Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20maculatus_20[genbank_20GCA_5F002091835.1_202017-04-14] 50,590 sequences; 462,688,933 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq519 102 7e-16 seq310 96.9 3e-14 seq2250 93.3 3e-13 seq537 86.0 5e-11 seq187 86.0 5e-11 >seq519 Length=235090 Score = 102 bits (112), Expect = 7e-16 Identities = 179/258 (69%), Gaps = 6/258 (2%) Strand=Plus/Plus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 || || ||| | || || || || || ||||| ||||||| || | || || || ||| Sbjct 209134 GGCATTGATCTCGGCACGACCTACAGCTGTGTCGGTGTTTTCCAGCACGGCAAGGTAGAA 209193 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 || ||||||||||| || || ||| |||| || ||||| ||||| | ||||| || || Sbjct 209194 ATCATTGCCAATGACCAGGGCAACCGAACCACGCCATCGTATGTGGCCTTCACTGACACG 209253 Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCA---AGCCACTGGTAATCCTACCAATACT 550174 || | | | | || ||||| || || | || |||| || || || ||||| || Sbjct 209254 GAGCGTCTGATCGGCGATGCTGCCAAGAACCAGGTGGCCA-TG--AACCCGACCAACACC 209310 Query 550175 ATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGAT 550234 || || || || || ||| | || || | | ||| | ||| | | ||||||| || Sbjct 209311 ATCTTCGACGCGAAGCGTCTGATCGGCCGCAAATTTGACGATCCCGCCATTCAGGCCGAC 209370 Query 550235 ATGAAGCATTGGCCTTTC 550252 |||||||| ||||| ||| Sbjct 209371 ATGAAGCACTGGCCGTTC 209388 >seq310 Length=312542 Score = 96.9 bits (106), Expect = 3e-14 Identities = 178/258 (69%), Gaps = 6/258 (2%) Strand=Plus/Minus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 || || ||| | || || || || || ||||| ||||||| || | || || || ||| Sbjct 298325 GGCATTGATCTCGGCACGACCTACAGCTGTGTCGGTGTTTTCCAGCACGGCAAGGTAGAA 298266 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 || ||||||||||| || || ||| |||| || ||||| ||||| | ||||| || || Sbjct 298265 ATCATTGCCAATGACCAGGGCAACCGAACCACGCCATCGTATGTGGCCTTCACTGACACG 298206 Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCA---AGCCACTGGTAATCCTACCAATACT 550174 || | | | | || ||||| || || | || |||| || || || ||||| || Sbjct 298205 GAGCGTCTGATCGGCGATGCTGCCAAGAACCAGGTGGCCA-TG--AACCCGACCAACACC 298149 Query 550175 ATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGAT 550234 || || || || || ||| | || || | | ||| | ||| | | | ||||| || Sbjct 298148 ATCTTCGACGCGAAGCGTCTGATCGGCCGCAAATTTGACGATCCCGCCATCCAGGCCGAC 298089 Query 550235 ATGAAGCATTGGCCTTTC 550252 |||||||| ||||| ||| Sbjct 298088 ATGAAGCACTGGCCATTC 298071 >seq2250 Length=42400 Score = 93.3 bits (102), Expect = 3e-13 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCT 563315 ||| || || || ||||||||||| ||| || ||| ||||| || | || || | Sbjct 17056 GAGTCGCAGCACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAGTCGGACAGGGTGCG 16997 Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375 |||||| || || || |||||||| || || | |||||||| |||||||||||||| Sbjct 16996 ACCATCTTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCTGGAGGAATTCCTTC 16937 Query 563376 TTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAG 563434 ||||| || || || ||| || ||| || || || | || || ||||| | Sbjct 16936 CTTATCCTGGATCTTGGCTTTCACATTCTCGATCGTGTCCGATGGCTCGAC-CTCGAGTG 16878 Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | | || || || || || ||||| |||||||| ||||| Sbjct 16877 TGATGGTCTTGCCCGTGAGTGTTTTCACGAAAATCTGCAT 16838 >seq537 Length=227251 Score = 86.0 bits (94), Expect = 5e-11 Identities = 146/209 (70%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 549976 AATGTCAAACAAAGTAGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGT 550035 |||| |||| | | |||| | || |||||| | || || || || || || ||||| Sbjct 31853 AATGGCAAAGATACCAGCTGTCGGCATAGATCTTGGCACGACCTACTCGTGCGTCGGTGT 31794 Query 550036 TTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATC 550095 | || | ||||| || || ||||||||||||||||| || ||| | || || || || Sbjct 31793 ATTCCAGCACGGTAAGGTGGACATTATTGCCAATGATCAGGGCAACCGGACCACCCCGTC 31734 Query 550096 TTATGTTTCTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCA---AGC 550152 ||||| | ||||| || | |||| || |||| ||||| || || |||| || Sbjct 31733 CTATGTGGCGTTCACCGATTCGGAACGGTTGATTGGGGATGCTGCCAAGAATCAGGTTGC 31674 Query 550153 CACTGGTAATCCTACCAATACTATTTTTG 550181 || || ||||| | ||| || ||||||| Sbjct 31673 CA-TG--AATCCAAACAACACCATTTTTG 31648 >seq187 Length=395447 Score = 86.0 bits (94), Expect = 5e-11 Identities = 146/209 (70%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 549976 AATGTCAAACAAAGTAGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGT 550035 |||| |||| | | |||| | || |||||| | || || || || || || ||||| Sbjct 194139 AATGGCAAAGATACCAGCTGTCGGCATAGATCTTGGCACGACCTACTCGTGCGTCGGTGT 194198 Query 550036 TTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATC 550095 | || | ||||| || || ||||||||||||||||| || ||| | || || || || Sbjct 194199 ATTCCAGCACGGTAAGGTGGACATTATTGCCAATGATCAGGGCAACCGGACCACCCCGTC 194258 Query 550096 TTATGTTTCTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCA---AGC 550152 ||||| | ||||| || | |||| || |||| ||||| || || |||| || Sbjct 194259 CTATGTGGCGTTCACCGATTCGGAACGGTTGATTGGGGATGCTGCCAAGAATCAGGTTGC 194318 Query 550153 CACTGGTAATCCTACCAATACTATTTTTG 550181 || || ||||| | ||| || ||||||| Sbjct 194319 CA-TG--AATCCAAACAACACCATTTTTG 194344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4026620572639100