Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20koliensis_20[genbank_20GCA_5F000956275.1_202015-03-19] 41,925 sequences; 151,110,088 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq10535 161 1e-34 seq35382 91.5 2e-13 >seq10535 Length=3010 Score = 161 bits (178), Expect = 1e-34 Identities = 424/637 (67%), Gaps = 10/637 (2%) Strand=Plus/Plus Query 16016 CCCAGTTCC-GTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCA 16074 ||||| ||| | ||| || | ||| || || || || || || || |||||| ||||| Sbjct 22 CCCAGCTCCAGCAAC-AACCGATCGGCCACGAACTCAATGTACTGCGACATTAGTTCGCA 80 Query 16075 ATTAATTCCTATAA-GTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAA 16133 || || || | | |||| |||||||| || || || | || | || || ||||| | Sbjct 81 GTTCATGCCAAGCATGTCG-ACCGGAAGTGCCTTCGTCAGGAACTCCTGCTCGATCACGA 139 Query 16134 CCGCTTCTTTAATGATATCGGTGGCTCG-TGTTTCAGACGGTGTATGGTTTAGGTGTTTA 16192 |||| || ||||| || || | || | ||| |||||| | || || | Sbjct 140 CCGCATCGCGGATGATCTCCGTCACGCGCTCCTTC-GACGGTTTCTGCACCAGATACCGG 198 Query 16193 AACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAA 16252 ||||| || || || ||||| || || ||||| ||||| | ||| || || || || Sbjct 199 AACATCAGGCAAGCAAAGTCACAGTGCAGTCCCTCGTCGCGCGAGATCAGCTCATTCGAG 258 Query 16253 AAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAA--TGACC 16310 || || | ||| ||||| || || ||||| | |||||| || || ||||| || | Sbjct 259 AATGTCAGCCCCGGCATCAGGCCGCGCTTCTTCAGCCAGAAGATGGCCGCAAAGCTGCCA 318 Query 16311 CCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCAT 16370 | ||| ||| ||||||||||| | || || || | | || ||| | | |||| | Sbjct 319 CTGAA--GAAGATACCCTCAACTGCAGCGAACGCAACCACACGCTCCCCAAAGTTAGCCT 376 Query 16371 CTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTT 16430 || | ||||| ||| | |||| ||||| || | |||| || || ||||| Sbjct 377 TCTTGCTGGAGATCCAGTTCAGCGCCCAGTCGGCCTTCTTCTTTACGCACGGCAGCGTTT 436 Query 16431 CTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTA 16490 | || || || |||| | ||| |||| ||| ||| ||||| || ||||| | Sbjct 437 CGATCGCGTTGAACAGATACTCCCGCTCCTTCGGGTCGCGTATGTACGTGTCGATCAGCA 496 Query 16491 AACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAG 16550 ||||||||| ||| | |||||| || || |||||||| || |||||||| || | Sbjct 497 GCGAGTACATTTCGCTGTGCACGTTCTCCATCGCAATCTGAAACCCGTAGAAGCAGCGGG 556 Query 16551 CCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGT 16610 |||||| | || || ||| | || || ||| |||| ||||| || |||||||||| Sbjct 557 CCTCCGTCACCTGCACCTCCTGGCTGAAGCGCTCCACCAGATTCTCGTTTACGATACCGT 616 Query 16611 CACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAA 16647 | || || || || || | || |||| ||||| Sbjct 617 CCGACGCGGCGAAGAAGGCAAGTACGTGCGAGATGAA 653 >seq35382 Length=6325 Score = 91.5 bits (100), Expect = 2e-13 Identities = 198/292 (68%), Gaps = 6/292 (2%) Strand=Plus/Minus Query 118930 TCGAATTTCATGTATCGTATCTTTCCAAATACGGTACGCTCCTTCCATGCTCTG-TCGTG 118988 ||| | |||||||| || || || ||||| | |||||||||||| | ||| || || Sbjct 3874 TCGTAGTTCATGTAGCGAATTTTGCCAAAAATTTCCCGCTCCTTCCATCC-CTGATCATG 3816 Query 118989 GAGTCCTGCTACTGCCCATAGACATCCCACGTATCCGTTGGGATCTGTTCCGTCTAACTC 119048 || || || | | ||| | || || ||||||||||| ||||| || || | Sbjct 3815 GATGCCGGCGATCGACCACATGCACCCGACGTATCCGTTCGGATCGCGCCCATCCAGGCT 3756 Query 119049 GTACTTATCGTTTAAGTAGATACAGACGCTTAACGCACTT--TCCGGAGTCTTACTCCAT 119106 ||| |||||| | ||||| | || || || ||| || || || || |||| Sbjct 3755 GTAGCGATCGTTCAGATAGAT--GGCCGTTTCGAGCGCTTCCTCGGGCGTTTTCGTCCAC 3698 Query 119107 TCCAGTAtttttttAGCCCAGTACATACGTAAATACCCGTGCATTTTACCCTCGTTAATC 119166 || |||||||| || ||||| ||||| || | |||||||||| || |||| || | | Sbjct 3697 TCGAGTATTTTCTTCGCCCAATACATGCGCAGGAACCCGTGCATCTTGGCCTCCTTCACC 3638 Query 119167 ATCTGAAGTTGTGCGGTGTTCCATAGAGGATCGTGTGTACGGGCGTGTTCTA 119218 | ||| || || || | |||||| || ||||| || |||| ||||| Sbjct 3637 AGCTGCAGCTGAGCTGCGTTCCACAGGTCGTCGTGGGTGTGGGCAGTTTCTA 3586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511146386891000