Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20koliensis_20[genbank_20GCA_5F000956275.1_202015-03-19] 41,925 sequences; 151,110,088 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq41190 138 1e-27 seq16794 138 1e-27 >seq41190 Length=4563 Score = 138 bits (152), Expect = 1e-27 Identities = 269/393 (68%), Gaps = 11/393 (3%) Strand=Plus/Minus Query 124509 TGCGTCTCACCCGTGCCAATCACGAAATCTTCGGGAATCGACTGCTGCAACATAAGCCAC 124568 ||||| || ||||| | || ||||||||||| || | |||||||| ||| | |||| Sbjct 1204 TGCGTTTCGCCCGTCGCGATGACGAAATCTTCCGGCTGCTTCTGCTGCATCATCAACCAC 1145 Query 124569 ATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTTGGCATCCAGGTTTCCGAGC 124628 || |||| ||||||||| | |||||| |||||||| ||||| | ||| || || |||||| Sbjct 1144 ATTGCTTCGACGTAGTCTTTTGCGTGGCCCCAGTCACGCTTCGAATCGAGATTACCGAGC 1085 Query 124629 TCGATTGGCT-----TGGCCG-TCTTGTTCCACTCCGCCAAACCCAGTGTAATCTTGCGC 124682 |||| || |||||| | || | || || | | | || || ||||| Sbjct 1084 TCGACGCACTCCTGCTGGCCGAGCGAAATCTTCGCCACCGAGC---GAGTGATTTTGCGT 1028 Query 124683 GTCACAAACTCGGAACCGCGTCGCTCAGACTCGTGGTTGAACAGAATGCCAGTACACGCA 124742 |||||||| | ||| || || |||||||||||||| ||||| || | || ||| Sbjct 1027 GTCACAAAGTTCTCACCCCGCCGGGGCGACTCGTGGTTGAAGAGAATACCGTTGCAGGCA 968 Query 124743 AACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCAATACCCAAAGA-GCTTGGACAC 124801 ||||| ||||| ||||||||| || || ||||| || || | | ||| ||| Sbjct 967 AACATGTTGTACGCCTCGCGGTAATTGATCACTATCCAGTAGCCGTACATTTTTGCACAA 908 Query 124802 GCCATAGGGGCTTCGGGGGTAGAATGGGGTGTTTTCATTTTGGGTAGGTTGCTGAATCTT 124861 | | || || || || |||||||| || ||||| || || | | || | ||| Sbjct 907 G-CGTACGGCGAGCGCGGATAGAATGGAGTTTTTTCGTTCTGCGGCGTTTCGACCACCTT 849 Query 124862 CCCAAACATCTCCGAAGTACCCGCCTGATAGAA 124894 ||| | | || || || |||||||||||| Sbjct 848 ACCATAGAGTTCGGACGTGGACGCCTGATAGAA 816 Score = 118 bits (130), Expect = 1e-21 Identities = 196/281 (70%), Gaps = 3/281 (1%) Strand=Plus/Minus Query 158959 TGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGCTGTTGGAGCATGAGCCAC 159018 ||||| || || ||||| || || || || || || ||| || | ||| | |||| Sbjct 1204 TGCGTTTCGCCCGTCGCGATGACGAAATCTTCCGGCTGCTTCTGCTGCATCATCAACCAC 1145 Query 159019 ATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGCATCCATGTTCCCGAGC 159078 || || |||||||| || | ||||| |||||||| ||||| | ||| | || |||||| Sbjct 1144 ATTGCTTCGACGTAGTCTTTTGCGTGGCCCCAGTCACGCTTCGAATCGAGATTACCGAGC 1085 Query 159079 TCGATG-ACTTTTCCAGACTTTTTCCACTCAGCCAGACCGAGCG--TGATCTTGCGCGTC 159135 |||| | ||| | | | | | || | |||||||| |||| ||||| ||| Sbjct 1084 TCGACGCACTCCTGCTGGCCGAGCGAAATCTTCGCCACCGAGCGAGTGATTTTGCGTGTC 1025 Query 159136 ACAAACTCTGCTCCGCGCCGTTCCGACTCATGGTTAAACAGAATGCCGGTACAAGCGAAC 159195 ||||| | | || ||||| |||||| ||||| || ||||| ||| | || || ||| Sbjct 1024 ACAAAGTTCTCACCCCGCCGGGGCGACTCGTGGTTGAAGAGAATACCGTTGCAGGCAAAC 965 Query 159196 AGGTTATAGGACTCGCGGTAATTTTTAGTTATCCAGTATCC 159236 | ||| || | |||||||||||| | ||||||||| || Sbjct 964 ATGTTGTACGCCTCGCGGTAATTGATCACTATCCAGTAGCC 924 >seq16794 Length=6728 Score = 138 bits (152), Expect = 1e-27 Identities = 283/417 (68%), Gaps = 9/417 (2%) Strand=Plus/Plus Query 152742 CAGCTTCGGCCAGTACACGTGGAACATGTTGAGGACCAAGCCCTTGATGTGCGATCCGTC 