Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20maculatus_20[genbank_20GCA_5F002091835.1_202017-04-14] 50,590 sequences; 462,688,933 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq1115 141 7e-29 seq1508 138 9e-28 seq561 100 2e-16 seq2250 96.9 3e-15 seq843 93.3 3e-14 seq701 93.3 3e-14 >seq1115 Length=122843 Score = 141 bits (156), Expect = 7e-29 Identities = 213/303 (70%), Gaps = 0/303 (0%) Strand=Plus/Minus Query 8991 TTAATTAGTACCGGTTGACCCAAACCCTCCCTCTCCGCGATTGGTGTCAGTCGTGGAAGT 9050 ||| || || ||||| || || || |||||| |||| || | |||||||| |||| Sbjct 111740 TTAGTTGGTGCCGGTCGATCCGAAACCTCCCGCTCCACGCTCCGTGTCAGTAAGCGAAGG 111681 Query 9051 AACCTCTACCAGTGTGGGATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTCCCC 9110 || || |||| ||||||| |||| || ||||| || || || || | || || Sbjct 111680 AAGTTCCTCCAGGTCGGGATAAGCAATTTTCTCGCAAATAAACTGGGCGATACGATCACC 111621 Query 9111 CTTATTCACGACAAAGTCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCT 9170 || || || | ||||||| || ||||||||||||||||| || || || || || | Sbjct 111620 TTTCTTTACTTCGAAGTCTGCCTCAGAATGATTGAACAGCACGACGCCAACATTGCCGCG 111561 Query 9171 GTAATCCTCATCGATCACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGA 9230 ||| |||||||||| || || || || || |||||||| | || || || | || || Sbjct 111560 GTAGTCCTCATCGACGACGCCGGCTCCTACATCGATGAAATTTTTCACAGCCAAACCGGA 111501 Query 9231 GCGGGGCGCGATTCGACCGTAGCATCCCACCGGTAATTGCACCCGCAAGTCGGTCATGAC 9290 || || || | ||| ||||| || || | || | |||||| | | ||||||||| || Sbjct 111500 CCGTGGAGCTACTCGTCCGTAACAACCTTCGGGCACATGCACCTGGATGTCGGTCATTAC 111441 Query 9291 CAG 9293 || Sbjct 111440 GAG 111438 >seq1508 Length=84706 Score = 138 bits (152), Expect = 9e-28 Identities = 210/299 (70%), Gaps = 0/299 (0%) Strand=Plus/Minus Query 8995 TTAGTACCGGTTGACCCAAACCCTCCCTCTCCGCGATTGGTGTCAGTCGTGGAAGTAACC 9054 || || ||||| || || || |||||| |||| || | ||||| || |||| || Sbjct 38641 TTGGTGCCGGTCGATCCGAAACCTCCCGCTCCACGCTCCGTGTCTGTTAGCGAAGGAAGT 38582 Query 9055 TCTACCAGTGTGGGATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTA 9114 || |||| ||||||| |||| || ||||| || || || || | || || || Sbjct 38581 TCCTCCAGGTCGGGATAAGCAATTTTCTCGCAAATAAACTGGGCGATACGATCACCTTTC 38522 Query 9115 TTCACGACAAAGTCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAA 9174 || || | ||||||| || ||||||||||||||||| || || || || || | ||| Sbjct 38521 TTTACTTCGAAGTCTGCCTCAGAATGATTGAACAGCACGACGCCAACATTGCCGCGGTAG 38462 Query 9175 TCCTCATCGATCACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGG 9234 |||||||||| || || || || || |||||||| | || || || | || || || Sbjct 38461 TCCTCATCGACGACGCCGGCTCCTACATCGATGAAATTTTTCACAGCCAAACCGGACCGT 38402 Query 9235 GGCGCGATTCGACCGTAGCATCCCACCGGTAATTGCACCCGCAAGTCGGTCATGACCAG 9293 || || | ||| ||||| || || |||| | |||||| | | ||||||||| || || Sbjct 38401 GGAGCTACTCGTCCGTAACAACCTTCCGGCACATGCACCTGGATGTCGGTCATTACGAG 38343 >seq561 Length=219668 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| |||| ||| || ||| || || ||||| || || || || || | ||| Sbjct 140025 AGACGCAGGACCAGATGGAGGGTGGATTCCTTCTGAATGTTATAGTCGGACAGGGTGCGA 139966 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||||||||| |||||||| ||||| ||||| ||||||| ||| | || ||| Sbjct 139965 CCATCTTCCAACTGCTTGCCGGCAAAGATCAGACGCTGCTGATCCGGGGGGATTCCTTCC 139906 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || ||| | | | || || | || ||||| | || Sbjct 139905 TTGTCCTGAATCTTGGCCTTCACATTCTCGATTGTGTCGGATGGTTCGACCTCAAGGGTG 139846 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| |||| ||| || ||||| || ||||| Sbjct 139845 ATGGTCTTTCCGGTCAGAGTCTTCACAAAGATTTGCAT 139808 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| |||| ||| || ||| || || ||||| || || || || || | ||| Sbjct 140253 AGACGCAGGACCAGATGGAGGGTGGATTCCTTCTGAATGTTATAGTCGGACAGGGTGCGA 140194 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||||||||| |||||||| ||||| ||||| ||||||| ||| | || ||| Sbjct 140193 CCATCTTCCAACTGCTTGCCGGCAAAGATCAGACGCTGCTGATCCGGGGGGATTCCTTCC 140134 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || ||| | | | || || | || ||||| | || Sbjct 140133 TTGTCCTGAATCTTGGCCTTCACATTCTCGATGGTGTCGGATGGTTCGACCTCAAGGGTG 140074 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| |||| || || || || |||||||| Sbjct 140073 ATGGTCTTTCCGGTCAGCGTCTTGACGAAGATCTGCAT 140036 