Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20koliensis_20[genbank_20GCA_5F000956275.1_202015-03-19] 41,925 sequences; 151,110,088 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq16794 138 1e-27 seq20716 125 8e-24 seq10535 86.0 7e-12 >seq16794 Length=6728 Score = 138 bits (152), Expect = 1e-27 Identities = 286/424 (67%), Gaps = 4/424 (1%) Strand=Plus/Minus Query 31983 GGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACCTGTC 32042 |||||| || ||||| ||||| |||||| | | | | ||| ||||| ||| Sbjct 633 GGACGGGCTGAAGCCGGGCCAGCGGAAGGTGCTGTTCACGTGCTTCAAGCGCAACGACAA 574 Query 32043 GAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCA 32102 | | || |||||||||| |||||| |||||| ||||| || | ||||| ||||| Sbjct 573 GCGCGAGGTGAAGGTGGCCCAGCTGGCGGGCTCGGTGGCGGAAATGTCCGCCTACCACCA 514 Query 32103 CGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAA 32162 ||||||| ||||||| || || ||||||| || ||||||| || || || Sbjct 513 CGGCGAGCAGTCGCTCTGCTCGACGATCATCAACCTGGCGCAGAACTACGTGGGCAGTAA 454 Query 32163 TAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGA 32222 ||| | ||| | || | || || ||||| || || ||||| | || |||||||| Sbjct 453 CAACATCAACCTGCTGTACCCGGGCGGTCAGTTCGGTACGCGGCTGACGGGCGGCAAGGA 394 Query 32223 TGCTGCGAGCTCCCGTTACATCTTCAC--CCGTCTCGCACCTTCGACGCGCAAGATTTTC 32280 | || ||| | | ||||||||||| | ||| ||| |||||| || ||| Sbjct 393 TAGCGCCAGCCCGAGGTACATCTTCACGATGATGTCGGCCCT--GACGCGGTGCATCTTC 336 Query 32281 GACCCGTCGGACGATGCGGTGCTCAAGTACAATTTTGATGACGGTCAGCGGGTCGAGCCG 32340 ||||| ||||||| || |||| ||||| | | || ||| ||||| |||| ||| Sbjct 335 CACCCGCTGGACGATCCGCTGCTGGAGTACCAGTACGAGGACAACCAGCGCATCGAACCG 276 Query 32341 GTGTTCTACAGTCCGGTGCTTCCGATGATCTTGGTGAACGGTGCAGAAGGCATCGGAACG 32400 || | || ||| | | |||||| | || | |||||||| || |||||||| || Sbjct 275 GTCTGGTATCTGCCGATCGTGCCGATGCTGCTGATCAACGGTGCGGACGGCATCGGGACC 216 Query 32401 GGGT 32404 |||| Sbjct 215 GGGT 212 Score = 107 bits (118), Expect = 2e-18 Identities = 184/267 (69%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 31177 GGGTCCAAAAAGTCTCGAATTACGGGAATTCCGAAGCTCGACGACGCCAACTGGGCCGGT 31236 || || || ||||| || | ||| || |||||||| || ||||| ||| |||||| Sbjct 1508 GGCTCGAAGAAGTCGAAGATAAAGGGCATCCCGAAGCTGGAGGACGCGAACGATGCCGGT 1449 Query 31237 ACCCACAAGTCGCACGAGTGCACGCTTATTATTACCGAGGGTGACTCGGCAAAGGCGCTT 31296 | | ||| |||| | | |||||||| || | |||||||| |||||||| || || | Sbjct 1448 TCGCGCAATTCGCTCAACTGCACGCTCATCCTGACCGAGGGAGACTCGGCCAAAACGTTG 1389 Query 31297 GCTATTGCTGGCTTGAGTGTTGTGGGGCGCAATGCGTTCGGGGTGTTTCCGCTCCGAGGC 31356 || | | || || | || || || ||| | ||| ||| ||||||||||| || || Sbjct 1388 GCCGTGTCGGGGCTGGGGGTGGTCGGTCGCGACACGTACGGTGTGTTTCCGCTGCGCGGT 1329 Query 31357 AAGCCGCGTAACGTTCGTGACGCCTCCGTTAAACAGGTTACGGATAATGAAGAGTTTTCC 31416 |||| || ||||| || || || | || ||| | ||| || | || | | Sbjct 1328 AAGCTGCTGAACGTGCGGGAAGCGACGCACAAGCAGATCCTGGAGAACGCGGAAATCAAC 1269 Query 31417 AACCTGAAAAAGATCCTCGGGCTTCAG 31443 ||||||| |||||||||||||| ||| Sbjct 1268 AACCTGATCAAGATCCTCGGGCTGCAG 1242 >seq20716 Length=12815 Score = 125 bits (138), Expect = 8e-24 Identities = 122/157 (78%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| ||||| || || || || ||||| ||||| |||||||| ||| | Sbjct 159 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCCTCG 100 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| ||||||| || || |||||||||||||| || || ||||| ||| Sbjct 99 GATACGATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGTATCCCGCCAGATCAG 40 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATG 27562 |||||||| || || || || ||||| || ||||||| Sbjct 39 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATG 3 >seq10535 Length=3010 Score = 86.0 bits (94), Expect = 7e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 64774 ATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATC 64833 || |||||||| || ||||| ||||||||||| || ||| | || ||||| ||||||||| Sbjct 302 ATCTTCTGGCTGAAGAAGCGCGGCCTGATGCCGGGGCTGACATTCTCGAATGAGCTGATC 243 Query 64834 TCTCGGGACGAGGGGCTCCACCAAGAATTTGC 64865 || || |||||||| || ||| || ||||| Sbjct 242 TCGCGCGACGAGGGACTGCACTGTGACTTTGC 211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570011521706000