Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20maculatus_20[genbank_20GCA_5F002091835.1_202017-04-14] 50,590 sequences; 462,688,933 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq843 87.8 2e-12 seq701 87.8 2e-12 seq569 86.0 6e-12 seq1541 82.4 7e-11 >seq843 Length=160513 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 137209 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 137268 |||| || || || || || |||||||| ||| || |||| ||| || || || Sbjct 68861 TGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTCCAGCTGC 68920 Query 137269 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 137328 ||||| || |||||||||| ||||||||||| || ||||| || ||||| || || Sbjct 68921 TTACCGGCGAAGATCAGACGCTGCTGATCGGGCGGGATGCCCTCCTTGTCCTGGATCTTC 68980 Query 137329 TGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 137388 || | | || | ||| || | ||||| || |||| ||| | ||||| || || Sbjct 68981 GCCTTCACATTCTCGATCGTATCCGATGGTTCGACCTCAAGAGTAATGGTCTTACCCGTG 69040 Query 137389 AATGTTTTTACGAATATTTGCAT 137411 | ||||| ||||| || ||||| Sbjct 69041 AGGGTTTTGACGAAGATCTGCAT 69063 >seq701 Length=187196 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 137209 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 137268 |||| || || || || || |||||||| ||| || |||| ||| || || || Sbjct 176826 TGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTCCAGCTGC 176767 Query 137269 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 137328 ||||| || |||||||||| ||||||||||| || ||||| || ||||| || || Sbjct 176766 TTACCGGCGAAGATCAGACGCTGCTGATCGGGCGGGATGCCCTCCTTGTCCTGGATCTTC 176707 Query 137329 TGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 137388 || | | || | ||| || | ||||| || |||| ||| | ||||| || || Sbjct 176706 GCCTTCACATTCTCGATCGTATCCGATGGTTCGACCTCAAGAGTAATGGTCTTACCCGTG 176647 Query 137389 AATGTTTTTACGAATATTTGCAT 137411 | ||||| ||||| || ||||| Sbjct 176646 AGGGTTTTGACGAAGATCTGCAT 176624 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 137209 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 137268 |||| || || || || || |||||||| ||| || |||| ||| || || || Sbjct 183595 TGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTCCAGCTGC 183536 Query 137269 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 137328 ||||| || |||||||||| ||||||||||| || ||||| || ||||| || || Sbjct 183535 TTACCGGCGAAGATCAGACGCTGCTGATCGGGCGGGATGCCCTCCTTGTCCTGGATCTTC 183476 Query 137329 TGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 137388 || | | || | ||| || | ||||| || |||| ||| | ||||| || || Sbjct 183475 GCCTTCACATTCTCGATCGTATCCGATGGTTCGACCTCAAGAGTAATGGTCTTACCCGTG 183416 Query 137389 AATGTTTTTACGAATATTTGCAT 137411 | ||||| ||||| || ||||| Sbjct 183415 AGGGTTTTGACGAAGATCTGCAT 183393 >seq569 Length=217393 Score = 86.0 bits (94), Expect = 6e-12 Identities = 109/149 (73%), Gaps = 1/149 (1%) Strand=Plus/Plus Query 50274 ACTTTGGCCGAACGTTTAGTGGCGTTTGCCATAGTTGAAGGTGTGtttttttCCGGTAGC 50333 |||||||| |||||| | || |||||||| || || ||| | || || ||||||| Sbjct 206235 ACTTTGGC-GAACGTGTGGTCGCGTTTGCGGCCGTCGAGGGTATCTTCTTCAGCGGTAGC 206293 Query 50334 TTTGCAGCCATATTTTACATTAAAACCTTAGGCATAATGCCCGGCCTCACGTTTAGCAAC 50393 ||||| |||| || | | || | |||| | |||||||| || ||||| ||| Sbjct 206294 TTTGCGTCCATTTTCTGGCTGAAGAAGCGAGGCCTGATGCCCGGGCTGACGTTCTCGAAC 206353 Query 50394 GAGTTGATTTCGCGCGACGAAGGAATGCA 50422 ||| |||||||||||||||| ||| |||| Sbjct 206354 GAGCTGATTTCGCGCGACGAGGGATTGCA 206382 >seq1541 Length=81579 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/208 (70%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 50217 CCGTGTGTGCGTAAAAAGGACGATTGGGCATTGAAATGGACTaaaaacaaaaaa-CTTAC 50275 ||||| ||| || |||| ||| ||||| | || |||| | ||| || | || Sbjct 59497 CCGTGCGTGAAGAAGAAGGCCGACTGGGCCCTTAACTGGATCTCGAGCAAGAAGGCCAAC 59556 Query 50276 TTTGGCCGAACGTTTAGTGGCGTTTGCCATAGTTGAAGGTGTGtttttttCCGGTAGCTT 50335 |||||| |||||| | || |||||||| || || ||| | || || ||| ||||| Sbjct 59557 TTTGGC-GAACGTGTGGTCGCGTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGCAGCTT 59615 Query 50336 TGCAGCCATATTTTACATTAA-AACCTTAGGCATAATGCCCGGCCTCACGTTTAGCAACG 50394 ||| |||| || | | || || | | ||| | |||||||| || ||||| |||| Sbjct 59616 TGCGTCCATTTTCTGGCTGAAGAAGCGT-GGCCTGATGCCCGGGCTGACGTTCTCGAACG 59674 Query 50395 AGTTGATTTCGCGCGACGAAGGAATGCA 50422 || |||||||||||||||| ||| |||| Sbjct 59675 AGCTGATTTCGCGCGACGAGGGATTGCA 59702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488235056988000