Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20maculatus_20[genbank_20GCA_5F002091835.1_202017-04-14] 50,590 sequences; 462,688,933 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq561 100 2e-16 seq2250 89.7 4e-13 >seq561 Length=219668 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| || || || ||||| || |||||||| ||||||| || || || |||| Sbjct 140019 AGGACCAGATGGAGGGTGGATTCCTTCTGAATGTTATAGTCGGACAGGGTGCGACCATCT 139960 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 ||||| || ||||| ||| |||| || | || |||||| ||| | |||||||| || Sbjct 139959 TCCAACTGCTTGCCGGCAAAGATCAGACGCTGCTGATCCGGGGGGATTCCTTCCTTGTCC 139900 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 ||| | ||| || | | | ||||| || ||| |||| ||||||| | Sbjct 139899 TGAATCTTGGCCTTCACATTCTCGATTGTGTCGGATGGTTCGACCTCAAGGGTGATGGTC 139840 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 || ||||||| || || ||||| ||||||||||| Sbjct 139839 TTTCCGGTCAGAGTCTTCACAAAGATTTGCATTTT 139805 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| || || || ||||| || |||||||| ||||||| || || || |||| Sbjct 140475 AGGACCAGATGGAGGGTGGATTCCTTCTGAATGTTATAGTCGGACAGGGTGCGACCATCT 140416 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||||||| ||||| ||| |||| || | || |||||| ||| | |||||||| || Sbjct 140415 TCCAATTGCTTGCCGGCAAAGATCAGACGCTGCTGATCCGGGGGGATTCCTTCCTTGTCC 140356 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 ||| | ||| || | | | ||||| || ||| || | ||||||| | Sbjct 140355 TGAATCTTGGCCTTCACATTCTCGATGGTGTCGGATGGTTCGACCTCCAGGGTGATGGTC 140296 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || ||||||| || || || || || ||||| Sbjct 140295 TTTCCGGTCAGAGTCTTGACGAAGATCTGCAT 140264 >seq2250 Length=42400 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || |||| || |||| ||||| || ||||| || |||||||||||||||| | Sbjct 17064 CCACCGCGGAGTCGCAGCACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAGTCGGAC 17005 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || |||||||| || ||||| ||| |||| || | || ||||| || Sbjct 17004 AGGGTGCGACCATCTTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCTGGAGGA 16945 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||||||||| || | | || || || | | | ||||| |||||| Sbjct 16944 ATTCCTTCCTTATCCTGGATCT-TGGCTTTCACATTCTCGATCGTGTCCGATGGCTCGAC 16886 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | |||||| | ||||| || | |||||| || ||||| ||||| Sbjct 16885 CTCGAGTGTGATGGTCTTGCCCGTGAGTGTTTTCACGAAAATCTGCAT 16838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379110109529550