Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28]
1,392 sequences; 225,223,604 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq672 149 2e-30
seq949 129 1e-24
seq575 129 1e-24
>seq672
Length=1102954
Score = 149 bits (164), Expect = 2e-30
Identities = 162/215 (75%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||||||||| ||||| || || || ||||| || ||||| || || |||
Sbjct 391800 CAGATTTTCGTGAAAACACTCACCGGCAAGACCATCACACTTGAGGTCGAGCCTTCGGAC 391741
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| || || || |||||||||||| || |||||||| || || || |||||
Sbjct 391740 ACGATCGAAAATGTGAAGGCAAAGATTCAGGATAAGGAAGGAATTCCCCCAGATCAGCAG 391681
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||||||||| || ||||| || ||||| | ||||| | || || ||| |
Sbjct 391680 CGTCTCATCTTCGCCGGTAAGCAGCTGGAGGATGGCCGCACTCTGTCGGACTACAACATT 391621
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138
|| || ||||| || || ||||| || || ||||
Sbjct 391620 CAGAAGGAATCTACCCTTCATCTGGTGCTGCGACT 391586
>seq949
Length=1771395
Score = 129 bits (142), Expect = 1e-24
Identities = 158/215 (73%), Gaps = 3/215 (1%)
Strand=Plus/Minus
Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974
||||||| | || ||||| || ||||| || ||||| ||||||||||| ||||| ||
Sbjct 446899 AAAATGC---AGATCTTCGTCAAGACTCTAACTGGAAAGACGATCACCCTGGAGGTTGAG 446843
Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034
|| || ||||||||||| || || ||||||||||| || || |||||||| ||
Sbjct 446842 CCATCCGATACCATCGAGAATGTTAAGGCCAAGATTCAGGATAAGGAGGGAATCCCACCA 446783
Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094
|| ||||| || || ||||| || || || ||| | |||||||| | || || | ||
Sbjct 446782 GATCAGCAGCGTCTGATCTTTGCTGGCAAGCAGTTGGAAGATGGCCGTACGCTGTCGGAC 446723
Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129
|| || | || || ||||| || || ||||| ||
Sbjct 446722 TACAATATTCAGAAGGAATCGACTCTCCATCTGGT 446688
>seq575
Length=281738
Score = 129 bits (142), Expect = 1e-24
Identities = 152/206 (74%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| ||||| ||||| || || || || ||||| ||||| || ||| ||
Sbjct 23949 CAGATCTTCGTCAAAACCCTCACGGGTAAGACTATTACCCTTGAGGTCGAGCCCTCGGAT 24008
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| |||||||| || || ||||| ||||| || || || ||||| ||||| |||||
Sbjct 24009 ACGATCGAGAATGTGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCGCCGGATCAGCAG 24068
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | ||||||||||| || ||||| || |||||| | || || | || |||||| |
Sbjct 24069 CGTTTGATCTTCGCCGGTAAGCAGCTGGAGGATGGACGCACACTGTCTGACTATAACATT 24128
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || || ||||| ||
Sbjct 24129 CAGAAGGAGTCGACCCTTCATCTGGT 24154
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203709731454048
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |