Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20koliensis_20[genbank_20GCA_5F000956275.1_202015-03-19] 41,925 sequences; 151,110,088 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq10535 410 1e-109 seq14831 87.8 2e-12 >seq10535 Length=3010 Score = 410 bits (454), Expect = 1e-109 Identities = 519/704 (74%), Gaps = 12/704 (2%) Strand=Plus/Plus Query 132730 TCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCA-GACGCAC 132788 |||||||||||||| ||||| |||||||| |||||| || | || |||| | || || Sbjct 43 TCGGCCACGAACTCAATGTACTGCGACATTAGTTCGCAGTTCATGCCAAGCATGTCG-AC 101 Query 132789 CGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCT 132848 ||| || || | || || || |||||||| ||||||| ||| || ||| ||| | Sbjct 102 CGGAAGTGCCTTCGTCAGGAACTCCTGCTCGATCACGACCGCATCGCGGATGATCTCCGT 161 Query 132849 AACGCGCGCCGCGCTCGGCCGT---TGCACCAAATGCTTGAACATCAAGCAAGCAAAGTC 132905 |||||| || ||| | || ||||||| || | |||||||| |||||||||||| Sbjct 162 CACGCGCTCC---TTCGACGGTTTCTGCACCAGATACCGGAACATCAGGCAAGCAAAGTC 218 Query 132906 GCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAG 132965 || |||| |||||||| | || || || || || ||| |||| || ||||| || Sbjct 219 ACAGTGCAGTCCCTCGTCGCGCGAGATCAGCTCATTCGAGAATGTCAGCCCCGGCATCAG 278 Query 132966 GCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGAC 133025 |||||| || || ||||| || ||||| || || ||||| ||||||| ||||| || Sbjct 279 GCCGCGCTTCTTCAGCCAGAAGATGGCCGCAAAGCTGCCACTGAAGAAGATACCCTCAAC 338 Query 133026 GGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAG 133085 || ||||| || |||| ||||| || || | || | ||||||| ||||||| ||| Sbjct 339 TGCAGCGAACGCAACCACACGCTCCCCAAAGTTAGCCTTCTTGCTGGAGATCCAGTTCAG 398 Query 133086 CGCCCATTCGGCCTT-TTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGA 133144 |||||| |||||||| |||||| |||||||||| ||||||||| ||||| |||| | Sbjct 399 CGCCCAGTCGGCCTTCTTCTTT-ACGCACGGCAGCGTTTCGATCGCGTTGAACAGATACT 457 Query 133145 GTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTA 133204 ||| | || | || | ||| |||||||| || ||| |||||||| ||| | Sbjct 458 CCCGCTCCTTCGGGTCGCGTATGTACGTGTCGATCAGCAGCGAGTACATTTCGCTGTGCA 517 Query 133205 CGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTT 133264 |||||||||| || || ||||| ||||| ||||| || ||||| ||||||||| || | Sbjct 518 CGTTCTCCATCGCAATCTGAAACCCGTAGAAGCAGCGGGCCTCCGTCACCTGCACCTCCT 577 Query 133265 GAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCA 133324 | ||| ||||| |||||||| ||||| ||||| ||||| |||||||| ||||| | Sbjct 578 GGCTGAAGCGCTCCACCAGATTCTCGTTTACGATACCGTCCGACGCGGCGAAGAAGGCAA 637 Query 133325 GCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCG-CTCCCAGTCGCGCGTGTCC 133383 | |||||| |||||| || |||||| | | | |||| |||||||| | ||||| Sbjct 638 GTACGTGCGAGATGAAGTGACGCTCGCT-CGGCTTGAGCGATTCCCAGTCTTTCATGTCC 696 Query 133384 TTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGC 133427 || |||||||||||||| || || ||||| || || || || || Sbjct 697 TTCGACAGGTCCACCTCTTCCACCGTCCAGAAGGAAGCTTCCGC 740 >seq14831 Length=12387 Score = 87.8 bits (96), Expect = 2e-12 Identities = 91/117 (78%), Gaps = 2/117 (2%) Strand=Plus/Minus Query 38343 GAGGGAATTCCCGCC-GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGA 38401 |||||||| |||||| || || ||||| || || | ||| ||||| |||||||| |||| Sbjct 12386 GAGGGAAT-CCCGCCAGATCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGG 12328 Query 38402 GCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| || ||| ||||||||||| ||||| |||| |||| ||||| || || Sbjct 12327 ACGCACTCTGTCCGATTACAACATCCAGAAGGAGTCGACCTTGCACTTGGTTCTTCG 12271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499910678192000