Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20koliensis_20[genbank_20GCA_5F000956275.1_202015-03-19] 41,925 sequences; 151,110,088 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq20716 125 1e-23 seq16794 91.5 3e-13 seq41310 86.0 1e-11 seq40674 86.0 1e-11 seq5269 86.0 1e-11 seq3111 86.0 1e-11 >seq20716 Length=12815 Score = 125 bits (138), Expect = 1e-23 Identities = 125/162 (77%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 282941 GCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTC 283000 ||||||||| || || || ||||| ||||||| ||| || || || ||| |||||||| Sbjct 1 GCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGGGATACCCTC 60 Query 283001 CTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGT 283060 |||||| |||||||| || || || | ||||| || ||||| | ||||| || || || Sbjct 61 CTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGT 120 Query 283061 GATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || ||||||||||| | || || ||||| |||||||| || Sbjct 121 AATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTT 162 >seq16794 Length=6728 Score = 91.5 bits (100), Expect = 3e-13 Identities = 183/269 (68%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 273778 TCGTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACT 273837 ||||||| |||||||| | || || |||||||| || ||||| || ||| |||| Sbjct 365 TCGTGAAGATGTACCTCGGGCTGGCGCTATCCTTGCCGCCCGTCAGCCGCGTACCGAACT 424 Query 273838 GACC-CTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATTC 273896 |||| | |||| | ||| ||| |||||||| || || ||||| | ||| |||| || Sbjct 425 GACCGCCCGGGTAC-AGCAGGTTGATGTTGTTACTGCCCACGTAGTTCTGCGCCAGGTTG 483 Query 273897 ACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATATAA 273956 | ||| ||| || || |||||||||||| |||||| ||| || | | Sbjct 484 ATGATCGTCGAGCAGAGCGACTGCTCGCCGTGGTGGTAGGCGGACATTTCCGCCACCGAG 543 Query 273957 CCACTGAACTGAGCAACCTTCACATCGCTCGTCAAGTTTCGCTTGAATGCGGAATACAAC 274016 || | ||| || |||||||| |||| | | ||| |||||||| | ||| | Sbjct 544 CCCGCCAGCTGGGCCACCTTCACCTCGCGCTTGTCGTTGCGCTTGAAGCACGTGAACAGC 603 Query 274017 ACCTTCCGCTGCGAGGGCTTGAACCCATC 274045 ||||||||||| ||||| | ||| || Sbjct 604 ACCTTCCGCTGGCCCGGCTTCAGCCCGTC 632 >seq41310 Length=2265 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 119 TAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 175 >seq40674 Length=1550 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 1543 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 1487 >seq5269 Length=13955 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 13949 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 13893 >seq3111 Length=12476 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 12370 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 12426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046176929318950