Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq575 125 7e-24 seq672 109 5e-19 seq949 104 2e-17 >seq575 Length=281738 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || || | ||||||||| || || ||||||||||||||||||||| || Sbjct 24172 CCACCGCGCAGGCGAAGCACCAGATGAAGGGTCGACTCCTTCTGAATGTTATAGTCAGAC 24113 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || |||||||| |||||||| |||| ||||| || |||| || Sbjct 24112 AGTGTGCGTCCATCCTCCAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCCGGCGGG 24053 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | || |||||| ||| ||| || ||||| | | || || | ||| ||| Sbjct 24052 ATGCCCTCCTTATCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACC 23993 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || || || |||||||| || || || ||||| |||||||| Sbjct 23992 TCAAGGGTAATAGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 23946 >seq672 Length=1102954 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||||||||| || || |||||||||||||| ||||| || Sbjct 391577 CCACCACGAAGTCGCAGCACCAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCCGAC 391636 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || |||||||| |||||||| || || ||||| || || | |||| Sbjct 391637 AGAGTGCGGCCATCCTCCAGCTGCTTACCGGCGAAGATGAGACGCTGCTGATCTGGGGGA 391696 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | | ||||| ||| ||| | |||| ||||| | ||||| | ||| || Sbjct 391697 ATTCCTTCCTTATCC-TGAATCTTTGCCTTCACATTTTCGATCGTGTCCGAAGGCTCGAC 391755 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||| | || || || || || || || || || ||||||||||||||| Sbjct 391756 CTCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCATG 391804 >seq949 Length=1771395 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || |||||||| | |||||||| || || ||||||||||| || ||||| || Sbjct 446670 CCACCACGTAGACGAAGGACCAGATGGAGAGTCGATTCCTTCTGAATATTGTAGTCCGAC 446729 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || || | ||||||||| || || ||||| ||||| || || | || Sbjct 446730 AGCGTACGGCCATCTTCCAACTGCTTGCCAGCAAAGATCAGACGCTGCTGATCTGGTGGG 446789 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCAC 41814 | | |||||| ||| ||| | || || | ||| | | || ||| | ||| || Sbjct 446790 ATTCCCTCCTTATCC-TGAATCTTGGCCTTAACATTCTCGATGGTATCGGATGGCTCAAC 446848 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||||| || ||||| || || || || ||||| ||||| |||||||| || Sbjct 446849 CTCCAGGGTGATCGTCTTTCCAGTTAGAGTCTTGACGAAGATCTGCATTTT 446899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462295955910400