152801 ||| | |||||||| | ||||| | ||| | | || |||||||||||||| || || Sbjct 1101 CAGTTCCGGCCAGTTCGTGTGGATGAAGTTAATCAGCAGCCCCTTGATGTGCGACCCATC 1160 Query 152802 AAGATCCGCGTCGGTCATGATCATCAGACGACCGTAGCGCAGG----TCACGTAGTGACC 152857 ||||| || ||||||||||||| |||||| ||||| ||| | || Sbjct 1161 CTGATCCTGATCCGTCATGATCATCACCTTACCGTACCGCAGCGTCTTCAGATCGTCCGT 1220 Query 152858 CGT-AG--ACCTTTCCATGT--TGAAGCCCGAGGATCTTTTTGAGGTTGGAAAATTCCTC 152912 ||| || || | | | ||| || |||||||||||||| | |||||| | |||| | Sbjct 1221 CGTCAGGTACTTCTTCTTGTACTGCAGCCCGAGGATCTTGATCAGGTTGTTGATTTCCGC 1280 Query 152913 ATTATCGGTCACCTGTTTCACCGTGGCATCCCGAACATTGCGCGGCTTTCCCCGGAGTGG 152972 || || | ||| || ||| || ||||| || || || |||| || || || || Sbjct 1281 GTTCTCCAGGATCTGCTTGTGCGTCGCTTCCCGCACGTTCAGCAGCTTACCGCGCAGCGG 1340 Query 152973 AAACACGCCGAACGCGTTGCGGCCTACAACGCTCAGACCGGCAATAGCAAGGGCTTTCGC 153032 |||||| ||| ||| || ||| || || || | ||| || | | || | | ||| || Sbjct 1341 AAACACACCGTACGTGTCGCGACCGACCACCCCCAGCCCCGACACGGCCAACGTTTTGGC 1400 Query 153033 CGAGTCACCCTCGGTGATAATAAGCGTACAGTCGTGAGACCGATGAGTACCGGCCCAGTT 153092 |||||| |||||||| | || ||||| |||| | | || | | |||||| ||| Sbjct 1401 CGAGTCTCCCTCGGTCAGGATGAGCGTGCAGTTGAGCGAATTGCGCGAACCGGCATCGTT 1460 Query 153093 GGCGTCGTCAAGCTTGGGGATTCCCGTGATCCTGCTTTTCTTAGAGCCGTCGGTTTT 153149 ||||| || ||||| ||||| ||| | ||| | ||||| |||||| ||||| Sbjct 1461 CGCGTCCTCCAGCTTCGGGATGCCCTTTATCTTCGACTTCTTCGAGCCGGACGTTTT 1517 Score = 129 bits (142), Expect = 6e-25 Identities = 308/457 (67%), Gaps = 14/457 (3%) Strand=Plus/Plus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 ||||| |||||||| || |||||||||| ||| | ||||||||| || || || | Sbjct 214 CCGGTCCCGATGCCGTCCGCACCGTTGATCAGCAGCATCGGCACGATCGGCAGATACCAG 273 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCGGA 151995 |||| || | | || ||| || | ||| | || | | || ||| ||| Sbjct 274 ACCGGTTCGATGCGCTGGTTGTCCTCGTACTGGTACTCCAGCAGCGGATCGTCCAGCGGG 333 Query 151996 TCGAATATCCGTCGAGTCATAG--GAC-TCAAACGCGTGAAGATGTATCGGGAGCTGGCC 152052 | ||| || | || |||| | ||| ||| |||||||||||| | | |||||| Sbjct 334 TGGAAGATGCACCGCGTCAGGGCCGACATCAT---CGTGAAGATGTACCTCGGGCTGGCG 390 Query 152053 GCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGG 152112 ||||||||| || | ||||||||| || ||||| || || | || ||||||| | Sbjct 391 CTATCCTTGCCGCCCGTCAGCCGCGTACCGAACTGACCGCCCGGGTACAGCAGGTTGATG 450 Query 152113 TTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCT--T 152170 ||||| ||||||| | ||||| |||| || | ||||| | ||||| || | Sbjct 451 TTGTTACTGCCCACGTAGTTCTGCGCCAGGTTGATGATCGT--CGAGCAGAGCGACTGCT 508 Query 152171 CACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGT 152230 | |||||||| || || | | ||||| | | ||||||| ||| |||||||||| | Sbjct 509 CGCCGTGGTGGTAGGCGGACATTTCCGCCACCGAGCCCGCCAGCTGGGCCACCTTCACCT 568 Query 152231 C-CG-TCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAA 152288 | || | ||| ||| ||||| || | | | | |||||| |||||| || |||| Sbjct 569 CGCGCTTGTC--GTTGCGCTTGAAGCACGTGAACAGCACCTTCCGCTGGCCCGGCTTCAG 626 Query 152289 ACCGTCCACCACGTGAGGAATCGAACGCTTGATGTCC 152325 ||||||| || | || ||||||||| | ||||| Sbjct 627 CCCGTCCAGCATGCACGGGATCGAACGCACGTTGTCC 663 Score = 125 bits (138), Expect = 8e-24 Identities = 