Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20koliensis_20[genbank_20GCA_5F000956275.1_202015-03-19] 41,925 sequences; 151,110,088 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq16794 111 2e-19 seq10535 109 7e-19 seq41190 87.8 2e-12 >seq16794 Length=6728 Score = 111 bits (122), Expect = 2e-19 Identities = 203/292 (70%), Gaps = 8/292 (3%) Strand=Plus/Plus Query 179038 GTGAAGATGTACCTCGTTTGAGACGC-ATCTTTGCCACCCATGAGACGCGTCCCAAATTG 179096 |||||||||||||||| | ||| ||| ||||| ||| | || ||||| || || || Sbjct 367 GTGAAGATGTACCTCG-GGCTGGCGCTATCCTTGCCGCCCGTCAGCCGCGTACCGAACTG 425 Query 179097 ACCACATGGCTCAAGGAGATTGATATTGTTTGAACCCATGTAGTCATTGGCCAACTTGAC 179156 ||| | || | || || ||||| ||||| |||| ||||| | |||| |||| Sbjct 426 ACCGCCCGGGTACAGCAGGTTGATGTTGTTACTGCCCACGTAGTTCTGCGCCAGGTTGAT 485 Query 179157 AATCGTATCCGCG-AGGGAGACT--TCACCGTGATGGTAAGCCGACTTGTCCGCCACATA 179213 ||||| || | || | |||| || ||||| ||||| || ||| | |||||||| | Sbjct 486 GATCGT---CGAGCAGAGCGACTGCTCGCCGTGGTGGTAGGCGGACATTTCCGCCACCGA 542 Query 179214 TGCCGCCAACTGCGCCACCTTCATCTCATCCTTGAGGTTCTTGTGGAAGCACGCATACAT 179273 |||||| ||| |||||||||| ||| |||| ||| | |||||||| ||| Sbjct 543 GCCCGCCAGCTGGGCCACCTTCACCTCGCGCTTGTCGTTGCGCTTGAAGCACGTGAACAG 602 Query 179274 CACCTTTCTTTGTGAAGGCTTGAGGCCGTCGGCCATGTGCGCGATGGAACGC 179325 |||||| | || ||||| || ||||| |||| || ||| |||||| Sbjct 603 CACCTTCCGCTGGCCCGGCTTCAGCCCGTCCAGCATGCACGGGATCGAACGC 654 >seq10535 Length=3010 Score = 109 bits (120), Expect = 7e-19 Identities = 166/234 (71%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075 ||||| || ||| || |||||||| || ||||| || ||||||||||| ||| || Sbjct 211 GCAAAGTCACAGTGCAGTCCCTCGTCGCGCGAGATCAGCTCATTCGAGAATGTCAGCCCC 270 Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135 ||||| || || |||||||||| |||||| || || ||| |||| ||||||||| Sbjct 271 GGCATCAGGCCGCGCTTCTTCAGCCAGAAGATGGCCGCAAAGCTGCCACTGAAGAAGATA 330 Query 130136 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAG-GAGCGGGACTTTGTATCAAA 130194 ||||| || |||||||||| | |||||| ||||| ||| ||| | | Sbjct 331 CCCTCAACTGCAGCGAACGCAACCACACGCTCCCCAAAGTTAGC-CTTCTTGCTGGAGAT 389 Query 130195 CCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 130248 ||| |||| |||||| | ||||| |||| | ||||| | || | |||||| Sbjct 390 CCAGTTCAGCGCCCAGTCGGCCTTCTTCTTTACGCACGGCAGCGTTTCGATCGC 443 >seq41190 Length=4563 Score = 87.8 bits (96), Expect = 2e-12 Identities = 203/300 (68%), Gaps = 6/300 (2%) Strand=Plus/Plus Query 11913 TGGCTCGTGAAGAATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCTGGTATTCTCTTC 11972 ||| | |||| |||||||| || | || | ||||| ||| |||||||||||| Sbjct 930 TGGATAGTGATCAATTACCGCGAGGCGTACAACATGTTTGCCTGCAACGGTATTCTCTTC 989 Query 11973 AACCACGAGTCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCAC-CGAT-GGTA 12030 ||||||||||| ||||| || || | | || |||||| || ||||| || | ||| Sbjct 990 AACCACGAGTCGCCCCGGCGGGGTGAGAACTTTGTGACACGCAAAATCACTCGCTCGGTG 1049 Query 12031 TCAAACAAATCGTGGCGGGTGAGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGA 12090 | || | || | || || ||||| | | || | || || ||| | | || Sbjct 1050 GCGAAGATTTC--GCTCGGCCAGCAGGAGTGCGTCGAGCTCGGTAATCTCGATTCGAAGC 1107 Query 12091 GGGACTGGGGACATGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTTCAACAAGAAG 12150 | |||||||| || || || ||||| || ||||| |||||| | | | || | ||||| Sbjct 1108 GTGACTGGGGCCACGCAAAAGACTACGTCGAAGCAATGTGGTTGATGATGCAGC-AGAAG 1166 Query 12151 -AGGCGGACGAATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTCGTTGAG 12209 || |||| || | ||| |||||||||| || || || || || | || || || ||| Sbjct 1167 CAGCCGGAAGATTTCGTCATCGCGACGGGCGAAACGCATTCGGTGCGAGAATTTGTCGAG 1226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618111101303000