Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20koliensis_20[genbank_20GCA_5F000956275.1_202015-03-19] 41,925 sequences; 151,110,088 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq10535 118 1e-20 seq15908 91.5 2e-12 seq4789 89.7 6e-12 >seq10535 Length=3010 Score = 118 bits (130), Expect = 1e-20 Identities = 198/282 (70%), Gaps = 11/282 (4%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || |||||||| ||||| || || || | || || ||||| |||||||||||| Sbjct 229 CCCTCGTCGCGCGAGATCAGCTCATTCGAGAATGTCAGCCCCGGCATCAGGCCGCGCTTC 288 Query 869240 TTGAGCCAAAAGATGG-CGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 || ||||| ||||||| |||| || ||||| ||| ||||| ||||| || || || || Sbjct 289 TTCAGCCAGAAGATGGCCGCA-AAGCTGCCACTGAAGAAGATACCCTCAACTGCAGCGAA 347 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTT---GATCCACTTCATCGC 869355 | | | ||||| ||||| | || ||| |||| | |||||| |||| ||| Sbjct 348 CGCAACCACACGCTCCCCAAAGTT----AG--CCTTCTTGCTGGAGATCCAGTTCAGCGC 401 Query 869356 CCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTT 869415 |||||||||||| ||| | || |||||| ||| ||||| ||| || || | ||| Sbjct 402 CCAGTCGGCCTTCTTCTTTACGCACGGCAGCGTTTCGATCGCGTTGAACAGATACTCCCG 461 Query 869416 TTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATA 869457 || |||||| | || ||||||||||| ||||| || Sbjct 462 CTCCTTCGGGTCGCGTATGTACGTGTCGATCAGCAGCGAGTA 503 Score = 89.7 bits (98), Expect = 6e-12 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 869635 GTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGGAC 869694 ||| | |||||| || || ||||| || ||||| ||| | |||| | ||| || || Sbjct 513 GTGCACGTTCTCCATCGCAATCTGAAACCCGTAGAAGCAGCGGGCCTCCGTCACCTGCAC 572 Query 869695 CTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAAAA 869754 ||||| |||| || | |||| |||||| ||||| ||||| |||||||| || Sbjct 573 CTCCTGGCTGAAGCGCTCCACCAGATTCTCGTTTACGATACCGTCCGACGCGGCGAAGAA 632 Query 869755 AGCCAGGACGTGCTTGATAAAGTGGCGCTCG-TCGTCGCTGAGCGACACCCAGTGGACGG 869813 || || |||||| ||| ||||| |||||| ||| | ||||||| |||||| Sbjct 633 GGCAAGTACGTGCGAGATGAAGTGACGCTCGCTCGGCT-TGAGCGATTCCCAGTCTTTCA 691 Query 869814 TGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCT 869864 |||| ||||||||||| || | ||||||| || || || |||| Sbjct 692 TGTCCTTCGACAGGTCCACCTCTTCCACCGTCCAGAAGGAAGCTTCCGCCT 742 >seq15908 Length=4384 Score = 91.5 bits (100), Expect = 2e-12 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 509035 GCCCGAGAGCCGCGGCTTTGTGCGCAACTCGTACGAGCGCGGCCTCAACTCGCGCGAGAT 509094 ||||||| ||||| || ||| ||||||||| | ||| || | || |||| | Sbjct 91 GCCCGAGTCGCGCGGGTTCGTGGAAAACTCGTACCTGGCCGGGCTGACGCCGACCGAGTT 150 Query 509095 GTTTCTGCACATGATCGGCGGGCGCGAGGGCCTCGTCGACACGGCCGTCAAGACGGCCGA 509154 | | ||| ||| || || |||||||| | |||| || ||||||||||||||||| Sbjct 151 CTACTTCCACGCGATGGGTGGCCGCGAGGGTTTGATCGATACCGCCGTCAAGACGGCCGA 210 Query 509155 GACGGGCTACATCCAGCGCCGGTGCATCAAGTCGATGGAG 509194 || |||||||||||||| || |||||| |||||||| Sbjct 211 AACCGGCTACATCCAGCGGCGTCTGATCAAGGCGATGGAG 250 >seq4789 Length=12371 Score = 89.7 bits (98), Expect = 6e-12 Identities = 195/284 (69%), Gaps = 20/284 (7%) Strand=Plus/Minus Query 507598 GGTCGAGCGCCACCTGCGCGCGGGCGACGCCGTGGTGATG---AACCGGCAGCCGTCGCT 507654 ||| |||||||||||||||| ||||| |||| || ||||| ||||| |||| Sbjct 1018 GGTGGAGCGCCACCTGCGCGA---CGACGATCTGGTCATTTTCAACCGTCAGCCAACGCT 962 Query 507655 GCACATGGGCTCCATGCTCATGCACAAGGTG---GTGCCCATGCCCGGGCGCACCATGCG 507711 ||||| | |||| | ||| |||| |||| |||| || ||| | || Sbjct 961 GCACAAGATGAGCATGATGGGGCATCGGGTGAAGGTGC---TGCCGTGGTCCACGTTCCG 905 Query 507712 ATTCAACCTG-GCCGTCACGGGCACC-TACAACGCCGACTTTGACGGCGACGAGATGAAC 507769 | ||||| || || | |||| |||||||||||||| || || |||||||||||| Sbjct 904 GATGAACCTCAGCTGTACCT--CACCGTACAACGCCGACTTCGATGGTGACGAGATGAAC 847 Query 507770 CTGCACGTGCCCCAGTCCGAGACGGCGCGCGCCGAGGTGACGCACACCAT--GAGCGTGT 507827 ||||||||||| ||||| | | ||||||| ||| | || | || | | | | Sbjct 846 CTGCACGTGCCGCAGTCGATGGAGACGCGCGCGGAGAT--CGAAAACATTCACATCACGC 789 Query 507828 CGCTCAAGACCGTGTCGCCGCAGGCCAACAAGCCCATCATCGGC 507871 ||| | ||| | | |||||||||| ||||| ||| |||| ||| Sbjct 788 CGCGCCAGATCATTACGCCGCAGGCGAACAAACCCGTCATGGGC 745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6103698638165225