Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20koliensis_20[genbank_20GCA_5F000956275.1_202015-03-19]
41,925 sequences; 151,110,088 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq41190 138 1e-27
seq16794 138 1e-27
>seq41190
Length=4563
Score = 138 bits (152), Expect = 1e-27
Identities = 269/393 (68%), Gaps = 11/393 (3%)
Strand=Plus/Minus
Query 124509 TGCGTCTCACCCGTGCCAATCACGAAATCTTCGGGAATCGACTGCTGCAACATAAGCCAC 124568
||||| || ||||| | || ||||||||||| || | |||||||| ||| | ||||
Sbjct 1204 TGCGTTTCGCCCGTCGCGATGACGAAATCTTCCGGCTGCTTCTGCTGCATCATCAACCAC 1145
Query 124569 ATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTTGGCATCCAGGTTTCCGAGC 124628
|| |||| ||||||||| | |||||| |||||||| ||||| | ||| || || ||||||
Sbjct 1144 ATTGCTTCGACGTAGTCTTTTGCGTGGCCCCAGTCACGCTTCGAATCGAGATTACCGAGC 1085
Query 124629 TCGATTGGCT-----TGGCCG-TCTTGTTCCACTCCGCCAAACCCAGTGTAATCTTGCGC 124682
|||| || |||||| | || | || || | | | || || |||||
Sbjct 1084 TCGACGCACTCCTGCTGGCCGAGCGAAATCTTCGCCACCGAGC---GAGTGATTTTGCGT 1028
Query 124683 GTCACAAACTCGGAACCGCGTCGCTCAGACTCGTGGTTGAACAGAATGCCAGTACACGCA 124742
|||||||| | ||| || || |||||||||||||| ||||| || | || |||
Sbjct 1027 GTCACAAAGTTCTCACCCCGCCGGGGCGACTCGTGGTTGAAGAGAATACCGTTGCAGGCA 968
Query 124743 AACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCAATACCCAAAGA-GCTTGGACAC 124801
||||| ||||| ||||||||| || || ||||| || || | | ||| |||
Sbjct 967 AACATGTTGTACGCCTCGCGGTAATTGATCACTATCCAGTAGCCGTACATTTTTGCACAA 908
Query 124802 GCCATAGGGGCTTCGGGGGTAGAATGGGGTGTTTTCATTTTGGGTAGGTTGCTGAATCTT 124861
| | || || || || |||||||| || ||||| || || | | || | |||
Sbjct 907 G-CGTACGGCGAGCGCGGATAGAATGGAGTTTTTTCGTTCTGCGGCGTTTCGACCACCTT 849
Query 124862 CCCAAACATCTCCGAAGTACCCGCCTGATAGAA 124894
||| | | || || || ||||||||||||
Sbjct 848 ACCATAGAGTTCGGACGTGGACGCCTGATAGAA 816
Score = 118 bits (130), Expect = 1e-21
Identities = 196/281 (70%), Gaps = 3/281 (1%)
Strand=Plus/Minus
Query 158959 TGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGCTGTTGGAGCATGAGCCAC 159018
||||| || || ||||| || || || || || || ||| || | ||| | ||||
Sbjct 1204 TGCGTTTCGCCCGTCGCGATGACGAAATCTTCCGGCTGCTTCTGCTGCATCATCAACCAC 1145
Query 159019 ATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGCATCCATGTTCCCGAGC 159078
|| || |||||||| || | ||||| |||||||| ||||| | ||| | || ||||||
Sbjct 1144 ATTGCTTCGACGTAGTCTTTTGCGTGGCCCCAGTCACGCTTCGAATCGAGATTACCGAGC 1085
Query 159079 TCGATG-ACTTTTCCAGACTTTTTCCACTCAGCCAGACCGAGCG--TGATCTTGCGCGTC 159135
|||| | ||| | | | | | || | |||||||| |||| ||||| |||
Sbjct 1084 TCGACGCACTCCTGCTGGCCGAGCGAAATCTTCGCCACCGAGCGAGTGATTTTGCGTGTC 1025
Query 159136 ACAAACTCTGCTCCGCGCCGTTCCGACTCATGGTTAAACAGAATGCCGGTACAAGCGAAC 159195
||||| | | || ||||| |||||| ||||| || ||||| ||| | || || |||
Sbjct 1024 ACAAAGTTCTCACCCCGCCGGGGCGACTCGTGGTTGAAGAGAATACCGTTGCAGGCAAAC 965
Query 159196 AGGTTATAGGACTCGCGGTAATTTTTAGTTATCCAGTATCC 159236
| ||| || | |||||||||||| | ||||||||| ||
Sbjct 964 ATGTTGTACGCCTCGCGGTAATTGATCACTATCCAGTAGCC 924
>seq16794
Length=6728
Score = 138 bits (152), Expect = 1e-27
Identities = 283/417 (68%), Gaps = 9/417 (2%)
Strand=Plus/Plus
Query 152742 CAGCTTCGGCCAGTACACGTGGAACATGTTGAGGACCAAGCCCTTGATGTGCGATCCGTC 152801
||| | |||||||| | ||||| | ||| | | || |||||||||||||| || ||
