Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20koliensis_20[genbank_20GCA_5F000956275.1_202015-03-19] 41,925 sequences; 151,110,088 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq16794 114 2e-20 seq10535 109 7e-19 seq41190 91.5 2e-13 >seq16794 Length=6728 Score = 114 bits (126), Expect = 2e-20 Identities = 204/292 (70%), Gaps = 8/292 (3%) Strand=Plus/Plus Query 175901 GTGAAGATGTACCTCGTTTGAGACGC-ATCTTTGCCACCCATGAGACGCGTCCCAAATTG 175959 |||||||||||||||| | ||| ||| ||||| ||| | || ||||| || || || Sbjct 367 GTGAAGATGTACCTCG-GGCTGGCGCTATCCTTGCCGCCCGTCAGCCGCGTACCGAACTG 425 Query 175960 ACCACATGGCTCAAGGAGATTGATATTGTTTGAGCCCATATAGTCATTCGCCAACTTGAC 176019 ||| | || | || || ||||| ||||| ||||| |||| | ||||| |||| Sbjct 426 ACCGCCCGGGTACAGCAGGTTGATGTTGTTACTGCCCACGTAGTTCTGCGCCAGGTTGAT 485 Query 176020 AATCGTATCCGCG-AGGGAGACT--TCACCGTGATGGTAGGCCGACTTGTCCGCCACATA 176076 ||||| || | || | |||| || ||||| |||||||| ||| | |||||||| | Sbjct 486 GATCGT---CGAGCAGAGCGACTGCTCGCCGTGGTGGTAGGCGGACATTTCCGCCACCGA 542 Query 176077 CGCCGCCAACTGCGCCACCTTCATCTCATCCTTGAGGTTCTTGTGGAAGCACGCATACAT 176136 |||||| ||| |||||||||| ||| |||| ||| | |||||||| ||| Sbjct 543 GCCCGCCAGCTGGGCCACCTTCACCTCGCGCTTGTCGTTGCGCTTGAAGCACGTGAACAG 602 Query 176137 GACCTTTCTCTGTGAAGGCTTGAGGCCGTCGGCCATGTGTGCGATGGAACGC 176188 ||||| | ||| ||||| || ||||| |||| | ||| |||||| Sbjct 603 CACCTTCCGCTGGCCCGGCTTCAGCCCGTCCAGCATGCACGGGATCGAACGC 654 >seq10535 Length=3010 Score = 109 bits (120), Expect = 7e-19 Identities = 120/160 (75%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 127519 AGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 127578 |||||| || ||| || |||||||| || ||||| || ||||||||||| ||| || Sbjct 210 AGCAAAGTCACAGTGCAGTCCCTCGTCGCGCGAGATCAGCTCATTCGAGAATGTCAGCCC 269 Query 127579 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 127638 ||||| || || |||||||||| |||||| || || ||| |||| ||||||||| Sbjct 270 CGGCATCAGGCCGCGCTTCTTCAGCCAGAAGATGGCCGCAAAGCTGCCACTGAAGAAGAT 329 Query 127639 CCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAG 127678 ||||| || |||||||||| | |||||| ||||| Sbjct 330 ACCCTCAACTGCAGCGAACGCAACCACACGCTCCCCAAAG 369 >seq41190 Length=4563 Score = 91.5 bits (100), Expect = 2e-13 Identities = 204/300 (68%), Gaps = 6/300 (2%) Strand=Plus/Plus Query 10552 TGGCTCGTGAAGAATTATCGCGAATCCTATGGTCTCTTTGTGTGCTCCGGTATTCTCTTC 10611 ||| | |||| ||||| ||||| | || | |||| ||| ||||||||||||| Sbjct 930 TGGATAGTGATCAATTACCGCGAGGCGTACAACATGTTTGCCTGCAACGGTATTCTCTTC 989 Query 10612 AACCACGAGTCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCAC-CGAT-GGTA 10669 ||||||||||| ||||| || || | | || |||||| || ||||| || | ||| Sbjct 990 AACCACGAGTCGCCCCGGCGGGGTGAGAACTTTGTGACACGCAAAATCACTCGCTCGGTG 1049 Query 10670 TCAAACAAATCGTGGCGGGTGAGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGA 10729 | || | || | || || ||||| | | || | || || ||| | | || Sbjct 1050 GCGAAGATTTC--GCTCGGCCAGCAGGAGTGCGTCGAGCTCGGTAATCTCGATTCGAAGC 1107 Query 10730 GGGACTGGGGACACGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTCCAACAAGAAG 10789 | |||||||| ||||| || ||||| || ||||| |||||| | | | || | ||||| Sbjct 1108 GTGACTGGGGCCACGCAAAAGACTACGTCGAAGCAATGTGGTTGATGATGCAGC-AGAAG 1166 Query 10790 -AGGCGGACGAATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTCGTTGAG 10848 || |||| || | ||| |||||||||| || || || || || | || || || ||| Sbjct 1167 CAGCCGGAAGATTTCGTCATCGCGACGGGCGAAACGCATTCGGTGCGAGAATTTGTCGAG 1226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613185683883000