Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20koliensis_20[genbank_20GCA_5F000956275.1_202015-03-19] 41,925 sequences; 151,110,088 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq30436 109 1e-18 seq35382 98.7 2e-15 >seq30436 Length=6135 Score = 109 bits (120), Expect = 1e-18 Identities = 180/260 (69%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 165095 ACCGATAAGGATGAATGGAATACTTGGAATAAAATACACGATCCTGTTTTACATATAGAG 165154 |||||| ||||||||||| | ||| | || | |||||| || ||||||||||| Sbjct 3625 ACCGATCAGGATGAATGGTCATCCTGGCAGAAGCGAGGCGATCCGGTCCTACATATAGAG 3566 Query 165155 CTAAGAAGATGGGCAGATATGATGTTGATAGCACCCTTAACAGCAAACAGTTTAGCGAAG 165214 || | | |||||| ||| || | ||||||| || | || |||||| | |||||| Sbjct 3565 CTCGGCAAATGGGCCGATTTGCTCGTGATAGCCCCGCTCGATGCGAACAGTCTGGCGAAG 3506 Query 165215 ATAGCTAACGGTATCTGTAATAACTTGTTAACGTGTATAGTTAGAGCGTGGAATATTAAT 165274 || || ||||| | || | || ||| | ||||| | || ||| || Sbjct 3505 ATGGCGAACGGGTTGTGCGACAATTTGCTGCTGTGTACGACCCGTGCCTGGGATCCAGCC 3446 Query 165275 AAACCTTTACTTTTCTGTCCAGCTATGAATACACTTATGTGGGAACATCCTATTACTGAG 165334 |||||| | || ||||||||||| ||||| || | |||||| | ||||| || || ||| Sbjct 3445 AAACCTCTGCTCTTCTGTCCAGCGATGAACACGCGCATGTGGCAGCATCCAATCACCGAG 3386 Query 165335 CAGCATATAGAAACTCTTAA 165354 | ||| || ||||| ||||| Sbjct 3385 CGGCAGATCGAAACGCTTAA 3366 >seq35382 Length=6325 Score = 98.7 bits (108), Expect = 2e-15 Identities = 223/330 (68%), Gaps = 4/330 (1%) Strand=Plus/Plus Query 238558 AACAGCTCGAGAGAGCCGAAACTCACGATCCCCTATGGAATTCCGCCCAGATACAAATGG 238617 || |||| || | ||| | || ||||| ||| ||||| | || ||| | || ||| Sbjct 3580 AAGAGCTAGAAACTGCCCACACCCACGACGACCTGTGGAACGCAGCTCAGCTGCAGCTGG 3639 Query 238618 TAAGACTAGGCAAA-ATGCATAGTTTCTTACGAATGTATTGGGCTAAAAAGATACTTGAA 238676 | | | |||| || ||||| | ||| | || ||||||||||| || || ||||| || Sbjct 3640 TGA-AGGAGGCCAAGATGCACGGGTTCCTGCGCATGTATTGGGCGAAGAAAATACTCGAG 3698 Query 238677 TGGACTAGATCTCCAAAGGAAGCTCTTAGATATAGT-ATTTATCTGAACGATAAATACGA 238735 ||||| | | | || ||||||| || || | | || |||||||||||| ||| Sbjct 3699 TGGACGAAAACGCCCGAGGAAGCGCTC-GAAACGGCCATCTATCTGAACGATCGCTACAG 3757 Query 238736 ACTCGACGGTACGGATCCTAACGGATACGTAGGTTGTATGTGGTCAATATGTGGATTACA 238795 || || || ||||| ||||||||||| || || |||||||| || || | || Sbjct 3758 CCTGGATGGGCGCGATCCGAACGGATACGTCGGGTGCATGTGGTCGATCGCCGGCATCCA 3817 Query 238796 CGATAGGGCATGGTCTGAGAGACCTATATTTGGAAAAGTTAGATACATGAATTATGAAGG 238855 ||| || |||| ||| | || ||||| ||| || | |||||||| || || || Sbjct 3818 TGATCAGGGATGGAAGGAGCGGGAAATTTTTGGCAAAATTCGCTACATGAACTACGACGG 3877 Query 238856 AACTAAGAAAAAATTTGATGTAAATGCTTT 238885 ||| ||| ||||| || || || || Sbjct 3878 CTGCAAGCGAAAGTTTGACGTGAACGCGTT 3907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150779910157900