Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20koliensis_20[genbank_20GCA_5F000956275.1_202015-03-19] 41,925 sequences; 151,110,088 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq10535 250 5e-61 seq15782 109 1e-18 >seq10535 Length=3010 Score = 250 bits (276), Expect = 5e-61 Identities = 474/697 (68%), Gaps = 3/697 (0%) Strand=Plus/Plus Query 47961 GATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACA 48020 |||| || ||| |||| ||||| | ||||| || | ||||||||| | | | | Sbjct 41 GATCGGCCACGAACTCAATGTACTGCGACATTAGTTCGCAGTTCATGCCAAGCATGTCGA 100 Query 48021 CGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCT 48080 | || | ||||| || || ||||||| ||| ||| || || || | | |||| | Sbjct 101 CCGGAAGTGCCTTCGTCAGGAACTCCTGCTCGATCACGACCGCATCGCGGATGATCTCCG 160 Query 48081 TAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGT 48140 | ||||| || || ||||| | ||| | | | | | || ||| ||||||| Sbjct 161 TCACGCGCTCCTTCGACGGTTTCTGCACCAGATACCGGA---ACATCAGGCAAGCAAAGT 217 Query 48141 CCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGA 48200 | | ||||| || ||||| || ||| ||| | || ||||| || || ||||| | Sbjct 218 CACAGTGCAGTCCCTCGTCGCGCGAGATCAGCTCATTCGAGAATGTCAGCCCCGGCATCA 277 Query 48201 CCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCA 48260 || | || || |||||||| || ||||| || |||| ||||||||| ||||| | Sbjct 278 GGCCGCGCTTCTTCAGCCAGAAGATGGCCGCAAAGCTGCCACTGAAGAAGATACCCTCAA 337 Query 48261 CTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAA 48320 |||| |||||||| | | ||| || || ||| |||||| ||||||||| | Sbjct 338 CTGCAGCGAACGCAACCACACGCTCCCCAAAGTTAGCCTTCTTGCTGGAGATCCAGTTCA 397 Query 48321 GCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCT 48380 |||||||||| ||||||||||| | ||| |||| ||| || || || ||| || | || Sbjct 398 GCGCCCAGTCGGCCTTCTTCTTTACGCACGGCAGCGTTTCGATCGCGTTGAACAGATACT 457 Query 48381 TGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCAGAGTGCA 48440 | ||| | ||| | || || || |||| | |||||| || ||||| Sbjct 458 CCCGCTCCTTCGGGTCGCGTATGTACGTGTCGATCAGCAGCGAGTACATTTCGCTGTGCA 517 Query 48441 CATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTG 48500 | ||||| || || ||||| |||||||||||| | |||||| ||||||||| || Sbjct 518 CGTTCTCCATCGCAATCTGAAACCCGTAGAAGCAGCGGGCCTCCGTCACCTGCACCTCCT 577 Query 48501 TGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAA 48560 | ||| | ||||| ||||||||| || || || || || || || || |||||||||| Sbjct 578 GGCTGAAGCGCTCCACCAGATTCTCGTTTACGATACCGTCCGACGCGGCGAAGAAGGCAA 637 Query 48561 GGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGTACGTCTT 48620 | || || | ||| || |||||| | | |||| | | |||| | | | ||| | Sbjct 638 GTACGTGCGAGATGAAGTGACGCTCGCTCGGCTTGAGCGATTCCCAGTCTTTCATGTCCT 697 Query 48621 TGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGC 48657 | ||||||||| |||||||| ||||||||||| || Sbjct 698 TCGACAGGTCCACCTCTTCCACCGTCCAGAAGGAAGC 734 >seq15782 Length=14063 Score = 109 bits (120), Expect = 1e-18 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 241489 CTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCA 241548 ||| ||| ||||||| || ||||||||| || ||| ||||| || || ||||| ||||| Sbjct 11016 CTTCAGCTCCTTCACCTTGTCCTCCAGCTTCGAGATCCGTTCGAGCTTCCGCCGCCGGCA 11075 Query 241549 TTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTC 241608 |||| ||| |||| ||||| || || | ||| || || ||||||||| ||||| Sbjct 11076 CTTGGAGGCGGCCACCCGGTTTCGTAGCCGCTTCCGCTCGAGCTTGATGCGCTCCTGCGA 11135 Query 241609 CTCCATGTCGATCGG 241623 ||||||||||||||| Sbjct 11136 CTCCATGTCGATCGG 11150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931044618592000