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| |||| ||| || ||| || || ||||| || || || || || | ||| Sbjct 140709 AGACGCAAGACCAGATGGAGGGTGGATTCCTTCTGAATGTTATAGTCGGACAGGGTGCGA 140650 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||||||||| |||||||| || || ||||| ||||| | ||| | || ||| Sbjct 140649 CCATCTTCCAACTGCTTGCCGGCAAAGATGAGACGCTGCTGATCTGGGGGGATTCCTTCC 140590 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || ||| | | | || || | || ||||| | || Sbjct 140589 TTGTCCTGAATCTTGGCCTTCACATTCTCGATGGTGTCGGATGGTTCGACCTCAAGGGTG 140530 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| |||| || || || || |||||||| Sbjct 140529 ATGGTCTTTCCGGTCAGTGTCTTGACGAAGATCTGCAT 140492 >seq2250 Length=42400 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||||| ||| || ||| || || ||||| ||||| || || || | ||| Sbjct 17055 AGTCGCAGCACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGA 16996 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| |||||||| || || ||||| ||||| | |||| || ||| Sbjct 16995 CCATCTTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCTGGAGGAATTCCTTCC 16936 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||||| ||| ||| | | | || || | ||| ||||| | || Sbjct 16935 TTATCCTGGATCTTGGCTTTCACATTCTCGATCGTGTCCGATGGCTCGACCTCGAGTGTG 16876 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || ||||| | ||||| || ||||||||||| Sbjct 16875 ATGGTCTTGCCCGTGAGTGTTTTCACGAAAATCTGCAT 16838 >seq843 Length=160513 Score = 93.3 bits (102), Expect = 3e-14 Identities = 164/238 (69%), Gaps = 1/238 (0%) Strand=Plus/Plus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 |||| || | || || | ||||| || || || ||| || || || ||||| || | Sbjct 68835 CGCCACCGCGCAGGCGAAGCACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGG 68894 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 | || | || |||| |||| |||||||||||| || ||||| ||||| ||||| | | Sbjct 68895 ACAGGGTGCGTCCGTCCTCCAGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCGGGCG 68954 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 | | |||||||||||| ||||| || ||| | | | || || | || | Sbjct 68955 GGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGATGGTTCGA 69014 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTGTGTAC 48775 |||| | ||||| || || ||||| | ||||| || || ||||||||| || |||| Sbjct 69015 CCTCAAGAGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTTG-GTAC 69071 >seq701 Length=187196 Score = 93.3 bits (102), Expect = 3e-14 Identities = 164/238 (69%), Gaps = 1/238 (0%) Strand=Plus/Minus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 |||| || | || || | ||||| || || || ||| || || || ||||| || | Sbjct 176852 CGCCACCGCGCAGGCGAAGCACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGG 176793 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 | || | || |||| |||| |||||||||||| || ||||| ||||| ||||| | | Sbjct 176792 ACAGGGTGCGTCCGTCCTCCAGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCGGGCG 176733 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 | | |||||||||||| ||||| || ||| | | | || || | || | Sbjct 176732 GGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGATGGTTCGA 176673 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTGTGTAC 48775 |||| | ||||| || || ||||| | ||||| || || ||||||||| || |||| Sbjct 176672 CCTCAAGAGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTTG-GTAC 176616 Score = 93.3 bits (102), Expect = 3e-14 Identities = 164/238 (69%), Gaps = 1/238 (0%) Strand=Plus/Minus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 |||| || | || || | ||||| || || || ||| || || || ||||| || | Sbjct 183621 CGCCACCGCGCAGGCGAAGCACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGG 183562 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 | || | || |||| |||| |||||||||||| || ||||| ||||| ||||| | | Sbjct 183561 ACAGGGTGCGTCCGTCCTCCAGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCGGGCG 183502 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 | | |||||||||||| ||||| || ||| | | | || || | || | Sbjct 183501 GGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGATGGTTCGA 183442 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTGTGTAC 48775 |||| | ||||| || || ||||| | ||||| || || ||||||||| || |||| Sbjct 183441 CCTCAAGAGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTTG-GTAC 183385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380702726970570