Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20maculatus_20[genbank_20GCA_5F002091835.1_202017-04-14] 50,590 sequences; 462,688,933 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq561 122 7e-23 seq98 86.0 5e-12 >seq561 Length=219668 Score = 122 bits (134), Expect = 7e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || |||||| |||| ||| || |||||||| || ||||||||||| || | Sbjct 140034 CCACCACGCAGACGCAGGACCAGATGGAGGGTGGATTCCTTCTGAATGTTATAGTCGGAC 139975 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||||| ||| || | || ||||| ||| | |||| | ||||||||||| || Sbjct 139974 AGGGTGCGACCATCTTCCAACTGCTTGCCGGCAAAGATCAGACGCTGCTGATCCGGGGGG 139915 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || || ||||| || ||| || | || ||| | || | ||||| || |||| || Sbjct 139914 ATTCCTTCCTTGTCCTG-AATCTTGGCCTTCACATTCTCGATTGTGTCGGATGGTTCGAC 139856 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 ||||| || || || || || || | || || ||||| || |||||||| Sbjct 139855 CTCAAGGGTGATGGTCTTTCCGGTCAGAGTCTTCACAAAGATTTGCATTTT 139805 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || |||||| |||| ||| || |||||||| || ||||||||||| || | Sbjct 140262 CCACCACGCAGACGCAGGACCAGATGGAGGGTGGATTCCTTCTGAATGTTATAGTCGGAC 140203 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||||| ||| || | || ||||| ||| | |||| | ||||||||||| || Sbjct 140202 AGGGTGCGACCATCTTCCAACTGCTTGCCGGCAAAGATCAGACGCTGCTGATCCGGGGGG 140143 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || || ||||| || ||| || | || ||| | || | ||||| || |||| || Sbjct 140142 ATTCCTTCCTTGTCCTG-AATCTTGGCCTTCACATTCTCGATGGTGTCGGATGGTTCGAC 140084 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || || || || || | || || || || |||||||| Sbjct 140083 CTCAAGGGTGATGGTCTTTCCGGTCAGCGTCTTGACGAAGATCTGCAT 140036 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || |||||| |||| ||| || |||||||| || ||||||||||| || | Sbjct 140490 CCACCACGCAGACGCAGGACCAGATGGAGGGTGGATTCCTTCTGAATGTTATAGTCGGAC 140431 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||||| ||| || | ||| ||||| ||| | |||| | ||||||||||| || Sbjct 140430 AGGGTGCGACCATCTTCCAATTGCTTGCCGGCAAAGATCAGACGCTGCTGATCCGGGGGG 140371 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || || ||||| || ||| || | || ||| | || | ||||| || |||| || Sbjct 140370 ATTCCTTCCTTGTCCTG-AATCTTGGCCTTCACATTCTCGATGGTGTCGGATGGTTCGAC 140312 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || || || || | || || || || |||||||| Sbjct 140311 CTCCAGGGTGATGGTCTTTCCGGTCAGAGTCTTGACGAAGATCTGCAT 140264 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| || | || ||||| |||| ||| || |||||||| || ||||||||||| || | Sbjct 140719 TCCACCACGCAGACGCAAGACCAGATGGAGGGTGGATTCCTTCTGAATGTTATAGTCGGA 140660 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | ||||||| ||| || | || ||||| ||| | || | | |||||||| || || Sbjct 140659 CAGGGTGCGACCATCTTCCAACTGCTTGCCGGCAAAGATGAGACGCTGCTGATCTGGGGG 140600 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 || || || ||||| || ||| || | || ||| | || | ||||| || |||| | Sbjct 140599 GATTCCTTCCTTGTCCTG-AATCTTGGCCTTCACATTCTCGATGGTGTCGGATGGTTCGA 140541 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | ||||| || || || || || || | || || || || |||||||| Sbjct 140540 CCTCAAGGGTGATGGTCTTTCCGGTCAGTGTCTTGACGAAGATCTGCAT 140492 >seq98 Length=483913 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | || ||| || ||||| || | || || || || || ||||| || || | Sbjct 464716 CCTCCACGCAGACGGAGGACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 464657 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || ||| || || || || || || | ||||| | |||||||| || ||| Sbjct 464656 AGAGTACGTCCATCCTCAAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAGGA 464597 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 |||||||| ||||| || | || || || | || | ||||| ||| | || || Sbjct 464596 ATACCCTCCTTGTCCTGGATCTTAGCCTTCACGTTCTCGATCGTGTCCGAAGGCTCGACC 464537 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | || || || |||||||| || || || ||||| || ||||| Sbjct 464536 TCCAACGTGATGGTCTTGCCAGTCAACGTCTTCACAAAGATTTGCAT 464490 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || ||||| ||||| || || || || |||||||| || || | | || || | Sbjct 465622 CGAAGAACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGACAGAGTACGTCCA 465563 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || || || || | ||||| | |||||||| || ||||||||||| ||| Sbjct 465562 TCCTCAAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATACCCTCCTTG 465503 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | || || || | || | ||||| || | || || || || || || Sbjct 465502 TCCTGGATCTTAGCCTTCACGTTCTCGATCGTGTCCGAGGGCTCGACCTCCAGCGTGATG 465443 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || |||||||| | || || || || |||||||| Sbjct 465442 GTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 465408 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || ||||| ||||| || || || || || ||||| || || | | || || | Sbjct 465160 CGAAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGTCCA 465101 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || || || || | ||||| | |||||||| || ||||||||||| ||| Sbjct 465100 TCCTCAAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATACCCTCCTTG 465041 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | || || || | || | ||||| || | || || || || || || Sbjct 465040 TCCTGGATCTTAGCCTTCACGTTCTCGATCGTGTCCGAGGGCTCGACCTCCAGCGTGATG 464981 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || |||||||| | || || || || |||||||| Sbjct 464980 GTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 464946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 384981687083190