Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20koliensis_20[genbank_20GCA_5F000956275.1_202015-03-19]
41,925 sequences; 151,110,088 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq10535 242 5e-59
seq40319 214 3e-50
seq12026 172 8e-38
seq2530 104 3e-17
>seq10535
Length=3010
Score = 242 bits (268), Expect = 5e-59
Identities = 492/724 (68%), Gaps = 30/724 (4%)
Strand=Plus/Minus
Query 125038 AGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATT 125097
|||| | || ||||| |||||||| |||||||| || ||||| |||||| || | || |
Sbjct 742 AGGCGGAAGCTTCCTTCTGGACGGTGGAAGAGGTGGACCTGTCGAAGGACATGAAAGACT 683
Query 125098 GGGAGACTCGTTTGACTGAAACTGAGCGAGAGT----TTATATCGCACATTTTGGCCTTC 125153
|||| ||| || || | ||||||| || | || |||||| | | ||||||
Sbjct 682 GGGAA--TCG-----CTCAAGCCGAGCGAGCGTCACTTCATCTCGCACGTACTTGCCTTC 630
Query 125154 TTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTG 125213
|| |||| || || || ||||| ||||| |||||| || || ||| || ||| ||
Sbjct 629 TTCGCCGCGTCGGACGGTATCGTAAACGAGAATCTGGTGGAGCGCTTCAGCCAGGAGGTG 570
Query 125214 ACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCG 125273
| | |||| ||||| ||||| || || || ||| ||||||||||||
Sbjct 569 CAGGTGACGGAGGCCCGCTGCTTCTACGGGTTTCAGATTGCGATGGAGAACGTGCACAGC 510
Query 125274 GAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAACGTAAAC---ACATG 125330
||||||||||| ||||| |||| |||||| ||||| ||| || | | | |
Sbjct 509 GAAATGTACTCGCTGCTGATCGACACGTACATACGCGACCCG-AAGG--AGCGGGAGTAT 453
Query 125331 CTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGG 125390
|| || ||||| ||||| ||| |||||| || || ||||| | |||| | |
Sbjct 452 CTGTTCAACGCGATCGAAACGCTGCCGTGCGTAAAGAAGAAGGCCGACTGGGCGCTGAAC 393
Query 125391 TGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAG 125450
|||||| | | ||| || | | || | |||| || ||||| || || |||
Sbjct 392 TGGATCTCCAGCAAGAAGGCTAACTTTGGGGAGCGTGTGGTTGCGTTCGCTGCAGTTGAG 333
Query 125451 GGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATG 125510
|| |||||||| || || |||||||||||||| ||||| ||||||||||| || |||
Sbjct 332 GGTATCTTCTTCAGTGGCAGCTTTGCGGCCATCTTCTGGCTGAAGAAGCGCGGCCTGATG 273
Query 125511 CCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTT 125570
|| || ||||| | || ||| | || || || |||||||| || ||||||||||||
Sbjct 272 CCGGGGCTGACATTCTCGAATGAGCTGATCTCGCGCGACGAGGGACTGCACTGTGACTTT 213
Query 125571 GCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAG-ATCCAGCGATGAAAAG-G 125628
|| || |||| || |||||| |||||| | || ||| | | | |
Sbjct 212 GCTTGCCTGATGTTCCG---GTATCTG--------GTGCAGAAACCGTCGAAGGAGCGCG 164
Query 125629 TCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTAC 125688
| | | || | |||||| || ||| || || ||||| || || | | || |
Sbjct 163 TGACGGAGATCATCCGCGATGCGGTCGTGATCGAGCAGGAGTTCCTGACGAAGGCACTTC 104
Query 125689 CGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAG 125748
||||| |||| |||||||||||||| | ||||||| ||||||| ||||| ||||| |
Sbjct 103 CGGTCGACATGCTTGGCATGAACTGCGAACTAATGTCGCAGTACATTGAGTTCGTGGCCG 44
Query 125749 ATCG 125752
