Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20melas_20[genbank_20GCA_5F000473525.2_202014-01-17] 20,229 sequences; 224,162,116 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq8504 206 2e-48 seq2002 136 3e-27 seq8412 118 9e-22 >seq8504 Length=8995 Score = 206 bits (228), Expect = 2e-48 Identities = 534/808 (66%), Gaps = 42/808 (5%) Strand=Plus/Minus Query 133215 AGATACTGGTTGACCACTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCGAC 133274 |||| ||||| ||||| || |||||||| | || ||||| || || || |||||| Sbjct 2788 AGATGATGGTTCACCACCTGGAACTCGCCCGACAGCACGCGCCTATTGTAAACGTTCGAC 2729 Query 133275 GTGAACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATG 133334 ||| |||| ||||| ||||| ||||||||||| || || ||||| | ||||| ||||| Sbjct 2728 GTGTACGGCTCGAACGATTCATTGTTGCCGAGAATTTGTGCCGTGGAAGCCGTCGGCATC 2669 Query 133335 TACGCCACCAACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCAATTCGTTC 133394 |||| || || || || | | ||||| |||| || || || ||| ||| | Sbjct 2668 GGGGCCAACAGCAGCGAATTGCGAATGCCGTGCTTGGCGATCTTTTCCTTCAACTCGGCC 2609 Query 133395 CAGTCCCACAGATTGTTGGAATGATAGACGCCGTTCTCGTCGTCGTAGTTGTGAAAATGC 133454 |||| |||||||| || || | || | || | | | | ||| Sbjct 2608 CAGTTCCACAGAT--------------CCGTCGGT-TCCTTGTTCCACATCTCGTACTGC 2564 Query 133455 AAAATACCCCTGCTCACCGGACTGTCCGTGTACGATTCATAGGGTCCGTTGATTTTGGCC 133514 | ||| ||| |||||||||| ||| || ||||| || || || || | |||| Sbjct 2563 AGAATGCCCTTGCTCACCGGGCTGCCCTCGTACGTCTCGTACGGACCATCTCGAGCGGCC 2504 Query 133515 AGCTCGCAGCTAGCCTCCAAAGCGGCAAAGTAAATGGTTTCCGCGATTGAATAGTTGACG 133574 ||||| ||||| || |||| ||| | |||| |||||||| ||||| ||| | Sbjct 2503 AGCTCACAGCTCGCTTCCAGTGCGCCGTAGTAGATGGTTTC-------GAATATTTGCTG 2451 Query 133575 A---ACCT----GGCATCGTCGCTATCGTAGGCGATGTCG-AGAAGAACAAACGCGTCGG 133626 | | || || || ||||| ||||| | ||| || | || | ||||| |||| Sbjct 2450 ATTTAGCTTTTGAGCCTCTTCGCTTTCGTACG-GATAGCGCATCAGGATGAACGCATCGG 2392 Query 133627 CCAAACCCTGTATGCCGACGCCGATGGGTCGATGTTTTTTATTGCTCCTCTCCGACTCGG 133686 ||| ||||| | ||||| |||||| |||| || ||||| | || | ||| | Sbjct 2391 CCATGCCCTGCACGCCGATGCCGATCGGTCTGTGGCGCATATTGGAGCGCTTAGCCTCCG 2332 Query 133687 CCGTGGGATAGTGGTTGACGTCGATGATCTTGTTGAGATTGCGGACGATAATTTTAGTCA 133746 | |||||||| ||||| || ||||| ||||| |||||||| | | |||| | Sbjct 2331 GCACGGGATAGTAATTGACATCAATGATTTTGTTCAGATTGCGCGTCACTGTCTTAGCGA 2272 Query 133747 AATGTTTCAGCAAAACATAGTCAAATGTCTTGGCGTCGACGTCGACGCACTTGTTGACGG 133806 | |||||| || ||||| | || || ||| | || || |||| | || Sbjct 2271 CTTCCTTCAGCTTTGCAAAGTCATACGTTTT---GTCTTGCTTTACAAACATGTTCAAGG 2215 Query 133807 CAATACTGGCTAGATTACAAACGGCCGTCTCGTTC-TCGTCGCAATACTGGACGATCTCG 133865 | || ||| ||||| || || || ||| | | ||| || | |||| || ||||| Sbjct 2214 CGATCGAGGCCAGATTGCATACCGCTACCTCATCCTTCGACG-AGTACTCCACAATCTCA 2156 Query 133866 GCGCAGAGGTTGCTGCATTTGATGGTGCCCAAAtttttttGATTGCTAAAGTTATTGCAA 133925 | ||| |||||| |||||||||||||| | ||| | || || || ||||||| Sbjct 2155 GTGCACAGGTTGGAACATTTGATGGTGCCGATATTCTGCTGGTTACTTTTACGATTGCAA 2096 Query 133926 TGATCCTTGTATAGCATGTACGGCCCGCCGGTTTCGACGTTGGTCTCGACGAT---AAAT 133982 ||||||||| ||||||||||| |||||||||| || | | |||| ||| ||| Sbjct 2095 GCATCCTTGTACAGCATGTACGGTACGCCGGTTTCCACCTGCGATTCGATGATCGCAAAC 2036 Query 133983 CTAAACAAGTCTCTCGCCTTCACCTGCC 134010 | ||| || |||||||||||||| Sbjct 2035 C---ACAGATCCTGCGCCTTCACCTGCC 2011 >seq2002 Length=20453 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | || || ||||| || | || || || || ||||||||||| ||| Sbjct 18680 TACCACCACGGAGTCGCAGCACCAGATGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGG 18621 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | |||||| |||||| ||||| || || ||| |||| |||||||||||||| || | Sbjct 18620 AGAGAGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGG 18561 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | ||||| |||||||| || ||| || || | |||| ||||||| ||||| Sbjct 18560 GAATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATCGTGTCCGAAGGCTCGA 18501 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||| | || | || |||||||| || ||||| || |||||||||||| Sbjct 18500 CCTCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCATG 18451 >seq8412 Length=7683 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| ||||| | | || ||||| || | || ||||| || || |||||||| ||| Sbjct 4013 ACCACCGCGCAGGCGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 3954 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || ||||| |||||| ||||| || || ||| |||| |||||||||||||| || || Sbjct 3953 CAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGG 3894 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || ||||||||||| || || || || | |||| || |||| | |||||| Sbjct 3893 GATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGAC 3834 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| | ||| | || || || || || ||||| || || |||||||| Sbjct 3833 CTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 3786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433723443046468