Sbjct 1101 CAGTTCCGGCCAGTTCGTGTGGATGAAGTTAATCAGCAGCCCCTTGATGTGCGACCCATC 1160
Query 152802 AAGATCCGCGTCGGTCATGATCATCAGACGACCGTAGCGCAGG----TCACGTAGTGACC 152857
||||| || ||||||||||||| |||||| ||||| ||| | ||
Sbjct 1161 CTGATCCTGATCCGTCATGATCATCACCTTACCGTACCGCAGCGTCTTCAGATCGTCCGT 1220
Query 152858 CGT-AG--ACCTTTCCATGT--TGAAGCCCGAGGATCTTTTTGAGGTTGGAAAATTCCTC 152912
||| || || | | | ||| || |||||||||||||| | |||||| | |||| |
Sbjct 1221 CGTCAGGTACTTCTTCTTGTACTGCAGCCCGAGGATCTTGATCAGGTTGTTGATTTCCGC 1280
Query 152913 ATTATCGGTCACCTGTTTCACCGTGGCATCCCGAACATTGCGCGGCTTTCCCCGGAGTGG 152972
|| || | ||| || ||| || ||||| || || || |||| || || || ||
Sbjct 1281 GTTCTCCAGGATCTGCTTGTGCGTCGCTTCCCGCACGTTCAGCAGCTTACCGCGCAGCGG 1340
Query 152973 AAACACGCCGAACGCGTTGCGGCCTACAACGCTCAGACCGGCAATAGCAAGGGCTTTCGC 153032
|||||| ||| ||| || ||| || || || | ||| || | | || | | ||| ||
Sbjct 1341 AAACACACCGTACGTGTCGCGACCGACCACCCCCAGCCCCGACACGGCCAACGTTTTGGC 1400
Query 153033 CGAGTCACCCTCGGTGATAATAAGCGTACAGTCGTGAGACCGATGAGTACCGGCCCAGTT 153092
|||||| |||||||| | || ||||| |||| | | || | | |||||| |||
Sbjct 1401 CGAGTCTCCCTCGGTCAGGATGAGCGTGCAGTTGAGCGAATTGCGCGAACCGGCATCGTT 1460
Query 153093 GGCGTCGTCAAGCTTGGGGATTCCCGTGATCCTGCTTTTCTTAGAGCCGTCGGTTTT 153149
||||| || ||||| ||||| ||| | ||| | ||||| |||||| |||||
Sbjct 1461 CGCGTCCTCCAGCTTCGGGATGCCCTTTATCTTCGACTTCTTCGAGCCGGACGTTTT 1517
Score = 129 bits (142), Expect = 6e-25
Identities = 308/457 (67%), Gaps = 14/457 (3%)
Strand=Plus/Plus
Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935
||||| |||||||| || |||||||||| ||| | ||||||||| || || || |
Sbjct 214 CCGGTCCCGATGCCGTCCGCACCGTTGATCAGCAGCATCGGCACGATCGGCAGATACCAG 273
Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCGGA 151995
|||| || | | || ||| || | ||| | || | | || ||| |||
Sbjct 274 ACCGGTTCGATGCGCTGGTTGTCCTCGTACTGGTACTCCAGCAGCGGATCGTCCAGCGGG 333
Query 151996 TCGAATATCCGTCGAGTCATAG--GAC-TCAAACGCGTGAAGATGTATCGGGAGCTGGCC 152052
| ||| || | || |||| | ||| ||| |||||||||||| | | ||||||
Sbjct 334 TGGAAGATGCACCGCGTCAGGGCCGACATCAT---CGTGAAGATGTACCTCGGGCTGGCG 390
Query 152053 GCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGG 152112
||||||||| || | ||||||||| || ||||| || || | || ||||||| |
Sbjct 391 CTATCCTTGCCGCCCGTCAGCCGCGTACCGAACTGACCGCCCGGGTACAGCAGGTTGATG 450
Query 152113 TTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCT--T 152170
||||| ||||||| | ||||| |||| || | ||||| | ||||| || |
Sbjct 451 TTGTTACTGCCCACGTAGTTCTGCGCCAGGTTGATGATCGT--CGAGCAGAGCGACTGCT 508
Query 152171 CACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGT 152230
| |||||||| || || | | ||||| | | ||||||| ||| |||||||||| |
Sbjct 509 CGCCGTGGTGGTAGGCGGACATTTCCGCCACCGAGCCCGCCAGCTGGGCCACCTTCACCT 568
Query 152231 C-CG-TCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAA 152288
| || | ||| ||| ||||| || | | | | |||||| |||||| || ||||
Sbjct 569 CGCGCTTGTC--GTTGCGCTTGAAGCACGTGAACAGCACCTTCCGCTGGCCCGGCTTCAG 626
Query 152289 ACCGTCCACCACGTGAGGAATCGAACGCTTGATGTCC 152325
||||||| || | || ||||||||| | |||||
Sbjct 627 CCCGTCCAGCATGCACGGGATCGAACGCACGTTGTCC 663
Score = 125 bits (138), Expect = 8e-24
Identities = 206/297 (69%), Gaps = 0/297 (0%)
Strand=Plus/Plus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
||||| ||||| | | ||| || ||||||||| || | || ||||||||||| ||
Sbjct 367 GTGAAGATGTACCTCGGGCTGGCGCTATCCTTGCCGCCCGTCAGCCGCGTACCGAACTGA 426
Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424
|| | ||| | || ||||| | |||||| |||||| |||| || |||| |||||
Sbjct 427 CCGCCCGGGTACAGCAGGTTGATGTTGTTACTGCCCACGTAGTTCTGCGCCAGGTTGATG 486
Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484
||||| ||| | ||| || ||||| || || | | |||||||| |||||
Sbjct 487 ATCGTCGAGCAGAGCGACTGCTCGCCGTGGTGGTAGGCGGACATTTCCGCCACCGAGCCC 546
Query 117485 GCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACC 117544
|||||||| |||||||||| || | | ||| ||||| ||| | | | ||||
Sbjct 547 GCCAGCTGGGCCACCTTCACCTCGCGCTTGTCGTTGCGCTTGAAGCACGTGAACAGCACC 606
Query 117545 TTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAACGCTTGATGTCC 117601
|| ||||| | |||||||| || ||| || | |||||||||||| | |||||
Sbjct 607 TTCCGCTGGCCCGGCTTCAGCCCGTCCAGCATGCACGGGATCGAACGCACGTTGTCC 663
Score = 114 bits (126), Expect = 1e-20
Identities = 271/405 (67%), Gaps = 17/405 (4%)
Strand=Plus/Plus
Query 117983 GGCCAGTACACGTGGATCATGTTCAGCACGAGCCCCTTGATATGGGAACCGTCCAGATCC 118042
||||||| | |||||| | ||| | || ||||||||||| || || || ||| |||||
Sbjct 1108 GGCCAGTTCGTGTGGATGAAGTTAATCAGCAGCCCCTTGATGTGCGACCCATCCTGATCC 1167
Query 118043 GCATCGGTCATGATCATCAGGCGGCCGTACCGTAAA-TCTCTCAG-------GGAGTTAT 118094
||| ||||||||||||| |||||||| | ||| |||| | || |
Sbjct 1168 TGATCCGTCATGATCATCACCTTACCGTACCGCAGCGTCT-TCAGATCGTCCGTCGTCAG 1226
Query 118095 AAACCTTACCATGT--TGGAGCCCGAGGATCTTTTTAAGGTTGGAAAATTCCTCATTTTC 118152
|| | | ||| || |||||||||||||| | |||||| | |||| | || ||
Sbjct 1227 GTACTTCTTCTTGTACTGCAGCCCGAGGATCTTGATCAGGTTGTTGATTTCCGCGTTCTC 1286
Query 118153 CGTCACCTGTTTTATGGTGGCGTCCCGAACGTTGCGCGGCTTACCCCGCAGTGGAAACAC 118212
| | ||| || || || ||||| ||||| || ||||||| ||||| ||||||||
Sbjct 1287 CAGGATCTGCTTGTGCGTCGCTTCCCGCACGTTCAGCAGCTTACCGCGCAGCGGAAACAC 1346
Query 118213 GCCAAACTTGTCACGGCCCACAACGCTCAAGCCGGCAATAGCAAGGGCCTTCGCCGAGTC 118272
|| || |||| || || || || | || || | | || | | || ||||||||
Sbjct 1347 ACCGTACGTGTCGCGACCGACCACCCCCAGCCCCGACACGGCCAACGTTTTGGCCGAGTC 1406
Query 118273 ACCCTCGGTAATAATAAGAGTGCACTCG---GTGCTGCGATGAGTACCGGCCCAATTAGC 118329
|||||||| | || || ||||| | | | ||| | | |||||| || ||
Sbjct 1407 TCCCTCGGTCAGGATGAGCGTGCAGTTGAGCGAATTGC---GCGAACCGGCATCGTTCGC 1463
Query 118330 ATCATCCAGCTTCGGAACGCCCGTAATGCGCGACTTTTTGGACCC 118374
|| ||||||||||| | |||| | || |||||| || || ||
Sbjct 1464 GTCCTCCAGCTTCGGGATGCCCTTTATCTTCGACTTCTTCGAGCC 1508
Score = 86.0 bits (94), Expect = 7e-12
Identities = 86/112 (77%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 119064 TAAATTTCGAACTGAACACGTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCA 119123
|||| || | ||||| | |||| ||||| |||||||| ||||| || ||||||||||
Sbjct 2261 TAAACTTGGTGCTGAAGATGTTGCACAGCTTCGCACCGTACCCGTTGCGGCCACCGGTCA 2320
Query 119124 CGCGCTGCTCCTCGTCGTTGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGAT 119175
| || |||||| |||||||||||||| ||| | || ||||| |||||
Sbjct 2321 CCTTCTCCTCCTCATCGTTGTAGTTGGATGAGGTGAGCAGATGCCCGAAGAT 2372
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 546929224615000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |