Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20koliensis_20[genbank_20GCA_5F000956275.1_202015-03-19] 41,925 sequences; 151,110,088 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq10535 242 5e-59 seq40319 214 3e-50 seq12026 172 8e-38 seq2530 104 3e-17 >seq10535 Length=3010 Score = 242 bits (268), Expect = 5e-59 Identities = 492/724 (68%), Gaps = 30/724 (4%) Strand=Plus/Minus Query 125038 AGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATT 125097 |||| | || ||||| |||||||| |||||||| || ||||| |||||| || | || | Sbjct 742 AGGCGGAAGCTTCCTTCTGGACGGTGGAAGAGGTGGACCTGTCGAAGGACATGAAAGACT 683 Query 125098 GGGAGACTCGTTTGACTGAAACTGAGCGAGAGT----TTATATCGCACATTTTGGCCTTC 125153 |||| ||| || || | ||||||| || | || |||||| | | |||||| Sbjct 682 GGGAA--TCG-----CTCAAGCCGAGCGAGCGTCACTTCATCTCGCACGTACTTGCCTTC 630 Query 125154 TTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTG 125213 || |||| || || || ||||| ||||| |||||| || || ||| || ||| || Sbjct 629 TTCGCCGCGTCGGACGGTATCGTAAACGAGAATCTGGTGGAGCGCTTCAGCCAGGAGGTG 570 Query 125214 ACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCG 125273 | | |||| ||||| ||||| || || || ||| |||||||||||| Sbjct 569 CAGGTGACGGAGGCCCGCTGCTTCTACGGGTTTCAGATTGCGATGGAGAACGTGCACAGC 510 Query 125274 GAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAACGTAAAC---ACATG 125330 ||||||||||| ||||| |||| |||||| ||||| ||| || | | | | Sbjct 509 GAAATGTACTCGCTGCTGATCGACACGTACATACGCGACCCG-AAGG--AGCGGGAGTAT 453 Query 125331 CTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGG 125390 || || ||||| ||||| ||| |||||| || || ||||| | |||| | | Sbjct 452 CTGTTCAACGCGATCGAAACGCTGCCGTGCGTAAAGAAGAAGGCCGACTGGGCGCTGAAC 393 Query 125391 TGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAG 125450 |||||| | | ||| || | | || | |||| || ||||| || || ||| Sbjct 392 TGGATCTCCAGCAAGAAGGCTAACTTTGGGGAGCGTGTGGTTGCGTTCGCTGCAGTTGAG 333 Query 125451 GGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATG 125510 || |||||||| || || |||||||||||||| ||||| ||||||||||| || ||| Sbjct 332 GGTATCTTCTTCAGTGGCAGCTTTGCGGCCATCTTCTGGCTGAAGAAGCGCGGCCTGATG 273 Query 125511 CCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTT 125570 || || ||||| | || ||| | || || || |||||||| || |||||||||||| Sbjct 272 CCGGGGCTGACATTCTCGAATGAGCTGATCTCGCGCGACGAGGGACTGCACTGTGACTTT 213 Query 125571 GCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAG-ATCCAGCGATGAAAAG-G 125628 || || |||| || |||||| |||||| | || ||| | | | | Sbjct 212 GCTTGCCTGATGTTCCG---GTATCTG--------GTGCAGAAACCGTCGAAGGAGCGCG 164 Query 125629 TCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTAC 125688 | | | || | |||||| || ||| || || ||||| || || | | || | Sbjct 163 TGACGGAGATCATCCGCGATGCGGTCGTGATCGAGCAGGAGTTCCTGACGAAGGCACTTC 104 Query 125689 CGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAG 125748 ||||| |||| |||||||||||||| | ||||||| ||||||| ||||| ||||| | Sbjct 103 CGGTCGACATGCTTGGCATGAACTGCGAACTAATGTCGCAGTACATTGAGTTCGTGGCCG 44 Query 125749 ATCG 125752 |||| Sbjct 43 ATCG 40 >seq40319 Length=11284 Score = 214 bits (236), Expect = 3e-50 Identities = 397/577 (69%), Gaps = 28/577 (5%) Strand=Plus/Plus Query 127102 TTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTC 127161 |||||| | || || || ||||| || || || | ||| || ||||| || || ||| || Sbjct 8099 TTGCGGAAGAAAATCACACCGGCACGGGGCCCACGGAGCGTTTTGTGTGTCGTTGTGCTC 8158 Query 127162 ACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCAATG 127221 || | || ||||| || || || |||| | |||||| || || | |||| Sbjct 8159 ACCACATCGGCGTACTCGAACGGCGACGGGATGATGCCGGCCGCAACCAGCCCGGAAATG 8218 Query 127222 TGTGCAATATCGGCCATCAGCAAGGAGCCGG-CTGCATCGGCAATCTCTCGGAATCGTCT 127280 || || |||||||| | ||| | | ||| ||| ||| ||||||| ||||| || | Sbjct 8219 TGGGCCATATCGGCGAACAGGTACGCCCCGTTCTGGTTCG-CAATCTCCCGGAAGCGCTT 8277 Query 127281 ATAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAATAG 127340 ||||| | || || | ||||| | ||||||| ||||| | | | || ||||| || Sbjct 8278 GTAGTCGAGGCAGCGCGAGTAGCACGAGATGCCGGCGATGATCACCTTCGGCTTGAACAG 8337 Query 127341 ATTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTTGTA 127400 | ||| |||| | | ||| | ||||||| || || ||| || ||||||||||| Sbjct 8338 ACGGGCTGTCTCCTCCATCTTGTCGTAGTCGATCAGCCCCGTCACCGGGTCCACCTTGTA 8397 Query 127401 CGGCATGCTTTCGAAAAAGAGTGATGTAGCGGACA-------CGT-TGCG----GAATCC 127448 ||||||||| ||||| |||| || || ||||| | ||| |||| ||| || Sbjct 8398 CGGCATGCTCTCGAAGAAGATGGAGGTGGCGGAGATTTTCTTCGTCTGCGTCATGAACCC 8457 Query 127449 GTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTAAC 127508 |||||| || ||||| ||||| |||||||| || |||||||| | ||||||||||| | Sbjct 8458 GTGCGTAAGATGGCCACCGTCCGGCAGATCCAGCCCCATGATGCGACCGTGCGGTTCGAT 8517 Query 127509 GATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACG-------GTTGTACAC 127561 | | | || |||||||||||||| ||| ||||| ||||||| |||| | | Sbjct 8518 CAGTGCCGTATACACGGCAAAGTTCGCCGGTGAGCCGGAGTACGGCTGCACGTTGCAACC 8577 Query 127562 ACACTCCCCATTCGGACTCGTTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTAGCA 127621 |||||| | |||| ||| | | |||| ||| |||| |||||| || | Sbjct 8578 CCACTCC---TCCGGA-TCG---AGCCGGTACGCCTCGAGCGCACGCTTCTGTGCCAGGA 8630 Query 127622 GTTCGATGCGATCGATAAACTCGTTACCACCATAGTA 127658 | ||||| ||||| ||||| || ||||| ||||| Sbjct 8631 GCTCGATCTCGTCGATGAACTCATTGCCACCGTAGTA 8667 >seq12026 Length=3406 Score = 172 bits (190), Expect = 8e-38 Identities = 388/581 (67%), Gaps = 8/581 (1%) Strand=Plus/Minus Query 49797 CCGTGGAGCCTCCCATGTTTCTATACATGATGGCCTTCATGACGACCACGGTCATCGAGC 49856 |||| || || | ||||| || ||||||||||| || ||| ||| ||||| | |||| Sbjct 2185 CCGTCGAACCGTCGATGTTCCTGTACATGATGGCGTTTATGCTGACGTCGGTCGTGGAGC 2126 Query 49857 AGGCGTTTTACGTGTACCAAGCGTGCACCGTCAACCATGGCTACTCGCCAGAGGTGTGCC 49916 | ||||| | | | ||| |||||||||| || | || ||||| |||| || || |||| Sbjct 2125 AAGCGTTCTTCCTCTACAAAGCGTGCACGGTGGATCACGGCTATTCGCACGACGTATGCC 2066 Query 49917 ACAACATTAGCCAGTACGATGACATCAACAACCGAGTCCAGCAGACTGTGTCTACATTTC 49976 |||||| |||||| | ||||| || || | |||||| ||| ||| || || | Sbjct 2065 TCAACATCGAGCAGTACCAGGACATTAAGAAGCAGGTCCAGGTGACGACGTCCACCTTCC 2006 Query 49977 ATCAGTGGAACGGTGTAGCCAGTCATGTGGTGCCCTTTATATTGGCCTTTTTCCTAGGAT 50036 | ||||||||| | |||| | ||||| || | || ||||| | || || || Sbjct 2005 ACCAGTGGAACAACATCGCCATGTACGTGGTACCGATCGTACTGGCCCTGTTTCTCGGCG 1946 Query 50037 CCTATAGTGATAGGCGCGGTAGAAAGATTGTACTCGTATGTGGACTCGTAGGTAAACTCT 50096 ||| ||| | || || | || || ||| | ||||| | || || | Sbjct 1945 CCTGGTCCGATCGCCGTGGGCGCAAACTTCCCCTCATCCTCGGACTGATCGGGAAGTTTG 1886 Query 50097 TTTTCTCGGCAATGCTAACCGTAAACAGTCTCA---AGAGCTGGCCCGTAGAGTATATAA 50153 | | ||||| ||| | || |||| | || | |||||||| ||||| || | Sbjct 1885 TCTACTCGGTGATGATCGTGGTGAACACGCGCATGCCGTCGTGGCCCGTGGAGTACATCA 1826 Query 50154 TCTACACGGCATCCTTTCCGAGTGCACTCACCGGAGCCGATTTGACCATATTCGCAGCGT 50213 ||||||| ||| || | ||||| | || ||||| || ||| | | || ||||| | | Sbjct 1825 TCTACACCGCAACCATCCCGAGCGTGCTGACCGGGGCGGATATTGCAATCTTCGCGTCCT 1766 Query 50214 GCTTTGCCTACATTGCCGATGTGTCGACTGTGGAGAATCGCACGCTACGAGTGGGCATCT 50273 |||| || ||||| |||| | |||| || ||| | || ||||| || | || Sbjct 1765 GCTTCGCGTACATCTCCGACATCACGACGGTCGAGGAGCGGACGCTGCGCATCACGATAC 1706 Query 50274 TGGATGCCGTCTACCTGAGCACGATGCCAACCGGTGTGGCGATCGGTAGTGTGCTGTGGA 50333 |||| || |||||||||||||||||| | ||| || ||| |||||| |||| | | | Sbjct 1705 TGGACGCGACCTACCTGAGCACGATGCCGATCGGGGTCGCGCTCGGTAATGTGATCTTCA 1646 Query 50334 AGCGATTCCG----ATCCTACCCCATCATGTTTGCAATCAA 50370 | | || | | ||| ||| | |||||||| | ||||| Sbjct 1645 ATC-ATACGGGCAAATCGTACACGATCATGTTCACCATCAA 1606 >seq2530 Length=9775 Score = 104 bits (114), Expect = 3e-17 Identities = 229/336 (68%), Gaps = 8/336 (2%) Strand=Plus/Minus Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126 || ||| |||| || |||||||| || || ||| | |||| || |||| || | Sbjct 1772 GGTGATTTGGGACCTGTGTACGGTTTTCAATGGCGCCACTTTGGGGCCAAATACAAAACG 1713 Query 70127 TGCGA-GACAGACTATTCGGGTCAGGGTGTTGATCAATT-GCAGACAATCATTGACACTC 70184 ||| | ||| || || | || || || | || ||| | ||||| | || |||| Sbjct 1712 TGCCATGAC-GATTACACTGGGCAAGGGATAGACCAACTCGCAGAGG-TAATCGACAAGA 1655 Query 70185 TCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGC 70244 | || | ||| || ||| | | ||| | ||| || | |||||||| | ||| | | Sbjct 1654 TTAAAAACAACCCGTACGATCGTCGAATCATCATGAGCGCCTGGAATCCGTCCGATATCC 1595 Query 70245 ACCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTACTCGT--ACGATGGCAA 70302 | | ||||| || ||||| ||||| ||||||||||| |||| | || || | || | Sbjct 1594 CCAATATGGCTCTTCCACCTTGTCATTGTTTGGCTCAATTTT--TTGTTGACAACGGAGA 1537 Query 70303 ATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACAT 70362 ||| |||||| |||||||| || ||||| ||||| | |||||||| || ||||| Sbjct 1536 ATTATCATGCCAGATGTATCAACGGTCGGCCGATGTGGGCTTGGGTGTACCATTCAACAT 1477 Query 70363 TGCAAGCTATTCTATGTTGACGCACATGATTGCTCA 70398 |||||||| || || | || || ||||| || || Sbjct 1476 CGCAAGCTACTCGTTGCTTACCCATATGATCGCGCA 1441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740670838663000