct 24009 ACGATCGAGAATGTGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCGCCGGATCAGCAG 24068 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||||||||| || ||||| || |||||| | || || | || |||||| | Sbjct 24069 CGTTTGATCTTCGCCGGTAAGCAGCTGGAGGATGGACGCACACTGTCTGACTATAACATT 24128 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || ||||| || Sbjct 24129 CAGAAGGAGTCGACCCTTCATCTGGT 24154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203709731454048