Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20koliensis_20[genbank_20GCA_5F000956275.1_202015-03-19] 41,925 sequences; 151,110,088 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq10535 324 1e-83 seq40490 86.0 6e-12 >seq10535 Length=3010 Score = 324 bits (358), Expect = 1e-83 Identities = 510/724 (70%), Gaps = 10/724 (1%) Strand=Plus/Minus Query 57589 AGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATT 57648 |||| ||||| || || ||||| || ||||| || |||||||| ||||| ||| || | Sbjct 742 AGGCGGAAGCTTCCTTCTGGACGGTGGAAGAGGTGGACCTGTCGAAGGACATGAAAGACT 683 Query 57649 GGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCG 57708 |||| || ||||| ||| | | || || ||||| | || || ||||||| Sbjct 682 GGGAATCGCTCAAGCCGAGCGAGCGTCACTTCATCTCGCACGTACTTGCCTTCTTCGCCG 623 Query 57709 CATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGA 57768 | || || ||||| || ||||||||| |||| || | || || || ||||| |||| Sbjct 622 CGTCGGACGGTATCGTAAACGAGAATCTGGTGGAGCGCTTCAGCCAGGAGGTGCAGGTGA 563 Query 57769 CGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGT 57828 ||||||| | ||||| ||||| ||||| | || || || |||||||| ||||||| Sbjct 562 CGGAGGCCCGCTGCTTCTACGGGTTTCAGATTGCGATGGAGAACGTGCACAGCGAAATGT 503 Query 57829 ATTCGCTACTCATCGATACGTACGTGAAGGAC---AACGA-CGAGAAACGTAGACTGTTC 57884 | ||||| || ||||| |||||| | ||| || || || || ||| |||||| Sbjct 502 ACTCGCTGCTGATCGACACGTACATACGCGACCCGAAGGAGCGGGA---GTAT-CTGTTC 447 Query 57885 AACGCGATCGAAACAATGCCC-GCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGAT 57943 |||||||||||||| |||| ||| | |||||||| || ||| | | || ||||| Sbjct 446 AACGCGATCGAAACGCTGCCGTGCG-TAAAGAAGAAGGCCGACTGGGCGCTGAACTGGAT 388 Query 57944 AAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTAT 58003 ||| | ||| | || | ||| | | | |||||||| || || || ||||| Sbjct 387 CTCCAGCAAGAAGGCTAACTTTGGGGAGCGTGTGGTTGCGTTCGCTGCAGTTGAGGGTAT 328 Query 58004 ATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGG 58063 ||||| |||||||||||||| || || ||| ||||||| |||||||||||||| || Sbjct 327 CTTCTTCAGTGGCAGCTTTGCGGCCATCTTCTGGCTGAAGAAGCGCGGCCTGATGCCGGG 268 Query 58064 CCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTG 58123 ||||| || || ||| |||| |||||||||||||| || || ||| ||||| || Sbjct 267 GCTGACATTCTCGAATGAGCTGATCTCGCGCGACGAGGGACTGCACTGTGACTTTGCTTG 208 Query 58124 CCTAATGTACTCTCACATTGTCAATAAACCGACGCGGGATCGCATCTTGGACATTATCAC 58183 ||| |||| | | | || | |||||| || ||| ||| | ||| || ||| Sbjct 207 CCTGATGTTCCGGTATCTGGTGCAGAAACCGTCGAAGGAGCGCGTGACGGAGATCATCCG 148 Query 58184 CGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGG 58243 ||| ||||||| |||||| | ||||| | || | || || ||||| | |||||| || Sbjct 147 CGATGCGGTCGTGATCGAGCAGGAGTTCCTGACGAAGGCACTTCCGGTCGACATGCTTGG 88 Query 58244 TATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGA 58303 |||||| || | ||||| ||||||||||||| || ||||| | | ||||| || Sbjct 87 CATGAACTGCGAACTAATGTCGCAGTACATTGAGTTCGTGGCCGATCGGTTGTTGCTGGA 28 Query 58304 ACTG 58307 ||| Sbjct 27 GCTG 24 >seq40490 Length=2651 Score = 86.0 bits (94), Expect = 6e-12 Identities = 168/244 (69%), Gaps = 12/244 (5%) Strand=Plus/Minus Query 31184 GAATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTT 31243 ||| ||| |||||| ||||| ||||| || || || || |||||||| ||| |||| || Sbjct 653 GAAGCAATCATGCAGATTTTTGTAAAAACCCTAACCGGGAAAACGATTACCCTCGATGTC 594 Query 31244 GAACCGTCCGACA--GTG-TCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTG 31300 |||| | | ||| | || | ||||| | ||||| ||| ||||| | Sbjct 593 ATCGCGTCGCAAACGGTGCTTGACA---TCAAAAGCAAAATAGAGGAACGTGAAGGAATT 537 Query 31301 CCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTG---GAAGACTCTATGACT 31357 |||||||||| |||||| | || || |||||||| ||| || || ||| || | Sbjct 536 GCGCCCGACCAACAGCGTATCATCTTTGCTGGCAAGCAGCTGAACGATGACCGAAT---T 480 Query 31358 ATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGC 31417 || ||||| ||||| || | | |||||| | ||||||||||| || ||| ||| Sbjct 479 ATCTCTGATTACAACATACAGCATGGATCGACGATGCATCTGGTACTGCGATTGAAGGGA 420 Query 31418 GGTA 31421 |||| Sbjct 419 GGTA 416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445532790546000