||||
Sbjct 43 ATCG 40
>seq40319
Length=11284
Score = 214 bits (236), Expect = 3e-50
Identities = 397/577 (69%), Gaps = 28/577 (5%)
Strand=Plus/Plus
Query 127102 TTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTC 127161
|||||| | || || || ||||| || || || | ||| || ||||| || || ||| ||
Sbjct 8099 TTGCGGAAGAAAATCACACCGGCACGGGGCCCACGGAGCGTTTTGTGTGTCGTTGTGCTC 8158
Query 127162 ACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCAATG 127221
|| | || ||||| || || || |||| | |||||| || || | ||||
Sbjct 8159 ACCACATCGGCGTACTCGAACGGCGACGGGATGATGCCGGCCGCAACCAGCCCGGAAATG 8218
Query 127222 TGTGCAATATCGGCCATCAGCAAGGAGCCGG-CTGCATCGGCAATCTCTCGGAATCGTCT 127280
|| || |||||||| | ||| | | ||| ||| ||| ||||||| ||||| || |
Sbjct 8219 TGGGCCATATCGGCGAACAGGTACGCCCCGTTCTGGTTCG-CAATCTCCCGGAAGCGCTT 8277
Query 127281 ATAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAATAG 127340
||||| | || || | ||||| | ||||||| ||||| | | | || ||||| ||
Sbjct 8278 GTAGTCGAGGCAGCGCGAGTAGCACGAGATGCCGGCGATGATCACCTTCGGCTTGAACAG 8337
Query 127341 ATTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTTGTA 127400
| ||| |||| | | ||| | ||||||| || || ||| || |||||||||||
Sbjct 8338 ACGGGCTGTCTCCTCCATCTTGTCGTAGTCGATCAGCCCCGTCACCGGGTCCACCTTGTA 8397
Query 127401 CGGCATGCTTTCGAAAAAGAGTGATGTAGCGGACA-------CGT-TGCG----GAATCC 127448
||||||||| ||||| |||| || || ||||| | ||| |||| ||| ||
Sbjct 8398 CGGCATGCTCTCGAAGAAGATGGAGGTGGCGGAGATTTTCTTCGTCTGCGTCATGAACCC 8457
Query 127449 GTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTAAC 127508
|||||| || ||||| ||||| |||||||| || |||||||| | ||||||||||| |
Sbjct 8458 GTGCGTAAGATGGCCACCGTCCGGCAGATCCAGCCCCATGATGCGACCGTGCGGTTCGAT 8517
Query 127509 GATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACG-------GTTGTACAC 127561
| | | || |||||||||||||| ||| ||||| ||||||| |||| | |
Sbjct 8518 CAGTGCCGTATACACGGCAAAGTTCGCCGGTGAGCCGGAGTACGGCTGCACGTTGCAACC 8577
Query 127562 ACACTCCCCATTCGGACTCGTTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTAGCA 127621
|||||| | |||| ||| | | |||| ||| |||| |||||| || |
Sbjct 8578 CCACTCC---TCCGGA-TCG---AGCCGGTACGCCTCGAGCGCACGCTTCTGTGCCAGGA 8630
Query 127622 GTTCGATGCGATCGATAAACTCGTTACCACCATAGTA 127658
| ||||| ||||| ||||| || ||||| |||||
Sbjct 8631 GCTCGATCTCGTCGATGAACTCATTGCCACCGTAGTA 8667
>seq12026
Length=3406
Score = 172 bits (190), Expect = 8e-38
Identities = 388/581 (67%), Gaps = 8/581 (1%)
Strand=Plus/Minus
Query 49797 CCGTGGAGCCTCCCATGTTTCTATACATGATGGCCTTCATGACGACCACGGTCATCGAGC 49856
|||| || || | ||||| || ||||||||||| || ||| ||| ||||| | ||||
Sbjct 2185 CCGTCGAACCGTCGATGTTCCTGTACATGATGGCGTTTATGCTGACGTCGGTCGTGGAGC 2126
Query 49857 AGGCGTTTTACGTGTACCAAGCGTGCACCGTCAACCATGGCTACTCGCCAGAGGTGTGCC 49916
| ||||| | | | ||| |||||||||| || | || ||||| |||| || || ||||
Sbjct 2125 AAGCGTTCTTCCTCTACAAAGCGTGCACGGTGGATCACGGCTATTCGCACGACGTATGCC 2066
Query 49917 ACAACATTAGCCAGTACGATGACATCAACAACCGAGTCCAGCAGACTGTGTCTACATTTC 49976
|||||| |||||| | ||||| || || | |||||| ||| ||| || || |
