Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20koliensis_20[genbank_20GCA_5F000956275.1_202015-03-19] 41,925 sequences; 151,110,088 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq35382 123 2e-23 seq34660 84.2 2e-11 >seq35382 Length=6325 Score = 123 bits (136), Expect = 2e-23 Identities = 222/319 (70%), Gaps = 4/319 (1%) Strand=Plus/Plus Query 44103 CTAGAGACGGCCTCCACCCATGATCCTTTGTGGAACGCTGCCCAAACACAACTGTTGCGA 44162 ||||| || ||| |||||| || |||||||||| || || || ||| || Sbjct 3585 CTAGAAACTGCCCACACCCACGACGACCTGTGGAACGCAGCTCAGCTGCAGCTGGTGAAG 3644 Query 44163 GAAGGTAAAATGCACCAATACATGCGTATGTATTGGTGCAAGAAGATATTGGAGTGGTCG 44222 || | || |||||| | | |||| ||||||||| ||||| ||| | |||||| || Sbjct 3645 GAGGCCAAGATGCACGGGTTCCTGCGCATGTATTGGGCGAAGAAAATACTCGAGTGGACG 3704 Query 44223 GAAGATGCGCAAACC-GCGCTCGTTCATGCCATCTATCTGAACGACAAGTACAGTTTGGA 44281 || | || | | ||||||| ||||||||||||||||| ||||| |||| Sbjct 3705 AAA-ACGCCCGAGGAAGCGCTCGAAACGGCCATCTATCTGAACGATCGCTACAGCCTGGA 3763 Query 44282 CGGTCGCGACCCCAACGGGTACGTAGGATGTATGTGGTCCATTTGCGGTGTCCACGA-CA 44340 || ||||| || ||||| ||||| || || |||||||| || ||| |||| || || Sbjct 3764 TGGGCGCGATCCGAACGGATACGTCGGGTGCATGTGGTCGATCGCCGGCATCCATGATCA 3823 Query 44341 GGGCGTGGCGAGAGCTACCCATCTACGGCAAAGTGCGCTACATGAACTACAACGGTTGCG 44400 ||| ||| |||| || | |||||| | ||||||||||||||| |||| ||| Sbjct 3824 GGG-ATGGAAGGAGCGGGAAATTTTTGGCAAAATTCGCTACATGAACTACGACGGCTGCA 3882 Query 44401 TCAGAAAGTTTGATGTAAA 44419 |||||||||| || || Sbjct 3883 AGCGAAAGTTTGACGTGAA 3901 >seq34660 Length=3128 Score = 84.2 bits (92), Expect = 2e-11 Identities = 164/240 (68%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 41194 TGCGCGACACGATCACCCTTCATCACCACAAAGTCCACGTCGTTGTTGTTCACCATCACT 41253 ||||| | ||||||||||||| |||| | || ||||| ||| || ||| | || ||| Sbjct 1545 TGCGCAATACGATCACCCTTCTTCACTTCGAAATCCACCTCGGAGTGGTTGAACAGCACA 1604 Query 41254 ATGCCCACGTTGCCCGTGTAGTCGGGATCGATGACGCCAGCAGCAATGTCGATCTTGTGC 41313 | || ||||| ||| |||||| || | |||||| || | | ||||| || Sbjct 1605 ACACCAACGTTTCCCCGGTAGTCCTCGTCAACGACGCCTGCCCCCACATCGATGAAGTTT 1664 Query 41314 TTCAACGCCAGCCCCGATCGGGGCGCGATCCTACCGTAACAATCTTTGGGCAGCTGCAGA 41373 |||| ||||||||| || || || || | | |||||||| ||| || | ||||| Sbjct 1665 TTCACCGCCAGCCCGGAGCGTGGTGCTACACGCCCGTAACAGCCTTCCGGTACCTGCACC 1724 Query 41374 GCAATGTCCGTCTTGATCAGCGTGCGGTCGTGGCGC-GGAACGATGTAGTCGTAGGCGCT 41432 ||||| ||| | | ||| ||| | | | || || || |||| ||||||||||| Sbjct 1725 TGGATGTCGGTCATTACGAGC-TGCTTGCCTCGAGCGGGTACCGTGTAATCGTAGGCGCT 1783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450557355979000