Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20melas_20[genbank_20GCA_5F000473525.2_202014-01-17] 20,229 sequences; 224,162,116 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq8412 114 1e-20 seq2002 100 2e-16 seq5706 87.8 2e-12 seq3203 86.0 5e-12 >seq8412 Length=7683 Score = 114 bits (126), Expect = 1e-20 Identities = 165/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||||||| ||| | || |||||||| || ||||| ||||| | | Sbjct 4012 CCACCGCGCAGGCGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 3953 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | ||||||||||| ||||| || | || || | |||||| || || Sbjct 3952 AGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGGG 3893 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| |||||| ||||| | ||| ||||| |||||| Sbjct 3892 ATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACC 3833 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGAA 21181 || | |||||||||||| || || | |||||||| || || ||||| ||||| Sbjct 3832 TCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTTGAA 3780 >seq2002 Length=20453 Score = 100 bits (110), Expect = 2e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 20946 TTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCC 21005 || || || || || | ||||||| ||| | || || ||||| |||||||| ||||| Sbjct 18681 TTACCACCACGGAGTCGCAGCACCAGATGAAGGGTCGATTCCTTCTGAATGTTGTAGTCG 18622 Query 21006 GCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACG 21065 | || || | | ||||||||||| ||||| || | || || | |||||| || | Sbjct 18621 GAGAGAGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGG 18562 Query 21066 GGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCC 21125 || | |||||||||||| ||||||| ||||| | ||| || || ||||| Sbjct 18561 GGAATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATCGTGTCCGAAGGCTCG 18502 Query 21126 GTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 || | || |||||||||||||| | ||||| || || || ||||| || Sbjct 18501 ACCTCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCATGTT 18449 >seq5706 Length=17240 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 20946 TTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCC 21005 ||||| || ||||| | ||| |||| ||| | ||||||||||| || |||||||||||| Sbjct 98 TTTCCACCACGCAGACGGAGAACCAGATGAAGGGTGGACTCCTTCTGGATGTTATAGTCC 39 Query 21006 GCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCA 21041 | |||||| || | ||||||||||| || || ||| Sbjct 38 GACAGGGTGCGGCCATCCTCCAGCTGCTTTCCGGCA 3 >seq3203 Length=18791 Score = 86.0 bits (94), Expect = 5e-12 Identities = 117/163 (72%), Gaps = 8/163 (5%) Strand=Plus/Minus Query 29051 AAGTCGCGGCCCTTGACGAGCAGCACGTACTCGCAGCGGTCGTACCAGCGGGCGTGTTGC 29110 || ||||||||||| | ||| ||| ||| | |||| | ||||||| ||||| ||| Sbjct 18276 AACTCGCGGCCCTTCATCAGCTGCAGGTAGTGGCAGTTGCTGTACCAGATCGCGTGCTGC 18217 Query 29111 TGCCACGGCGCGTCGTCGGGTTCCCAATCCTTCAGACCGCCGTCGCAGCAAAAGCAC--- 29167 |||||||| |||| || | ||||| ||||| || || ||| | |||| |||||| Sbjct 18216 TGCCACGGGTCGTCCTCCTGCTCCCAGTCCTTGAGCCCACCGCCACAGCTGAAGCACTTG 18157 Query 29168 -CGCGTCTTGTCGCCCTGGCCAGTGTAAAAGAATCCGGCCTCG 29209 |||| ||||| | ||| ||||| ||||| || || ||| Sbjct 18156 ACGCG----GTCGCTCATGCCCGTGTAGAAGAAGCCAGCGTCG 18118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422155095820964