Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20koliensis_20[genbank_20GCA_5F000956275.1_202015-03-19] 41,925 sequences; 151,110,088 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq41190 114 3e-20 seq20716 89.7 1e-12 >seq41190 Length=4563 Score = 114 bits (126), Expect = 3e-20 Identities = 230/341 (67%), Gaps = 0/341 (0%) Strand=Plus/Plus Query 72417 CAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACT 72476 || ||||| |||| || | ||||| || ||| |||| || |||| ||||| ||| Sbjct 822 CAGGCGTCCACGTCCGAACTCTATGGTAAGGTGGTCGAAACGCCGCAGAACGAAAAAACT 881 Query 72477 CCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAAA 72536 || || ||||| || || |||| | |||||| |||||| || ||||| | Sbjct 882 CCATTCTATCCGCGCTCGCCGTACGCTTGTGCAAAAATGTACGGCTACTGGATAGTGATC 941 Query 72537 AATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATCACGAGAGT 72596 |||||||| ||| |||| ||||||| || |||||| ||| ||||| |||||| Sbjct 942 AATTACCGCGAGGCGTACAACATGTTTGCCTGCAACGGTATTCTCTTCAACCACGAGTCG 1001 Query 72597 CCCAACAGAGGCCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGAATATTTTC 72656 ||| | || | | || ||||| || |||||||| ||| ||||| |||| Sbjct 1002 CCCCGGCGGGGTGAGAACTTTGTGACACGCAAAATCACTCGCTCGGTGGCGAAGATTTCG 1061 Query 72657 AATGGTGTCGAAAAATGCATGTATCTCGGTAATATAGATGCCAAAAGAGATTGGGGATAT 72716 || | | ||| | | ||||||||| | ||| | || | || ||||| | Sbjct 1062 CTCGGCCAGCAGGAGTGCGTCGAGCTCGGTAATCTCGATTCGAAGCGTGACTGGGGCCAC 1121 Query 72717 GCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACA 72757 || || || ||||| |||||||||||||||||| |||| || Sbjct 1122 GCAAAAGACTACGTCGAAGCAATGTGGTTGATGATGCAGCA 1162 >seq20716 Length=12815 Score = 89.7 bits (98), Expect = 1e-12 Identities = 110/149 (74%), Gaps = 6/149 (4%) Strand=Plus/Plus Query 288328 TGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGG 288384 || || || ||||||||||||||||| || |||| ||||| || || || |||||| Sbjct 14 TGCTTGCCGGCGAAGATCAGACGCTGCTG---ATCTGGCGGGATACCCTCCTTGTCCTGG 70 Query 288385 ATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTC 288444 || ||||| ||||| || || || | ||| | || || || || || || ||||| Sbjct 71 ATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATGGTCTTA 130 Query 288445 CCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || |||||||| |||||||| Sbjct 131 CCCGTGAGGGTTTTGACGAAGATCTGCAT 159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179020732050150