206/297 (69%), Gaps = 0/297 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| ||||| | | ||| || ||||||||| || | || ||||||||||| || Sbjct 367 GTGAAGATGTACCTCGGGCTGGCGCTATCCTTGCCGCCCGTCAGCCGCGTACCGAACTGA 426 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || | ||| | || ||||| | |||||| |||||| |||| || |||| ||||| Sbjct 427 CCGCCCGGGTACAGCAGGTTGATGTTGTTACTGCCCACGTAGTTCTGCGCCAGGTTGATG 486 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484 ||||| ||| | ||| || ||||| || || | | |||||||| ||||| Sbjct 487 ATCGTCGAGCAGAGCGACTGCTCGCCGTGGTGGTAGGCGGACATTTCCGCCACCGAGCCC 546 Query 117485 GCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACC 117544 |||||||| |||||||||| || | | ||| ||||| ||| | | | |||| Sbjct 547 GCCAGCTGGGCCACCTTCACCTCGCGCTTGTCGTTGCGCTTGAAGCACGTGAACAGCACC 606 Query 117545 TTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAACGCTTGATGTCC 117601 || ||||| | |||||||| || ||| || | |||||||||||| | ||||| Sbjct 607 TTCCGCTGGCCCGGCTTCAGCCCGTCCAGCATGCACGGGATCGAACGCACGTTGTCC 663 Score = 114 bits (126), Expect = 1e-20 Identities = 271/405 (67%), Gaps = 17/405 (4%) Strand=Plus/Plus Query 117983 GGCCAGTACACGTGGATCATGTTCAGCACGAGCCCCTTGATATGGGAACCGTCCAGATCC 118042 ||||||| | |||||| | ||| | || ||||||||||| || || || ||| ||||| Sbjct 1108 GGCCAGTTCGTGTGGATGAAGTTAATCAGCAGCCCCTTGATGTGCGACCCATCCTGATCC 1167 Query 118043 GCATCGGTCATGATCATCAGGCGGCCGTACCGTAAA-TCTCTCAG-------GGAGTTAT 118094 ||| ||||||||||||| |||||||| | ||| |||| | || | Sbjct 1168 TGATCCGTCATGATCATCACCTTACCGTACCGCAGCGTCT-TCAGATCGTCCGTCGTCAG 1226 Query 118095 AAACCTTACCATGT--TGGAGCCCGAGGATCTTTTTAAGGTTGGAAAATTCCTCATTTTC 118152 || | | ||| || |||||||||||||| | |||||| | |||| | || || Sbjct 1227 GTACTTCTTCTTGTACTGCAGCCCGAGGATCTTGATCAGGTTGTTGATTTCCGCGTTCTC 1286 Query 118153 CGTCACCTGTTTTATGGTGGCGTCCCGAACGTTGCGCGGCTTACCCCGCAGTGGAAACAC 118212 | | ||| || || || ||||| ||||| || ||||||| ||||| |||||||| Sbjct 1287 CAGGATCTGCTTGTGCGTCGCTTCCCGCACGTTCAGCAGCTTACCGCGCAGCGGAAACAC 1346 Query 118213 GCCAAACTTGTCACGGCCCACAACGCTCAAGCCGGCAATAGCAAGGGCCTTCGCCGAGTC 118272 || || |||| || || || || | || || | | || | | || |||||||| Sbjct 1347 ACCGTACGTGTCGCGACCGACCACCCCCAGCCCCGACACGGCCAACGTTTTGGCCGAGTC 1406 Query 118273 ACCCTCGGTAATAATAAGAGTGCACTCG---GTGCTGCGATGAGTACCGGCCCAATTAGC 118329 |||||||| | || || ||||| | | | ||| | | |||||| || || Sbjct 1407 TCCCTCGGTCAGGATGAGCGTGCAGTTGAGCGAATTGC---GCGAACCGGCATCGTTCGC 1463 Query 118330 ATCATCCAGCTTCGGAACGCCCGTAATGCGCGACTTTTTGGACCC 118374 || ||||||||||| | |||| | || |||||| || || || Sbjct 1464 GTCCTCCAGCTTCGGGATGCCCTTTATCTTCGACTTCTTCGAGCC 1508 Score = 86.0 bits (94), Expect = 7e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 119064 TAAATTTCGAACTGAACACGTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCA 119123 |||| || | ||||| | |||| ||||| |||||||| ||||| || |||||||||| Sbjct 2261 TAAACTTGGTGCTGAAGATGTTGCACAGCTTCGCACCGTACCCGTTGCGGCCACCGGTCA 2320 Query 119124 CGCGCTGCTCCTCGTCGTTGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGAT 119175 | || |||||| |||||||||||||| ||| | || ||||| ||||| Sbjct 2321 CCTTCTCCTCCTCATCGTTGTAGTTGGATGAGGTGAGCAGATGCCCGAAGAT 2372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546929224615000