Sbjct 2065 TCAACATCGAGCAGTACCAGGACATTAAGAAGCAGGTCCAGGTGACGACGTCCACCTTCC 2006
Query 49977 ATCAGTGGAACGGTGTAGCCAGTCATGTGGTGCCCTTTATATTGGCCTTTTTCCTAGGAT 50036
| ||||||||| | |||| | ||||| || | || ||||| | || || ||
Sbjct 2005 ACCAGTGGAACAACATCGCCATGTACGTGGTACCGATCGTACTGGCCCTGTTTCTCGGCG 1946
Query 50037 CCTATAGTGATAGGCGCGGTAGAAAGATTGTACTCGTATGTGGACTCGTAGGTAAACTCT 50096
||| ||| | || || | || || ||| | ||||| | || || |
Sbjct 1945 CCTGGTCCGATCGCCGTGGGCGCAAACTTCCCCTCATCCTCGGACTGATCGGGAAGTTTG 1886
Query 50097 TTTTCTCGGCAATGCTAACCGTAAACAGTCTCA---AGAGCTGGCCCGTAGAGTATATAA 50153
| | ||||| ||| | || |||| | || | |||||||| ||||| || |
Sbjct 1885 TCTACTCGGTGATGATCGTGGTGAACACGCGCATGCCGTCGTGGCCCGTGGAGTACATCA 1826
Query 50154 TCTACACGGCATCCTTTCCGAGTGCACTCACCGGAGCCGATTTGACCATATTCGCAGCGT 50213
||||||| ||| || | ||||| | || ||||| || ||| | | || ||||| | |
Sbjct 1825 TCTACACCGCAACCATCCCGAGCGTGCTGACCGGGGCGGATATTGCAATCTTCGCGTCCT 1766
Query 50214 GCTTTGCCTACATTGCCGATGTGTCGACTGTGGAGAATCGCACGCTACGAGTGGGCATCT 50273
|||| || ||||| |||| | |||| || ||| | || ||||| || | ||
Sbjct 1765 GCTTCGCGTACATCTCCGACATCACGACGGTCGAGGAGCGGACGCTGCGCATCACGATAC 1706
Query 50274 TGGATGCCGTCTACCTGAGCACGATGCCAACCGGTGTGGCGATCGGTAGTGTGCTGTGGA 50333
|||| || |||||||||||||||||| | ||| || ||| |||||| |||| | | |
Sbjct 1705 TGGACGCGACCTACCTGAGCACGATGCCGATCGGGGTCGCGCTCGGTAATGTGATCTTCA 1646
Query 50334 AGCGATTCCG----ATCCTACCCCATCATGTTTGCAATCAA 50370
| | || | | ||| ||| | |||||||| | |||||
Sbjct 1645 ATC-ATACGGGCAAATCGTACACGATCATGTTCACCATCAA 1606
>seq2530
Length=9775
Score = 104 bits (114), Expect = 3e-17
Identities = 229/336 (68%), Gaps = 8/336 (2%)
Strand=Plus/Minus
Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126
|| ||| |||| || |||||||| || || ||| | |||| || |||| || |
Sbjct 1772 GGTGATTTGGGACCTGTGTACGGTTTTCAATGGCGCCACTTTGGGGCCAAATACAAAACG 1713
Query 70127 TGCGA-GACAGACTATTCGGGTCAGGGTGTTGATCAATT-GCAGACAATCATTGACACTC 70184
||| | ||| || || | || || || | || ||| | ||||| | || ||||
Sbjct 1712 TGCCATGAC-GATTACACTGGGCAAGGGATAGACCAACTCGCAGAGG-TAATCGACAAGA 1655
Query 70185 TCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGC 70244
| || | ||| || ||| | | ||| | ||| || | |||||||| | ||| | |
Sbjct 1654 TTAAAAACAACCCGTACGATCGTCGAATCATCATGAGCGCCTGGAATCCGTCCGATATCC 1595
Query 70245 ACCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTACTCGT--ACGATGGCAA 70302
| | ||||| || ||||| ||||| ||||||||||| |||| | || || | || |
Sbjct 1594 CCAATATGGCTCTTCCACCTTGTCATTGTTTGGCTCAATTTT--TTGTTGACAACGGAGA 1537
Query 70303 ATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACAT 70362
||| |||||| |||||||| || ||||| ||||| | |||||||| || |||||
Sbjct 1536 ATTATCATGCCAGATGTATCAACGGTCGGCCGATGTGGGCTTGGGTGTACCATTCAACAT 1477
Query 70363 TGCAAGCTATTCTATGTTGACGCACATGATTGCTCA 70398
|||||||| || || | || || ||||| || ||
Sbjct 1476 CGCAAGCTACTCGTTGCTTACCCATATGATCGCGCA 1441
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 740670838663000
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